{ "bcoid": "GLY_000712", "title": "Human O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)", "description": "The Human O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication ...", "filename": "human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Proteoform" ], "tags": [ "Protein Citations O-GlcNAc (O-GlcNAc Atlas)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "A0A087WXM9-1...", "A triarylpho..." ], [ "A0AV96-1...", "Quantitative..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, 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"32938750", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A3KN83-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A3KN83", "G49108TO" ], [ "A4D161-1", "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.", "The Journal of pathology", "2017 Sep", "Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T", "protein_xref_pubmed", "28657654", "protein_xref_oglcnac_db", "A4D161", "G49108TO" ], [ "A4FU49-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein 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"protein_xref_oglcnac_db", "A4UGR9", "G49108TO" ], [ "A5D8V7-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A5D8V7", "G49108TO" ], [ "A5YKK6-1", "Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites.", "Molecular & cellular proteomics : MCP", "2021", "Maynard JC, Chalkley RJ", "protein_xref_pubmed", "32938750", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A5YKK6-1", "Quantitative Profiling of Protein O-GlcNAcylation Sites by an Isotope-Tagged Cleavable Linker.", "ACS chemical biology", "2018 Aug 17", "Qin K, Zhu Y, Qin W, Gao J, Shao X, Wang YL, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "30059200", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A5YKK6-1", "Next-generation unnatural monosaccharides reveal that ESRRB O-GlcNAcylation regulates pluripotency of mouse embryonic stem cells.", "Nature communications", "2019 Sep 6", "Hao Y, Fan X, Shi Y, Zhang C, Sun DE, Qin K, Qin W, Zhou W, Chen X", "protein_xref_pubmed", "31492838", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A5YKK6-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A5YKK6-1", "A Chemoenzymatic Method Based on Easily Accessible Enzymes for Profiling Protein O-GlcNAcylation.", "Analytical chemistry", "2020 Jul 21", "Xu S, Sun F, Wu R", "protein_xref_pubmed", "32574038", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A5YKK6-1", "Highly Efficient Enrichment of O-GlcNAc Glycopeptides Based on Chemical Oxidation and Reversible Hydrazide Chemistry.", "Analytical chemistry", "2021 Dec 14", "Chen Y, Qin H, Yue X, Zhou J, Liu L, Nie Y, Ye M", "protein_xref_pubmed", "34846842", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A5YKK6-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A5YKK6", "G49108TO" ], [ "A6H8Y1-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A6H8Y1", "G49108TO" ], [ "A6NC57-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A6NC57", "G49108TO" ], [ "A6NC86-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A6NC86", "G49108TO" ], [ "A6NDG6-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A6NDG6", "G49108TO" ], [ "A6NDL7-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A6NDL7", "G49108TO" ], [ "A6NE01-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A6NE01", "G49108TO" ], [ "A6NEL2-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A6NEL2", "G49108TO" ], [ "A6NEL2-1", "A Chemoenzymatic Method Based on Easily Accessible Enzymes for Profiling Protein O-GlcNAcylation.", "Analytical chemistry", "2020 Jul 21", "Xu S, Sun F, Wu R", "protein_xref_pubmed", "32574038", "protein_xref_oglcnac_db", "A6NEL2", "G49108TO" ], [ "A6NF01-1", "Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites.", "Molecular & cellular proteomics : MCP", "2021", "Maynard JC, Chalkley RJ", "protein_xref_pubmed", "32938750", "protein_xref_oglcnac_db", "A6NF01", "G49108TO" ], [ "A6NF01-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "A6NF01", "G49108TO" ], [ "A6NF01-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A6NF01", "G49108TO" ], [ "A6NFQ2-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A6NFQ2", "G49108TO" ], [ "A6NGB9-1", "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.", "The Journal of pathology", "2017 Sep", "Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T", "protein_xref_pubmed", "28657654", "protein_xref_oglcnac_db", "A6NGB9", "G49108TO" ], [ "A6NGG3-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A6NGG3", "G49108TO" ], [ "A6NGU7-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "A6NGU7", "G49108TO" ], [ "A6NHR9-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A6NHR9", "G49108TO" ], [ "A6NIH7-1", "Aspartate Residues Far from the Active Site Drive O-GlcNAc Transferase Substrate Selection.", "Journal of the American Chemical Society", "2019 Aug 21", "Joiner CM, Levine ZG, Aonbangkhen C, Woo CM, Walker S", "protein_xref_pubmed", "31373491", "protein_xref_oglcnac_db", "A6NIH7", "G49108TO" ], [ "A6NIV6-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A6NIV6", "G49108TO" ], [ "A6NJ78-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A6NJ78", "G49108TO" ], [ "A6NKN8-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "A6NKN8", "G49108TO" ], [ "A6NKT7-1", "Next-generation unnatural monosaccharides reveal that ESRRB O-GlcNAcylation regulates pluripotency of mouse embryonic stem cells.", "Nature communications", "2019 Sep 6", "Hao Y, Fan X, Shi Y, Zhang C, Sun DE, Qin K, Qin W, Zhou W, Chen X", "protein_xref_pubmed", "31492838", "protein_xref_oglcnac_db", "A6NKT7", "G49108TO" ], [ "A6NNZ2-1", "Highly Efficient Enrichment of O-GlcNAc Glycopeptides Based on Chemical Oxidation and Reversible Hydrazide Chemistry.", "Analytical chemistry", "2021 Dec 14", "Chen Y, Qin H, Yue X, Zhou J, Liu L, Nie Y, Ye M", "protein_xref_pubmed", "34846842", "protein_xref_oglcnac_db", "A6NNZ2", "G49108TO" ], [ "A6PVY3-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A6PVY3", "G49108TO" ], [ "A6QL64-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "A6QL64", "G49108TO" ], [ "A7E2V4-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A7E2V4", "G49108TO" ], [ "A8CG34-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "Quantitative Profiling of Protein O-GlcNAcylation Sites by an Isotope-Tagged Cleavable Linker.", "ACS chemical biology", "2018 Aug 17", "Qin K, Zhu Y, Qin W, Gao J, Shao X, Wang YL, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "30059200", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "Aspartate Residues Far from the Active Site Drive O-GlcNAc Transferase Substrate Selection.", "Journal of the American Chemical Society", "2019 Aug 21", "Joiner CM, Levine ZG, Aonbangkhen C, Woo CM, Walker S", "protein_xref_pubmed", "31373491", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites.", "Molecular & cellular proteomics : MCP", "2021", "Maynard JC, Chalkley RJ", "protein_xref_pubmed", "32938750", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "A Novel Quantitative Mass Spectrometry Platform for Determining Protein O-GlcNAcylation Dynamics.", "Molecular & cellular proteomics : MCP", "2016 Jul", "Wang X, Yuan ZF, Fan J, Karch KR, Ball LE, Denu JM, Garcia BA", "protein_xref_pubmed", "27114449", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "O-GlcNAcylation Quantification of Certain Protein by the Proximity Ligation Assay and Clostridium perfringen OGA(D298N)(CpOGA(D298N)).", "ACS chemical biology", "2021 Jun 18", "Song J, Liu C, Wang X, Xu B, Liu X, Li Y, Xia J, Li Y, Zhang C, Li D, Sun H", "protein_xref_pubmed", "34105348", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "A Chemoenzymatic Method Based on Easily Accessible Enzymes for Profiling Protein O-GlcNAcylation.", "Analytical chemistry", "2020 Jul 21", "Xu S, Sun F, Wu R", "protein_xref_pubmed", "32574038", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "Combining high-energy C-trap dissociation and electron transfer dissociation for protein O-GlcNAc modification site assignment.", "Journal of proteome research", "2011 Sep 2", "Zhao P, Viner R, Teo CF, Boons GJ, Horn D, Wells L", "protein_xref_pubmed", "21740066", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "Next-generation unnatural monosaccharides reveal that