{ "bcoid": "GLY_000718", "title": "The Human Glycan Interaction Data Citations (MatrixDB)", "description": "The Human Glycan Interaction data Citations (MatrixDB)] contains details of the publication present in ...", "filename": "human_protein_citations_matrixdb.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Glycan Interaction Data Citations (MatrixDB)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P18075-1...", "Heparan sulf..." ], [ "P08294-1...", "Structural r..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P18075-1", "Heparan sulfate is required for bone morphogenetic protein-7 signaling.", "Biochemical and biophysical research communications", "2003 Sep 5", "Irie A, Habuchi H, Kimata K, Sanai Y", "protein_xref_pubmed", "12927798", "glycan_xref_matrixdb", "GAG_1" ], [ "P08294-1", "Structural requirements for high-affinity heparin binding: alanine scanning analysis of charged residues in the C-terminal domain of human extracellular superoxide dismutase.", "Biochemistry", "2002 Mar 5", "Stenlund P, Lindberg MJ, Tibell LA", "protein_xref_pubmed", "11863456", "glycan_xref_matrixdb", "GAG_1" ], [ "P35555-1", "Fibrillin-1 interactions with heparin. Implications for microfibril and elastic fiber assembly.", "The Journal of biological chemistry", "2005 Aug 26", "Cain SA, Baldock C, Gallagher J, Morgan A, Bax DV, Weiss AS, Shuttleworth CA, Kielty CM", "protein_xref_pubmed", "15980072", "glycan_xref_matrixdb", "GAG_1" ], [ "P12111-1", "Structure of recombinant N-terminal globule of type VI collagen alpha 3 chain and its binding to heparin and hyaluronan.", "The EMBO journal", "1992 Dec", "Specks U, Mayer U, Nischt R, Spissinger T, Mann K, Timpl R, Engel J, Chu ML", "protein_xref_pubmed", "1425570", "glycan_xref_matrixdb", "GAG_9" ], [ "P05121-1", "Functional interaction of plasminogen activator inhibitor type 1 (PAI-1) and heparin.", "Biochemistry", "1991 Jan 29", "Ehrlich HJ, Keijer J, Preissner KT, Gebbink RK, Pannekoek H", "protein_xref_pubmed", "1703436", "glycan_xref_matrixdb", "GAG_1" ], [ "P12644-1", "Cell-surface heparan sulfate proteoglycans potentiate chordin antagonism of bone morphogenetic protein signaling and are necessary for cellular uptake of chordin.", "The Journal of biological chemistry", "2004 Dec 3", "Jasuja R, Allen BL, Pappano WN, Rapraeger AC, Greenspan DS", "protein_xref_pubmed", "15381701", "glycan_xref_matrixdb", "GAG_1" ], [ "P12111-1", "Structure of recombinant N-terminal globule of type VI collagen alpha 3 chain and its binding to heparin and hyaluronan.", "The EMBO journal", "1992 Dec", "Specks U, Mayer U, Nischt R, Spissinger T, Mann K, Timpl R, Engel J, Chu ML", "protein_xref_pubmed", "1425570", "glycan_xref_matrixdb", "GAG_1" ], [ "P22301-1", "Heparin and heparan sulfate bind interleukin-10 and modulate its activity.", "Blood", "2000 Sep 1", "Salek-Ardakani S, Arrand JR, Shaw D, Mackett M", "protein_xref_pubmed", "10961890", "glycan_xref_matrixdb", "GAG_1" ], [ "Q9BZV3-1", "Spacrcan binding to hyaluronan and other glycosaminoglycans. Molecular and biochemical studies.", "The Journal of biological chemistry", "2004 May 28", "Chen Q, Cai S, Shadrach KG, Prestwich GD, Hollyfield JG", "protein_xref_pubmed", "15044457", "glycan_xref_matrixdb", "GAG_9" ], [ "P21980-1", "Transglutaminase-2 interaction with heparin: identification of a heparin binding site that regulates cell adhesion to fibronectin-transglutaminase-2 matrix.", "The Journal of biological