{
    "bcoid": "GLY_000692",
    "title": "Glycan PubChem Xref Status",
    "description": "The dataset provides cross-references status to PubChem compound (CID) and substance (SID) for the associated ...",
    "filename": "glycan_pubchem_status.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tags": [
            "PubChem Xref Status"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Rattus",
            "Homo sapiens",
            "Mus musculus",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepatitis C virus (isolate H)",
            "Hepacivirus C"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "no..."
            ],
            [
                "G00009BX...",
                "no..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "pubchem_xref..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "pubchem_xref_exists"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "G00002CF",
                "no",
                "",
                ""
            ],
            [
                "G00009BX",
                "no",
                "",
                ""
            ],
            [
                "G00012MO",
                "no",
                "",
                ""
            ],
            [
                "G00012RZ",
                "no",
                "",
                ""
            ],
            [
                "G00013MO",
                "no",
                "",
                ""
            ],
            [
                "G00014MO",
                "no",
                "",
                ""
            ],
            [
                "G00015MO",
                "no",
                "",
                ""
            ],
            [
                "G00016MO",
                "no",
                "",
                ""
            ],
            [
                "G00017IP",
                "no",
                "",
                ""
            ],
            [
                "G00017MO",
                "no",
                "",
                ""
            ],
            [
                "G00018MO",
                "no",
                "",
                ""
            ],
            [
                "G00019MO",
                "no",
                "",
                ""
            ],
            [
                "G00020MO",
                "no",
                "",
                ""
            ],
            [
                "G00021MO",
                "no",
                "",
                ""
            ],
            [
                "G00022MO",
                "no",
                "",
                ""
            ],
            [
                "G00023MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "91846235|252277270"
            ],
            [
                "G00024MO",
                "yes",
                "glycan_xref_pubchem_substance|glycan_xref_pubchem_compound",
                "252288623|11375554"
            ],
            [
                "G00025AJ",
                "yes",
                "glycan_xref_pubchem_substance|glycan_xref_pubchem_compound",
                "252290930|91857678"
            ],
            [
                "G00025HU",
                "no",
                "",
                ""
            ],
            [
                "G00025MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288428|252293186"
            ],
            [
                "G00025YC",
                "no",
                "",
                ""
            ],
            [
                "G00026MO",
                "no",
                "",
                ""
            ],
            [
                "G00027JG",
                "no",
                "",
                ""
            ],
            [
                "G00027MO",
                "yes",
                "glycan_xref_pubchem_substance|glycan_xref_pubchem_compound",
                "252293273|91859643"
            ],
            [
                "G00028MO",
                "no",
                "",
                ""
            ],
            [
                "G00029MO",
                "no",
                "",
                ""
            ],
            [
                "G00030HB",
                "no",
                "",
                ""
            ],
            [
                "G00030MO",
                "no",
                "",
                ""
            ],
            [
                "G00030SF",
                "no",
                "",
                ""
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ],
            [
                "G00031MO",
                "yes",
                "glycan_xref_pubchem_compound|glycan_xref_pubchem_substance",
                "5288347|252294787"
            ]
        ]
    },
    "readme": "Name\n   - Glycan PubChem Xref Status\n\nVersion\n   - v-2.1.1\n\nCreated on\n  - 2022-09-06T16:07:55.305836\n\nModified on\n   - 2022-09-26T09:08:12.699747\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides cross-references status to PubChem compound (CID) and substance (SID) for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). The dataset allows to know whether a given GlyGen GlyTouCan has PubChem mapping or not.\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - PubChem\n   - Cross-references\n   - ID/Accession Mapping\n\n   Pipeline Steps\n   - Step-1: The script checks all the GlyTouCan accession in masterlist for PubChem mapping. The mapped GlyTouCan accessions to PubChem CID and SID are then extracted in the csv. If the GlyTouCan to PubChem mapping exists then the pubchem_xref_exists is yes\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_masterlist.csv\n      Name: glycan_xref_pubchem.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_xref_pubchem.csv\n   Output Subdomain\n      Name: glycan_pubchem_status.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_pubchem_status.csv\n      Name: glycan_pubchem_status.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_pubchem_status.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"45192\"\n      Name: \"pubchem_xref_exists\"\n     Description: \"\"\n      Unique Values: \"2\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"3\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"9768\"",
    "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/glycan_pubchem_status.csv"
}