ESRRB O-GlcNAcylation regulates pluripotency of mouse embryonic stem cells.", "Nature communications", "2019 Sep 6", "Hao Y, Fan X, Shi Y, Zhang C, Sun DE, Qin K, Qin W, Zhou W, Chen X", "protein_xref_pubmed", "31492838", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8CG34-1", "Artificial Cysteine S-Glycosylation Induced by Per-O-Acetylated Unnatural Monosaccharides during Metabolic Glycan Labeling.", "Angewandte Chemie (International ed. in English)", "2018 Feb 12", "Qin W, Qin K, Fan X, Peng L, Hong W, Zhu Y, Lv P, Du Y, Huang R, Han M, Cheng B, Liu Y, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "29237092", "protein_xref_oglcnac_db", "A8CG34", "G49108TO" ], [ "A8MPP1-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "A8MPP1", "G49108TO" ], [ "A8MTJ3-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A8MTJ3", "G49108TO" ], [ "A8MUU9-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A8MUU9", "G49108TO" ], [ "A8MWD9-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "A8MWD9", "G49108TO" ], [ "A8MXV6-1", "Global profiling of O-GlcNAcylated and/or phosphorylated proteins in hepatoblastoma.", "Signal transduction and targeted therapy", "2019", "Song H, Ma J, Bian Z, Chen S, Zhu J, Wang J, Huang N, Yin M, Sun F, Xu M, Pan Q", "protein_xref_pubmed", "31637018", "protein_xref_oglcnac_db", "A8MXV6", "G49108TO" ], [ "A8MZA4-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "A8MZA4", "G49108TO" ], [ "B0I1T2-1", "Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag).", "Molecular & cellular proteomics : MCP", "2018 Apr", "Woo CM, Lund PJ, Huang AC, Davis MM, Bertozzi CR, Pitteri SJ", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "B0I1T2", "G49108TO" ], [ "B1AJZ9-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "B1AJZ9", "G49108TO" ], [ "B2RTY4-1", "Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites.", "Molecular & cellular proteomics : MCP", "2021", "Maynard JC, Chalkley RJ", "protein_xref_pubmed", "32938750", "protein_xref_oglcnac_db", "B2RTY4", "G49108TO" ], [ "B2RTY4-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "B2RTY4", "G49108TO" ], [ "B3KS81-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "B3KS81", "G49108TO" ], [ "B4DYI2-1", "An Isotope-Coded Photocleavable Probe for Quantitative Profiling of Protein O-GlcNAcylation.", "ACS chemical biology", "2019 Jan 18", "Li J, Li Z, Duan X, Qin K, Dang L, Sun S, Cai L, Hsieh-Wilson LC, Wu L, Yi W", "protein_xref_pubmed", "30620550", "protein_xref_oglcnac_db", "B4DYI2", "G49108TO" ], [ "B7Z368-1", "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.", "Chemical communications (Cambridge, England)", "2018 Dec 6", "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W", "protein_xref_pubmed", "30379171", "protein_xref_oglcnac_db", "B7Z368", "G49108TO" ], [ "E9PAV3-1", "A new tandem enrichment strategy for the simultaneous profiling of O-GlcNAcylation and phosphorylation in RNA-binding proteome.", "The Analyst", "2021 Feb 22", "Fan Z, Li J, Liu T, Zhang Z, Qin W, Qian X", "protein_xref_pubmed", "33465208", "protein_xref_oglcnac_db", "E9PAV3", "G49108TO" ] ] }, "readme": "Name\n - Human O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2023-02-27T21:08:01.227Z\n\nModified on\n - 2023-03-06T20:15:55.384Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Jungfeng Ma [junfeng.ma@georgetown.edu ]\n\nChecksum\n - \n\nUsability Domain\n - The Human O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication present in the dataset Human O-GlcNAc Glycosylation Sites (O-GlcNAc Atlas) https://data.glygen.org/GLY_000708, contributed by Jungfeng Ma's group.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n Name: human_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"3184\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"184\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"77\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"172\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"184\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"184\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"3184\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv" }