chemistry", "2012 May 25", "Lortat-Jacob H, Burhan I, Scarpellini A, Thomas A, Imberty A, Vives RR, Johnson T, Gutierrez A, Verderio EA", "protein_xref_pubmed", "22442151", "glycan_xref_matrixdb", "GAG_1" ], [ "Q9BZV3-1", "Spacrcan binding to hyaluronan and other glycosaminoglycans. Molecular and biochemical studies.", "The Journal of biological chemistry", "2004 May 28", "Chen Q, Cai S, Shadrach KG, Prestwich GD, Hollyfield JG", "protein_xref_pubmed", "15044457", "glycan_xref_matrixdb", "GAG_1" ], [ "P22105-3", "Identification and characterization of a conformational heparin-binding site involving two fibronectin type III modules of bovine tenascin-X.", "The Journal of biological chemistry", "2001 May 11", "Lethias C, Elefteriou F, Parsiegla G, Exposito JY, Garrone R", "protein_xref_pubmed", "11278641", "glycan_xref_matrixdb", "GAG_1" ], [ "P09038-4", "Identification of the basic fibroblast growth factor binding sequence in fibroblast heparan sulfate.", "The Journal of biological chemistry", "1992 May 25", "Turnbull JE, Fernig DG, Ke Y, Wilkinson MC, Gallagher JT", "protein_xref_pubmed", "1587820", "glycan_xref_matrixdb", "GAG_1" ], [ "P08246-1", "Heparin protects cathepsin G against inhibition by protein proteinase inhibitors.", "The Journal of biological chemistry", "1994 Nov 25", "Ermolieff J, Boudier C, Laine A, Meyer B, Bieth JG", "protein_xref_pubmed", "7961933", "glycan_xref_matrixdb", "GAG_1" ], [ "P15502-3", "Heparan sulphate interacts with tropoelastin, with some tropoelastin peptides and is present in human dermis elastic fibers.", "Matrix biology : journal of the International Society for Matrix Biology", "2005 Feb", "Gheduzzi D, Guerra D, Bochicchio B, Pepe A, Tamburro AM, Quaglino D, Mithieux S, Weiss AS, Pasquali Ronchetti I", "protein_xref_pubmed", "15748998", "glycan_xref_matrixdb", "GAG_2" ], [ "P08311-1", "Heparin strongly decreases the rate of inhibition of neutrophil elastase by alpha 1-proteinase inhibitor.", "The Journal of biological chemistry", "1991 Aug 15", "Frommherz KJ, Faller B, Bieth JG", "protein_xref_pubmed", "1869557", "glycan_xref_matrixdb", "GAG_1" ], [ "P20849-1", "Characterization of recombinant amino-terminal NC4 domain of human collagen IX: interaction with glycosaminoglycans and cartilage oligomeric matrix protein.", "The Journal of biological chemistry", "2004 Jun 4", "Pihlajamaa T, Lankinen H, Ylostalo J, Valmu L, Jaalinoja J, Zaucke F, Spitznagel L, Gosling S, Puustinen A, Morgelin M, Peranen J, Maurer P, Ala-Kokko L, Kilpelainen I", "protein_xref_pubmed", "15047691", "glycan_xref_matrixdb", "GAG_1" ], [ "P07996-1", "The first draft of the endostatin interaction network.", "The Journal of biological chemistry", "2009 Aug 14", "Faye C, Chautard E, Olsen BR, Ricard-Blum S", "protein_xref_pubmed", "19542224", "glycan_xref_matrixdb", "GAG_3" ], [ "P28799-1", "Defining elastic fiber interactions by molecular fishing: an affinity purification and mass spectrometry approach.", "Molecular & cellular proteomics : MCP", "2009 Dec", "Cain SA, McGovern A, Small E, Ward LJ, Baldock C, Shuttleworth A, Kielty CM", "protein_xref_pubmed", "19755719", "glycan_xref_matrixdb", "GAG_1" ], [ "Q96GW7-1", "Transport of a hyaluronan-binding protein in brain tissue.", "Matrix biology : journal of the International Society for Matrix Biology", "2009 Sep", "Kappler J, Hegener O, Baader SL, Franken S, Gieselmann V, Haberlein H, Rauch U", "protein_xref_pubmed", "19576282", "glycan_xref_matrixdb", "GAG_9" ], [ "P05230-1", "Direct binding of integrin alphavbeta3 to FGF1 plays a role in FGF1 signaling.", "The Journal of biological chemistry", "2008 Jun 27", "Mori S, Wu CY, Yamaji S, Saegusa J, Shi B, Ma Z, Kuwabara Y, Lam KS, Isseroff RR, Takada YK, Takada Y", "protein_xref_pubmed", "18441324", "glycan_xref_matrixdb", "GAG_1" ], [ "P12643-1", "Human bone morphogenetic protein 2 contains a heparin-binding site which modifies its biological activity.", "European journal of biochemistry", "1996 Apr 1", "Ruppert R, Hoffmann E, Sebald W", "protein_xref_pubmed", "8620887", "glycan_xref_matrixdb", "GAG_1" ], [ "P09038-4", "Direct isolation and sequencing of specific protein-binding glycosaminoglycans.", "Nature medicine", "2001 Jan", "Keiser N, Venkataraman G, Shriver Z, Sasisekharan R", "protein_xref_pubmed", "11135627", "glycan_xref_matrixdb", "GAG_1" ], [ "P98066-1", "A method for the non-covalent immobilization of heparin to surfaces.", "Analytical biochemistry", "2004 Jul 1", "Mahoney DJ, Whittle JD, Milner CM, Clark SJ, Mulloy B, Buttle DJ, Jones GC, Day AJ, Short RD", "protein_xref_pubmed", "15183770", "glycan_xref_matrixdb", "GAG_9" ], [ "Q96GW7-1", "Transport of a hyaluronan-binding protein in brain tissue.", "Matrix biology : journal of the International Society for Matrix Biology", "2009 Sep", "Kappler J, Hegener O, Baader SL, Franken S, Gieselmann V, Haberlein H, Rauch U", "protein_xref_pubmed", "19576282", "glycan_xref_matrixdb", "GAG_1" ], [ "Q15113-1", "Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix.", "The Biochemical journal", "2014 Jan 1", "Salza R, Peysselon F, Chautard E, Faye C, Moschcovich L, Weiss T, Perrin-Cocon L, Lotteau V, Kessler E, Ricard-Blum S", "protein_xref_pubmed", "24117177", "glycan_xref_matrixdb", "GAG_9" ], [ "Q15113-1", "Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix.", "The Biochemical journal", "2014 Jan 1", "Salza R, Peysselon F, Chautard E, Faye C, Moschcovich L, Weiss T, Perrin-Cocon L, Lotteau V, Kessler E, Ricard-Blum S", "protein_xref_pubmed", "24117177", "glycan_xref_matrixdb", "GAG_1" ], [ "Q15113-1", "Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix.", "The Biochemical journal", "2014 Jan 1", "Salza R, Peysselon F, Chautard E, Faye C, Moschcovich L, Weiss T, Perrin-Cocon L, Lotteau V, Kessler E, Ricard-Blum S", "protein_xref_pubmed", "24117177", "glycan_xref_matrixdb", "GAG_2" ], [ "Q15113-1", "Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix.", "The Biochemical journal", "2014 Jan 1", "Salza R, Peysselon F, Chautard E, Faye C, Moschcovich L, Weiss T, Perrin-Cocon L, Lotteau V, Kessler E, Ricard-Blum S", "protein_xref_pubmed", "24117177", "glycan_xref_matrixdb", "GAG_3" ], [ "Q15113-1", "Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix.", "The Biochemical journal", "2014 Jan 1", "Salza R, Peysselon F, Chautard E, Faye C, Moschcovich L, Weiss T, Perrin-Cocon L, Lotteau V, Kessler E, Ricard-Blum S", "protein_xref_pubmed", "24117177", "glycan_xref_matrixdb", "GAG_4" ], [ "P14210-1", "Interaction of hepatocyte growth factor with heparan sulfate. Elucidation of the major heparan sulfate structural determinants.", "The Journal of biological chemistry", "1994 Apr 15", "Lyon M, Deakin JA, Mizuno K, Nakamura T, Gallagher JT", "protein_xref_pubmed", "8157651", "glycan_xref_matrixdb", "GAG_1" ], [ "P04085-1", "Characterization of heparin and heparan sulfate domains binding to the long splice variant of platelet-derived