{ "bcoid": "GLY_000714", "title": "Rat O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)", "description": "The Rat O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication ...", "filename": "rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Proteoform" ], "tags": [ "Protein Citations O-GlcNAc (O-GlcNAc Atlas)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A0G2JUA5-1...", "Quantitative..." ], [ "A0A0G2JY58-1...", "Polycomb rep..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" 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"27213235", "protein_xref_oglcnac_db", "F1LM47", "G49108TO" ], [ "G3V6S0-1", "Enrichment and site mapping of O-linked N-acetylglucosamine by a combination of chemical/enzymatic tagging, photochemical cleavage, and electron transfer dissociation mass spectrometry.", "Molecular & cellular proteomics : MCP", "2010 Jan", "Wang Z, Udeshi ND, O'Malley M, Shabanowitz J, Hunt DF, Hart GW", "protein_xref_pubmed", "19692427", "protein_xref_oglcnac_db", "G3V6S0", "G49108TO" ], [ "M0R7S5-1", "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.", "The Journal of pathology", "2017 Sep", "Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T", "protein_xref_pubmed", "28657654", "protein_xref_oglcnac_db", "M0R7S5", "G49108TO" ], [ "O08769-1", "O-GlcNAc glycosylation of p27(kip1) promotes astrocyte migration and functional recovery after spinal cord contusion.", "Experimental cell research", "2015 Dec 10", "Mao X, Zhang D, Tao T, Liu X, Sun X, Wang Y, Shen A", "protein_xref_pubmed", "26562163", "protein_xref_oglcnac_db", "O08769", "G49108TO" ], [ "O08984-1", "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "Molecular & cellular proteomics : MCP", "2002 Oct", "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "protein_xref_pubmed", "12438562", "protein_xref_oglcnac_db", "O08984", "G49108TO" ], [ "O35303-1", "Modulation of dynamin-related protein 1 (DRP1) function by increased O-linked-beta-N-acetylglucosamine modification (O-GlcNAc) in cardiac myocytes.", "The Journal of biological chemistry", "2012 Aug 24", "Gawlowski T, Suarez J, Scott B, Torres-Gonzalez M, Wang H, Schwappacher R, Han X, Yates JR 3rd, Hoshijima M, Dillmann W", "protein_xref_pubmed", "22745122", "protein_xref_oglcnac_db", "O35303", "G49108TO" ], [ "O54960-1", "NOS1AP O-GlcNAc Modification Involved in Neuron Apoptosis Induced by Excitotoxicity.", "International journal of molecular sciences", "2015 Jul 21", "Zhu L, Tao T, Zhang D, Liu X, Ke K, Shen A", "protein_xref_pubmed", "26197318", "protein_xref_oglcnac_db", "O54960", "G49108TO" ], [ "O70351-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "O70351", "G49108TO" ], [ "O70511-1", "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.", "The Journal of pathology", "2017 Sep", "Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T", "protein_xref_pubmed", "28657654", "protein_xref_oglcnac_db", "O70511", "G49108TO" ], [ "O88778-1", "Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain.", "Proceedings of the National Academy of Sciences of the United States of America", "2004 Sep 7", "Khidekel N, Ficarro SB, Peters EC, Hsieh-Wilson LC", "protein_xref_pubmed", "15340146", "protein_xref_oglcnac_db", "O88778", "G49108TO" ], [ "O88778-1", "Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.", "Nature chemical biology", "2007 Jun", "Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC", "protein_xref_pubmed", "17496889", "protein_xref_oglcnac_db", "O88778", "G49108TO" ], [ "P00185-1", "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "PloS one", "2013", "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "protein_xref_pubmed", "24098488", "protein_xref_oglcnac_db", "P00185", "G49108TO" ], [ "P00507-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P00507", "G49108TO" ], [ "P00507-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P00507", "G49108TO" ], [ "P02563-1", "O-linked GlcNAc modification of cardiac myofilament proteins: a novel regulator of myocardial contractile function.", "Circulation research", "2008 Dec 5", "Ramirez-Correa GA, Jin W, Wang Z, Zhong X, Gao WD, Dias WB, Vecoli C, Hart GW, Murphy AM", "protein_xref_pubmed", "18988896", "protein_xref_oglcnac_db", "P02563", "G49108TO" ], [ "P02563-1", "Removal of Abnormal Myofilament O-GlcNAcylation Restores Ca2+ Sensitivity in Diabetic Cardiac Muscle.", "Diabetes", "2015 Oct", "Ramirez-Correa GA, Ma J, Slawson C, Zeidan Q, Lugo-Fagundo NS, Xu M, Shen X, Gao WD, Caceres V, Chakir K, DeVine L, Cole RN, Marchionni L, Paolocci