{ "bcoid": "GLY_000717", "title": "Human O-Glucosylation Glycosylation Citations", "description": "The O-Glucosylation Glycosylation Citations dataset contains details of the publication present in the ...", "filename": "human_proteoform_citations_glycosylation_sites_o_gluc.csv", "filetype": "csv", "categories": { "molecule": [ "Proteoform" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P35555-1...", "POGLUT2 and ..." ], [ "P35556-1...", "POGLUT2 and ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "P35555-1", "POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of fibrillin-1.", "The Journal of biological chemistry", "2021 Sep", "Williamson DB, Sohn CJ, Ito A, Haltiwanger RS", "protein_xref_pubmed", "34411563", "protein_xref_glygen_ds", "GLY_000716", "G71142DF" ], [ "P35556-1", "POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of fibrillin-1.", "The Journal of biological chemistry", "2021 Sep", "Williamson DB, Sohn CJ, Ito A, Haltiwanger RS", "protein_xref_pubmed", "34411563", "protein_xref_glygen_ds", "GLY_000716", "G71142DF" ], [ "P46531-1", "Two novel protein O-glucosyltransferases that modify sites distinct from POGLUT1 and affect Notch trafficking and signaling.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 Sep 4", "Takeuchi H, Schneider M, Williamson DB, Ito A, Takeuchi M, Handford PA, Haltiwanger RS", "protein_xref_pubmed", "30127001", "protein_xref_glygen_ds", "GLY_000716", "G71142DF" ], [ "Q9UM47-1", "Two novel protein O-glucosyltransferases that modify sites distinct from POGLUT1 and affect Notch trafficking and signaling.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 Sep 4", "Takeuchi H, Schneider M, Williamson DB, Ito A, Takeuchi M, Handford PA, Haltiwanger RS", "protein_xref_pubmed", "30127001", "protein_xref_glygen_ds", "GLY_000716", "G71142DF" ], [ "Q14766-1", "POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of fibrillin-1.", "The Journal of biological chemistry", "2021 Sep", "Williamson DB, Sohn CJ, Ito A, Haltiwanger RS", "protein_xref_pubmed", "34411563", "protein_xref_glygen_ds", "GLY_000716", "G71142DF" ] ] }, "readme": "Name\n - Human O-Glucosylation Glycosylation Citations\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2023-02-28T15:39:52.735Z\n\nModified on\n - 2023-02-28T16:13:51.772Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Daniel Williamson [daniel.williamson25@uga.edu], Daniel Williamson [daniel.williamson25@uga.edu], Robert S Haltiwanger [rhalti@uga.edu]\n\nChecksum\n - \n\nUsability Domain\n - The O-Glucosylation Glycosylation Citations dataset contains details of the publication present in the dataset Human O-Glucosylation Glycosylation Sites https://data.glygen.org/GLY_000716, contributed by Daniel Williamson from Bob Haltiwanger's group.\n\nDescription Domain\n Keywords\n - O-Gluc\n - O-Glucosylation\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_o_gluc.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_o_gluc.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_sites_o_gluc.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_o_gluc.csv\n Name: human_proteoform_citations_glycosylation_sites_o_gluc.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_o_gluc.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"5\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"2\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"2\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"2\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"2\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"2\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_o_gluc.csv" }