growth factor A chain.", "The Journal of biological chemistry", "1997 Feb 28", "Feyzi E, Lustig F, Fager G, Spillmann D, Lindahl U, Salmivirta M", "protein_xref_pubmed", "9038157", "glycan_xref_matrixdb", "GAG_1" ], [ "P02751-15", "Binding of heparan sulfate to type V collagen. A mechanism of cell-substrate adhesion.", "The Journal of biological chemistry", "1989 May 15", "LeBaron RG, Hook A, Esko JD, Gay S, Hook M", "protein_xref_pubmed", "2524477", "glycan_xref_matrixdb", "GAG_1" ], [ "P02751-15", "Binding of heparan sulfate to type V collagen. A mechanism of cell-substrate adhesion.", "The Journal of biological chemistry", "1989 May 15", "LeBaron RG, Hook A, Esko JD, Gay S, Hook M", "protein_xref_pubmed", "2524477", "glycan_xref_matrixdb", "GAG_2" ], [ "P02776-1", "Specific binding of the chemokine platelet factor 4 to heparan sulfate.", "The Journal of biological chemistry", "1997 Aug 15", "Stringer SE, Gallagher JT", "protein_xref_pubmed", "9252363", "glycan_xref_matrixdb", "GAG_1" ], [ "P02776-1", "Specific binding of the chemokine platelet factor 4 to heparan sulfate.", "The Journal of biological chemistry", "1997 Aug 15", "Stringer SE, Gallagher JT", "protein_xref_pubmed", "9252363", "glycan_xref_matrixdb", "GAG_2" ], [ "P03973-1", "Heparin-induced conformational change and activation of mucus proteinase inhibitor.", "Biochemistry", "1992 Sep 8", "Faller B, Mely Y, Gerard D, Bieth JG", "protein_xref_pubmed", "1525165", "glycan_xref_matrixdb", "GAG_1" ], [ "P02751-15", "Structural domains of heparan sulphate for specific recognition of the C-terminal heparin-binding domain of human plasma fibronectin (HEPII).", "The Biochemical journal", "1996 Aug 1", "Walker A, Gallagher JT", "protein_xref_pubmed", "8760376", "glycan_xref_matrixdb", "GAG_2" ], [ "P03973-1", "Interaction of secretory leukocyte protease inhibitor with heparin inhibits proteases involved in asthma.", "The Journal of biological chemistry", "1998 May 29", "Fath MA, Wu X, Hileman RE, Linhardt RJ, Kashem MA, Nelson RM, Wright CD, Abraham WM", "protein_xref_pubmed", "9593692", "glycan_xref_matrixdb", "GAG_3" ], [ "P05231-1", "Characterization of the heparin-binding properties of IL-6.", "Journal of immunology (Baltimore, Md. : 1950)", "2000 Nov 15", "Mummery RS, Rider CC", "protein_xref_pubmed", "11067924", "glycan_xref_matrixdb", "GAG_1" ], [ "Q16787-2", "A unique sequence of the laminin alpha 3 G domain binds to heparin and promotes cell adhesion through syndecan-2 and -4.", "The Journal of biological chemistry", "2001 Aug 3", "Utani A, Nomizu M, Matsuura H, Kato K, Kobayashi T, Takeda U, Aota S, Nielsen PK, Shinkai H", "protein_xref_pubmed", "11373281", "glycan_xref_matrixdb", "GAG_1" ], [ "P00441-1", "Binding of human extracellular superoxide dismutase C to sulphated glycosaminoglycans.", "The Biochemical journal", "1988 Nov 15", "Karlsson K, Lindahl U, Marklund SL", "protein_xref_pubmed", "3223905", "glycan_xref_matrixdb", "GAG_3" ], [ "P02751-15", "Heparin-dependent regulation of fibronectin matrix conformation.", "Matrix biology : journal of the International Society for Matrix Biology", "2014 Feb", "Hubbard B, Buczek-Thomas JA, Nugent MA, Smith ML", "protein_xref_pubmed", "24148804", "glycan_xref_matrixdb", "GAG_1" ], [ "P13611-1", "Fibrillin-1 interactions with heparin. Implications for microfibril and elastic fiber assembly.", "The Journal of biological chemistry", "2005 Aug 26", "Cain SA, Baldock C, Gallagher J, Morgan A, Bax