{ "bcoid": "GLY_000695", "title": "Rat Xref The O-GlcNAc Database", "description": "Rat Xref The O-GlcNAc Database contains rat (taxid:10116) UniProtKB canonical accessions mapped to the ...", "filename": "rat_protein_xref_oglcnac_db.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Proteoform" ], "tags": [ "The O-GlcNAc Database" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P09006-1...", "protein_xref..." ], [ "Q9JHY2-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P09006-1", "protein_xref_oglcnac_db", "P09006", "O-GlcNAc MCW" ], [ "Q9JHY2-1", "protein_xref_oglcnac_db", "Q9JHY2", "O-GlcNAc MCW" ], [ "D3ZIY3-1", "protein_xref_oglcnac_db", "D3ZIY3", "O-GlcNAc MCW" ], [ "Q9Z1Z9-1", "protein_xref_oglcnac_db", "Q9Z1Z9", "O-GlcNAc MCW" ], [ "D3ZN95-1", "protein_xref_oglcnac_db", "D3ZN95", "O-GlcNAc MCW" ], [ "Q5M834-1", "protein_xref_oglcnac_db", "Q5M834", "O-GlcNAc MCW" ], [ "F1LXA0-1", "protein_xref_oglcnac_db", "F1LXA0", "O-GlcNAc MCW" ], [ "Q66H76-1", "protein_xref_oglcnac_db", "Q66H76", "O-GlcNAc MCW" ], [ "B5DEL8-1", "protein_xref_oglcnac_db", "B5DEL8", "O-GlcNAc MCW" ], [ "Q66HA8-1", "protein_xref_oglcnac_db", "Q66HA8", "O-GlcNAc MCW" ], [ "P17425-1", "protein_xref_oglcnac_db", "P17425", "O-GlcNAc MCW" ], [ "P09951-1", "protein_xref_oglcnac_db", "P09951", "O-GlcNAc MCW" ], [ "Q00438-1", "protein_xref_oglcnac_db", "Q00438", "O-GlcNAc MCW" ], [ "P16638-1", "protein_xref_oglcnac_db", "P16638", "O-GlcNAc MCW" ], [ "Q9QWN8-1", "protein_xref_oglcnac_db", "Q9QWN8", "O-GlcNAc MCW" ], [ "G3V7M0-1", "protein_xref_oglcnac_db", "G3V7M0", "O-GlcNAc MCW" ], [ "P00185-1", "protein_xref_oglcnac_db", "P00185", "O-GlcNAc MCW" ], [ "P62944-1", "protein_xref_oglcnac_db", "P62944", "O-GlcNAc MCW" ], [ "Q9QYU4-1", "protein_xref_oglcnac_db", "Q9QYU4", "O-GlcNAc MCW" ], [ "D3ZZ68-1", "protein_xref_oglcnac_db", "D3ZZ68", "O-GlcNAc MCW" ], [ "Q63544-1", "protein_xref_oglcnac_db", "Q63544", "O-GlcNAc MCW" ], [ "P68136-1", "protein_xref_oglcnac_db", "P68136", "O-GlcNAc MCW" ], [ "P16290-1", "protein_xref_oglcnac_db", "P16290", "O-GlcNAc MCW" ], [ "Q9Z0V6-1", "protein_xref_oglcnac_db", "Q9Z0V6", "O-GlcNAc MCW" ], [ "P63086-1", "protein_xref_oglcnac_db", "P63086", "O-GlcNAc MCW" ], [ "D4A702-1", "protein_xref_oglcnac_db", "D4A702", "O-GlcNAc MCW" ], [ "Q6PDU7-1", "protein_xref_oglcnac_db", "Q6PDU7", "O-GlcNAc MCW" ], [ "Q60587-1", "protein_xref_oglcnac_db", "Q60587", "O-GlcNAc MCW" ], [ "Q91ZN1-1", "protein_xref_oglcnac_db", "Q91ZN1", "O-GlcNAc MCW" ], [ "P48500-1", "protein_xref_oglcnac_db", "P48500", "O-GlcNAc MCW" ], [ "Q6MG61-1", "protein_xref_oglcnac_db", "Q6MG61", "O-GlcNAc MCW" ], [ "P34058-1", "protein_xref_oglcnac_db", "P34058", "O-GlcNAc MCW" ], [ "A0A8I5Y9G0-1", "protein_xref_oglcnac_db", "A0A8I5Y9G0", "O-GlcNAc MCW" ], [ "P84817-1", "protein_xref_oglcnac_db", "P84817", "O-GlcNAc MCW" ], [ "P15429-1", "protein_xref_oglcnac_db", "P15429", "O-GlcNAc MCW" ], [ "M0R5J4-1", "protein_xref_oglcnac_db", "M0R5J4", "O-GlcNAc MCW" ], [ "P26684-1", "protein_xref_oglcnac_db", "P26684", "O-GlcNAc MCW" ], [ "Q00900-1", "protein_xref_oglcnac_db", "Q00900", "O-GlcNAc MCW" ], [ "Q5BK63-1", "protein_xref_oglcnac_db", "Q5BK63", "O-GlcNAc MCW" ], [ "D4A8X8-1", "protein_xref_oglcnac_db", "D4A8X8", "O-GlcNAc MCW" ], [ "Q9JJP9-1", "protein_xref_oglcnac_db", "Q9JJP9", "O-GlcNAc MCW" ], [ "Q62622-1", "protein_xref_oglcnac_db", "Q62622", "O-GlcNAc MCW" ], [ "Q63046-1", "protein_xref_oglcnac_db", "Q63046", "O-GlcNAc MCW" ], [ "D4A0T0-1", "protein_xref_oglcnac_db", "D4A0T0", "O-GlcNAc MCW" ], [ "D4AA63-1", "protein_xref_oglcnac_db", "D4AA63", "O-GlcNAc MCW" ], [ "Q2EJA0-1", "protein_xref_oglcnac_db", "Q2EJA0", "O-GlcNAc MCW" ], [ "Q9JIH7-1", "protein_xref_oglcnac_db", "Q9JIH7", "O-GlcNAc MCW" ], [ "P15999-1", "protein_xref_oglcnac_db", "P15999", "O-GlcNAc MCW" ], [ "P10860-1", "protein_xref_oglcnac_db", "P10860", "O-GlcNAc MCW" ], [ "P16086-1", "protein_xref_oglcnac_db", "P16086", "O-GlcNAc MCW" ], [ "Q5FVJ0-1", "protein_xref_oglcnac_db", "Q5FVJ0", "O-GlcNAc MCW" ], [ "Q63704-1", "protein_xref_oglcnac_db", "Q63704", "O-GlcNAc MCW" ], [ "P37377-1", "protein_xref_oglcnac_db", "P37377", "O-GlcNAc MCW" ], [ "Q66HD0-1", "protein_xref_oglcnac_db", "Q66HD0", "O-GlcNAc MCW" ], [ "A0A8I6AL23-1", "protein_xref_oglcnac_db", "A0A8I6AL23", "O-GlcNAc MCW" ], [ "Q9QXQ0-1", "protein_xref_oglcnac_db", "Q9QXQ0", "O-GlcNAc MCW" ], [ "P12839-1", "protein_xref_oglcnac_db", "P12839", "O-GlcNAc MCW" ], [ "Q80WE1-1", "protein_xref_oglcnac_db", "Q80WE1", "O-GlcNAc MCW" ], [ "Q641Y2-1", "protein_xref_oglcnac_db", "Q641Y2", "O-GlcNAc MCW" ], [ "Q4KLH5-1", "protein_xref_oglcnac_db", "Q4KLH5", "O-GlcNAc MCW" ], [ "P27139-1", "protein_xref_oglcnac_db", "P27139", "O-GlcNAc MCW" ], [ "Q5XI32-1", "protein_xref_oglcnac_db", "Q5XI32", "O-GlcNAc MCW" ], [ "Q5XI38-1", "protein_xref_oglcnac_db", "Q5XI38", "O-GlcNAc MCW" ], [ "P97541-1", "protein_xref_oglcnac_db", "P97541", "O-GlcNAc MCW" ], [ "P49791-1", "protein_xref_oglcnac_db", "P49791", "O-GlcNAc MCW" ], [ "P25235-1", "protein_xref_oglcnac_db", "P25235", "O-GlcNAc MCW" ], [ "F1LTN6-1", "protein_xref_oglcnac_db", "F1LTN6", "O-GlcNAc MCW" ], [ "Q5BJQ0-1", "protein_xref_oglcnac_db", "Q5BJQ0", "O-GlcNAc MCW" ], [ "Q9WVJ6-1", "protein_xref_oglcnac_db", "Q9WVJ6", "O-GlcNAc MCW" ], [ "A0A1W2Q641-1", "protein_xref_oglcnac_db", "A0A1W2Q641", "O-GlcNAc MCW" ], [ "P00507-1", "protein_xref_oglcnac_db", "P00507", "O-GlcNAc MCW" ], [ "Q6IMY8-1", "protein_xref_oglcnac_db", "Q6IMY8", "O-GlcNAc MCW" ], [ "P48679-1", "protein_xref_oglcnac_db", "P48679", "O-GlcNAc MCW" ], [ "P48675-1", "protein_xref_oglcnac_db", "P48675", "O-GlcNAc MCW" ], [ "B2RYS2-1", "protein_xref_oglcnac_db", "B2RYS2", "O-GlcNAc MCW" ], [ "P55260-1", "protein_xref_oglcnac_db", "P55260", "O-GlcNAc MCW" ], [ "P14882-1", "protein_xref_oglcnac_db", "P14882", "O-GlcNAc MCW" ], [ "Q6IFV1-1", "protein_xref_oglcnac_db", "Q6IFV1", "O-GlcNAc MCW" ], [ "Q9QX74-1", "protein_xref_oglcnac_db", "Q9QX74", "O-GlcNAc MCW" ], [ "P36201-1", "protein_xref_oglcnac_db", "P36201", "O-GlcNAc MCW" ], [ "P38062-1", "protein_xref_oglcnac_db", "P38062", "O-GlcNAc MCW" ], [ "O08769-1", "protein_xref_oglcnac_db", "O08769", "O-GlcNAc MCW" ], [ "P14480-1", "protein_xref_oglcnac_db", "P14480", "O-GlcNAc MCW" ], [ "P05708-1", "protein_xref_oglcnac_db", "P05708", "O-GlcNAc MCW" ] ] }, "readme": "Name\n - Rat Xref The O-GlcNAc Database\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2022-09-06T16:46:47.904415\n\nModified on\n - 2022-09-26T09:08:12.737290\n\nCreated by\n - [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu], Rex R. Berendt [rberendt@mcw.edu], Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n - \n\nUsability Domain\n - Rat Xref The O-GlcNAc Database contains rat (taxid:10116) UniProtKB canonical accessions mapped to the The O-GlcNAc Database accessions.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the The O-GlcNAc Database accessions.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Output Subdomain\n Name: rat_protein_xref_oglcnac_db.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_oglcnac_db.csv\n Name: rat_protein_xref_oglcnac_db.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_oglcnac_db.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"592\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"592\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_xref_oglcnac_db.csv" }