N, Hart GW, Murphy AM", "protein_xref_pubmed", "26109417", "protein_xref_oglcnac_db", "P02563", "G49108TO" ], [ "P02563-1", "Mapping of O-linked beta-N-acetylglucosamine modification sites in key contractile proteins of rat skeletal muscle.", "Proteomics", "2009 Apr", "Hedou J, Bastide B, Page A, Michalski JC, Morelle W", "protein_xref_pubmed", "19322778", "protein_xref_oglcnac_db", "P02563", "G49108TO" ], [ "P04636-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome 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O-GlcNAcylation Restores Ca2+ Sensitivity in Diabetic Cardiac Muscle.", "Diabetes", "2015 Oct", "Ramirez-Correa GA, Ma J, Slawson C, Zeidan Q, Lugo-Fagundo NS, Xu M, Shen X, Gao WD, Caceres V, Chakir K, DeVine L, Cole RN, Marchionni L, Paolocci N, Hart GW, Murphy AM", "protein_xref_pubmed", "26109417", "protein_xref_oglcnac_db", "P04692", "G49108TO" ], [ "P04797-1", "O-GlcNAcylation disrupts glyceraldehyde-3-phosphate dehydrogenase homo-tetramer formation and mediates its nuclear translocation.", "Biochimica et biophysica acta", "2009 Feb", "Park J, Han D, Kim K, Kang Y, Kim Y", "protein_xref_pubmed", "19022411", "protein_xref_oglcnac_db", "P04797", "G49108TO" ], [ "P04799-1", "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "PloS one", "2013", "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "protein_xref_pubmed", "24098488", "protein_xref_oglcnac_db", "P04799", "G49108TO" ], [ 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Effects of epinephrine and phorbol esters.", "Biochimica et biophysica acta", "2008 May", "Robles-Flores M, Melendez L, Garcia W, Mendoza-Hernandez G, Lam TT, Castaneda-Patlan C, Gonzalez-Aguilar H", "protein_xref_pubmed", "18295358", "protein_xref_oglcnac_db", "P05696", "G49108TO" ], [ "P07756-1", "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "PloS one", "2013", "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "protein_xref_pubmed", "24098488", "protein_xref_oglcnac_db", "P07756", "G49108TO" ], [ "P07895-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P07895", "G49108TO" ], [ "P07895-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P07895", "G49108TO" ], [ "P08461-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P08461", "G49108TO" ], [ "P08461-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P08461", "G49108TO" ], [ "P08503-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P08503", "G49108TO" ], [ "P08733-1", "O-linked GlcNAc modification of cardiac myofilament proteins: a novel regulator of myocardial contractile function.", "Circulation research", "2008 Dec 5", "Ramirez-Correa GA, Jin W, Wang Z, Zhong X, Gao WD, Dias WB, Vecoli C, Hart GW, Murphy AM", "protein_xref_pubmed", "18988896", "protein_xref_oglcnac_db", "P08733", "G49108TO" ], [ "P09215-1", "Posttranslational modifications on protein kinase c isozymes. Effects of epinephrine and phorbol esters.", "Biochimica et biophysica acta", "2008 May", "Robles-Flores M, Melendez L, Garcia W, Mendoza-Hernandez G, Lam TT, Castaneda-Patlan C, Gonzalez-Aguilar H", "protein_xref_pubmed", "18295358", "protein_xref_oglcnac_db", "P09215", "G49108TO" ], [ "P09216-1", "Posttranslational modifications on protein kinase c isozymes. Effects of epinephrine and phorbol esters.", "Biochimica et biophysica acta", "2008 May", "Robles-Flores M, Melendez L, Garcia W, Mendoza-Hernandez G, Lam TT, Castaneda-Patlan C, Gonzalez-Aguilar H", "protein_xref_pubmed", "18295358", "protein_xref_oglcnac_db", "P09216", "G49108TO" ], [ "P09217-1", "Posttranslational modifications on protein kinase c isozymes. Effects of epinephrine and phorbol esters.", "Biochimica et biophysica acta", "2008 May", "Robles-Flores M, Melendez L, Garcia W, Mendoza-Hernandez G, Lam TT, Castaneda-Patlan C, Gonzalez-Aguilar H", "protein_xref_pubmed", "18295358", "protein_xref_oglcnac_db", "P09217", "G49108TO" ], [ "P09605-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P09605", "G49108TO" ], [ "P09605-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P09605", "G49108TO" ], [ "P09951-1", "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "Molecular & cellular proteomics : MCP", "2002 Oct", "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "protein_xref_pubmed", "12438562", "protein_xref_oglcnac_db", "P09951", "G49108TO" ], [ "P09951-1", "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "Journal of neurochemistry", "1999 Jul", "Cole RN, Hart GW", "protein_xref_pubmed", "10386995", "protein_xref_oglcnac_db", "P09951", "G49108TO" ], [ "P10688-1", "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "PloS one", "2013", "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "protein_xref_pubmed", "24098488", "protein_xref_oglcnac_db", "P10688", "G49108TO" ], [ "P10719-1", "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "PloS one", "2013", "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "protein_xref_pubmed", "24098488", "protein_xref_oglcnac_db", "P10719", "G49108TO" ], [ "P10719-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P10719", "G49108TO" ], [ "P10719-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P10719", "G49108TO" ], [ "P10860-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P10860", "G49108TO" ], [ "P10860-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P10860", "G49108TO" ], [ "P10888-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P10888", "G49108TO" ], [ "P10888-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P10888", "G49108TO" ], [ "P11240-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P11240", "G49108TO" ], [ "P11884-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P11884", "G49108TO" ], [ "P11951-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P11951", "G49108TO" ], [ "P11951-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P11951", "G49108TO" ], [ "P11960-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P11960", "G49108TO" ], [ "P12007-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P12007", "G49108TO" ], [ "P12839-1", "Cytoplasmic O-GlcNAc modification of the head domain and the KSP repeat motif of the neurofilament protein neurofilament-H.", "The Journal of biological chemistry", "1996 Aug 23", "Dong DL, Xu ZS, Hart GW, Cleveland DW", "protein_xref_pubmed", "8702840", "protein_xref_oglcnac_db", "P12839", "G49108TO" ], [ "P12839-1", "Glycosylation of mammalian neurofilaments. Localization of multiple O-linked N-acetylglucosamine moieties on neurofilament polypeptides L and M.", "The Journal of biological chemistry", "1993 Aug 5", "Dong DL, Xu ZS, Chevrier MR, Cotter RJ, Cleveland DW, Hart GW", "protein_xref_pubmed", "8344946", "protein_xref_oglcnac_db", "P12839", "G49108TO" ], [ "P12939-1", "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "PloS one", "2013", "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "protein_xref_pubmed", "24098488", "protein_xref_oglcnac_db", "P12939", "G49108TO" ], [ "P13437-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P13437", "G49108TO" ], [ "P13437-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P13437", "G49108TO" ], [ "P13803-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P13803", "G49108TO" ], [ "P13803-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P13803", "G49108TO" ], [ "P14604-1", "O-GlcNAcomic Profiling Identifies Widespread O-Linked beta-N-Acetylglucosamine Modification (O-GlcNAcylation) in Oxidative Phosphorylation System Regulating Cardiac Mitochondrial Function.", "The Journal of biological chemistry", "2015 Dec 4", "Ma J, Liu T, Wei AC, Banerjee P, O'Rourke B, Hart GW", "protein_xref_pubmed", "26446791", "protein_xref_oglcnac_db", "P14604", "G49108TO" ], [ "P14604-1", "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.", "Journal of proteome research", "2016 Jul 1", "Ma J, Banerjee P, Whelan SA, Liu T, Wei AC, Ramirez-Correa G, McComb ME, Costello CE, O'Rourke B, Murphy A, Hart GW", "protein_xref_pubmed", "27213235", "protein_xref_oglcnac_db", "P14604", "G49108TO" ] ] }, "readme": "Name\n - Rat O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2023-02-27T21:08:01.227Z\n\nModified on\n - 2023-03-06T20:16:58.406Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Jungfeng Ma [junfeng.ma@georgetown.edu ]\n\nChecksum\n - \n\nUsability Domain\n - The Rat O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication present in the dataset Rat O-GlcNAc Glycosylation Sites (O-GlcNAc Atlas) https://data.glygen.org/GLY_000710, contributed by Jungfeng Ma's group.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Output Subdomain\n Name: rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n Name: rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"176\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"35\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"23\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"35\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"35\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"35\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"176\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv" }