DV, Weiss AS, Shuttleworth CA, Kielty CM", "protein_xref_pubmed", "15980072", "glycan_xref_matrixdb", "GAG_9" ], [ "P02751-15", "Transglutaminase-2 interaction with heparin: identification of a heparin binding site that regulates cell adhesion to fibronectin-transglutaminase-2 matrix.", "The Journal of biological chemistry", "2012 May 25", "Lortat-Jacob H, Burhan I, Scarpellini A, Thomas A, Imberty A, Vives RR, Johnson T, Gutierrez A, Verderio EA", "protein_xref_pubmed", "22442151", "glycan_xref_matrixdb", "GAG_1" ], [ "P22455-1", "Binding of heparin/heparan sulfate to fibroblast growth factor receptor 4.", "The Journal of biological chemistry", "2001 May 18", "Loo BM, Kreuger J, Jalkanen M, Lindahl U, Salmivirta M", "protein_xref_pubmed", "11278860", "glycan_xref_matrixdb", "GAG_1" ], [ "P04141-1", "Heparin-binding sites in granulocyte-macrophage colony-stimulating factor. Localization and regulation by histidine ionization.", "The Journal of biological chemistry", "2005 Sep 9", "Sebollela A, Cagliari TC, Limaverde GS, Chapeaurouge A, Sorgine MH, Coelho-Sampaio T, Ramos CH, Ferreira ST", "protein_xref_pubmed", "16027123", "glycan_xref_matrixdb", "GAG_1" ], [ "P02751-15", "Identification of a novel heparin-binding site in the alternatively spliced IIICS region of fibronectin: roles of integrins and proteoglycans in cell adhesion to fibronectin splice variants.", "Matrix biology : journal of the International Society for Matrix Biology", "2001 Feb", "Mostafavi-Pour Z, Askari JA, Whittard JD, Humphries MJ", "protein_xref_pubmed", "11246004", "glycan_xref_matrixdb", "GAG_2" ], [ "P08311-1", "Heparin protects cathepsin G against inhibition by protein proteinase inhibitors.", "The Journal of biological chemistry", "1994 Nov 25", "Ermolieff J, Boudier C, Laine A, Meyer B, Bieth JG", "protein_xref_pubmed", "7961933", "glycan_xref_matrixdb", "GAG_1" ], [ "P05067-1", "The amyloid beta-protein precursor and its mammalian homologues. Evidence for a zinc-modulated heparin-binding superfamily.", "The Journal of biological chemistry", "1994 Oct 28", "Bush AI, Pettingell WH Jr, de Paradis M, Tanzi RE, Wasco W", "protein_xref_pubmed", "7929392", "glycan_xref_matrixdb", "GAG_1" ], [ "P05230-1", "Interaction of fibroblast growth factor-1 and related peptides with heparan sulfate and its oligosaccharides.", "Archives of biochemistry and biophysics", "1997 Oct 15", "Fromm JR, Hileman RE, Weiler JM, Linhardt RJ", "protein_xref_pubmed", "9343372", "glycan_xref_matrixdb", "GAG_2" ], [ "P04114-1", "Vitronectin interaction with glycosaminoglycans. Kinetics, structural determinants, and role in binding to endothelial cells.", "The Journal of biological chemistry", "1999 Dec 31", "Francois PP, Preissner KT, Herrmann M, Haugland RP, Vaudaux P, Lew DP, Krause KH", "protein_xref_pubmed", "10608816", "glycan_xref_matrixdb", "GAG_1" ], [ "P05230-1", "Interaction of fibroblast growth factor-1 and related peptides with heparan sulfate and its oligosaccharides.", "Archives of biochemistry and biophysics", "1997 Oct 15", "Fromm JR, Hileman RE, Weiler JM, Linhardt RJ", "protein_xref_pubmed", "9343372", "glycan_xref_matrixdb", "GAG_1" ], [ "P21802-1", "Fibroblast growth factor receptors 1 and 2 interact differently with heparin/heparan sulfate. Implications for dynamic assembly of a ternary signaling complex.", "The Journal of biological chemistry", "2002 Aug 9", "Powell AK, Fernig DG, Turnbull JE", "protein_xref_pubmed", "12034712", "glycan_xref_matrixdb", "GAG_1" ], [ "P08253-1", "The hemopexin-like domain (C domain) of human gelatinase A (matrix metalloproteinase-2) requires Ca2+ for fibronectin and heparin binding. Binding properties of recombinant gelatinase A C domain to extracellular matrix and basement membrane components.", "The Journal of biological chemistry", "1997 Mar 14", "Wallon UM, Overall CM", "protein_xref_pubmed", "9054449", "glycan_xref_matrixdb", "GAG_2" ], [ "P08253-1", "Human progelatinase A can be activated by autolysis at a rate that is concentration-dependent and enhanced by heparin bound to the C-terminal domain.", "European journal of biochemistry", "1993 Dec 1", "Crabbe T, Ioannou C, Docherty AJ", "protein_xref_pubmed", "8269931", "glycan_xref_matrixdb", "GAG_1" ], [ "P20908-1", "Molecular features of the collagen V heparin binding site.", "The Journal of biological chemistry", "1998 Jun 12", "Delacoux F, Fichard A, Geourjon C, Garrone R, Ruggiero F", "protein_xref_pubmed", "9614116", "glycan_xref_matrixdb", "GAG_1" ], [ "P38567-1", "A comprehensive model of hyaluronan turnover in the mouse.", "Matrix biology : journal of the International Society for Matrix Biology", "2012 Mar", "Jadin L, Bookbinder LH, Frost GI", "protein_xref_pubmed", "22142621", "glycan_xref_matrixdb", "GAG_9" ], [ "P14210-1", "Interaction of hepatocyte growth factor with heparan sulfate. Elucidation of the major heparan sulfate structural determinants.", "The Journal of biological chemistry", "1994 Apr 15", "Lyon M, Deakin JA, Mizuno K, Nakamura T, Gallagher JT", "protein_xref_pubmed", "8157651", "glycan_xref_matrixdb", "GAG_2" ], [ "P02751-15", "The first draft of the endostatin interaction network.", "The Journal of biological chemistry", "2009 Aug 14", "Faye C, Chautard E, Olsen BR, Ricard-Blum S", "protein_xref_pubmed", "19542224", "glycan_xref_matrixdb", "GAG_1" ], [ "P01008-1", "Binding of high affinity heparin to antithrombin III. Stopped flow kinetic studies of the binding interaction.", "The Journal of biological chemistry", "1981 Nov 10", "Olson ST, Srinivasan KR, Bjork I, Shore JD", "protein_xref_pubmed", "7287752", "glycan_xref_matrixdb", "GAG_1" ], [ "P21980-1", "The first draft of the endostatin interaction network.", "The Journal of biological chemistry", "2009 Aug 14", "Faye C, Chautard E, Olsen BR, Ricard-Blum S", "protein_xref_pubmed", "19542224", "glycan_xref_matrixdb", "GAG_2" ], [ "P21980-1", "The first draft of the endostatin interaction network.", "The Journal of biological chemistry", "2009 Aug 14", "Faye C, Chautard E, Olsen BR, Ricard-Blum S", "protein_xref_pubmed", "19542224", "glycan_xref_matrixdb", "GAG_1" ], [ "P16109-1", "Differential interactions of heparin and heparan sulfate glycosaminoglycans with the selectins. Implications for the use of unfractionated and low molecular weight heparins as therapeutic agents.", "The Journal of clinical investigation", "1998 Feb 15", "Koenig A, Norgard-Sumnicht K, Linhardt R, Varki A", "protein_xref_pubmed", "9466983", "glycan_xref_matrixdb", "GAG_2" ], [ "P09038-4", "Identification of the basic fibroblast growth factor binding sequence in fibroblast heparan sulfate.", "The Journal of biological chemistry", "1992 May 25", "Turnbull JE, Fernig DG, Ke Y, Wilkinson MC, Gallagher JT", "protein_xref_pubmed", "1587820", "glycan_xref_matrixdb", "GAG_2" ], [ "P08581-1", "Dissociation of heparan sulfate and receptor binding domains of hepatocyte growth factor reveals that heparan sulfate-c-met interaction facilitates signaling.", "The Journal of biological chemistry", "2001 Aug 31", "Rubin JS, Day RM, Breckenridge D, Atabey N, Taylor WG, Stahl SJ, Wingfield PT, Kaufman JD, Schwall R, Bottaro DP", "protein_xref_pubmed", "11435444", "glycan_xref_matrixdb", "GAG_1" ], [ "P08581-1", "Dissociation of heparan sulfate and receptor binding domains of hepatocyte growth factor reveals that heparan sulfate-c-met interaction facilitates signaling.", "The Journal of biological chemistry", "2001 Aug 31", "Rubin JS, Day RM, Breckenridge D, Atabey N, Taylor WG, Stahl SJ, Wingfield PT, Kaufman JD, Schwall R, Bottaro DP", "protein_xref_pubmed", "11435444", "glycan_xref_matrixdb", "GAG_2" ], [ "P22455-1", "Binding of heparin/heparan sulfate to fibroblast growth factor receptor 4.", "The Journal of biological chemistry", "2001 May 18", "Loo BM, Kreuger J, Jalkanen M, Lindahl U, Salmivirta M", "protein_xref_pubmed", "11278860", "glycan_xref_matrixdb", "GAG_2" ], [ "Q9Y215-1", "Anchorage of collagen-tailed acetylcholinesterase to the extracellular matrix is mediated by heparan sulfate proteoglycans.", "The Journal of cell biology", "1985 Sep", "Brandan E, Maldonado M, Garrido J, Inestrosa NC", "protein_xref_pubmed", "3161900", "glycan_xref_matrixdb", "GAG_2" ], [ "P05155-1", "Heparin binding and augmentation of C1 inhibitor activity.", "Archives of biochemistry and biophysics", "1999 Jan 15", "Caldwell EE, Andreasen AM, Blietz MA, Serrahn JN, VanderNoot V, Park Y, Yu G, Linhardt RJ, Weiler JM", "protein_xref_pubmed", "9882449", "glycan_xref_matrixdb", "GAG_1" ], [ "Q14767-1", "LTBP-2 has multiple heparin/heparan sulfate binding sites.", "Matrix biology : journal of the International Society for Matrix Biology", "2010 Jun", "Parsi MK, Adams JR, Whitelock J, Gibson MA", "protein_xref_pubmed", "20382221", "glycan_xref_matrixdb", "GAG_1" ], [ "P35556-1", "Fibrillin-1 and -2 contain heparin-binding sites important for matrix deposition and that support cell attachment.", "The Biochemical journal", "2003 Oct 15", "Ritty TM, Broekelmann TJ, Werneck CC, Mecham RP", "protein_xref_pubmed", "12837131", "glycan_xref_matrixdb", "GAG_1" ], [ "P07858-1", "Cathepsin B activity regulation. Heparin-like glycosaminogylcans protect human cathepsin B from alkaline pH-induced inactivation.", "The Journal of biological chemistry", "2001 Jan 12", "Almeida PC, Nantes IL, Chagas JR, Rizzi CC, Faljoni-Alario A, Carmona E, Juliano L, Nader HB, Tersariol IL", "protein_xref_pubmed", "11016923", "glycan_xref_matrixdb", "GAG_1" ], [ "Q9Y215-1", "Anchorage of collagen-tailed acetylcholinesterase to the extracellular matrix is mediated by heparan sulfate proteoglycans.", "The Journal of cell biology", "1985 Sep", "Brandan E, Maldonado M, Garrido J, Inestrosa NC", "protein_xref_pubmed", "3161900", "glycan_xref_matrixdb", "GAG_1" ], [ "P01008-1", "Direct isolation and sequencing of specific protein-binding glycosaminoglycans.", "Nature medicine", "2001 Jan", "Keiser N, Venkataraman G, Shriver Z, Sasisekharan R", "protein_xref_pubmed", "11135627", "glycan_xref_matrixdb", "GAG_1" ], [ "Q02297-1", "Specific structural features of heparan sulfate proteoglycans potentiate neuregulin-1 signaling.", "The Journal of biological chemistry", "2005 Jan 7", "Pankonin MS, Gallagher JT, Loeb JA", "protein_xref_pubmed", "15528194", "glycan_xref_matrixdb", "GAG_1" ], [ "P02649-1", "Kinetics of apolipoprotein E isoforms-binding to the major glycosaminoglycans of the extracellular matrix.", "FEBS letters", "1999 Oct 15", "Shuvaev VV, Laffont I, Siest G", "protein_xref_pubmed", "10526164", "glycan_xref_matrixdb", "GAG_2" ], [ "P02649-1", "Kinetics of apolipoprotein E isoforms-binding to the major glycosaminoglycans of the extracellular matrix.", "FEBS letters", "1999 Oct 15", "Shuvaev VV, Laffont I, Siest G", "protein_xref_pubmed", "10526164", "glycan_xref_matrixdb", "GAG_3" ], [ "P02649-1", "Kinetics of apolipoprotein E isoforms-binding to the major glycosaminoglycans of the extracellular matrix.", "FEBS letters", "1999 Oct 15", "Shuvaev VV, Laffont I, Siest G", "protein_xref_pubmed", "10526164", "glycan_xref_matrixdb", "GAG_1" ], [ "P02649-1", "Kinetics of apolipoprotein E isoforms-binding to the major glycosaminoglycans of the extracellular matrix.", "FEBS letters", "1999 Oct 15", "Shuvaev VV, Laffont I, Siest G", "protein_xref_pubmed", "10526164", "glycan_xref_matrixdb", "GAG_4" ], [ "P22105-3", "The distribution of tenascin-X is distinct and often reciprocal to that of tenascin-C.", "The Journal of cell biology", "1994 Apr", "Matsumoto K, Saga Y, Ikemura T, Sakakura T, Chiquet-Ehrismann R", "protein_xref_pubmed", "7512972", "glycan_xref_matrixdb", "GAG_1" ], [ "P07996-1", "The first draft of the endostatin interaction network.", "The Journal of biological chemistry", "2009 Aug 14", "Faye C, Chautard E, Olsen BR, Ricard-Blum S", "protein_xref_pubmed", "19542224", "glycan_xref_matrixdb", "GAG_2" ], [ "P14151-1", "Calcium-dependent heparin-like ligands for L-selectin in nonlymphoid endothelial cells.", "Science (New York, N.Y.)", "1993 Jul 23", "Norgard-Sumnicht KE, Varki NM, Varki A", "protein_xref_pubmed", "7687382", "glycan_xref_matrixdb", "GAG_1" ], [ "P07996-1", "The first draft of the endostatin interaction network.", "The Journal of biological chemistry", "2009 Aug 14", "Faye C, Chautard E, Olsen BR, Ricard-Blum S", "protein_xref_pubmed", "19542224", "glycan_xref_matrixdb", "GAG_1" ] ] }, "readme": "Name\n - The Human Glycan Interaction Data Citations (MatrixDB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2023-02-28T20:56:50.670Z\n\nModified on\n - 2023-02-28T20:57:01.649Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Sylvie Ricard-Blum [sylvie.ricard-blum@univ-lyon1.fr]\n\nChecksum\n - \n\nUsability Domain\n - The Human Glycan Interaction data Citations (MatrixDB)] contains details of the publication present in the dataset The Human Glycan Interaction data Citations (MatrixDB) https://data.glygen.org/GLY_000332.\n\nDescription Domain\n Keywords\n - MatrixDB\n - Glycan Interaction\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_matrixdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_matrixdb.csv\n Output Subdomain\n Name: human_protein_citations_matrixdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_citations_matrixdb.csv\n Name: human_protein_citations_matrixdb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_citations_matrixdb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"63\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"73\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"21\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"73\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"73\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"73\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"6\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_citations_matrixdb.csv" }