{ "bcoid": "GLY_000688", "title": "Fruitfly Reaction Participants (Reactome)", "description": "\"The Fruitfly Protein Reaction Participants (Reactome) dataset contains reactions participants information ...", "filename": "fruitfly_protein_participants_reactome.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tags": [ "Reaction Participants (Reactome)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "R-DME-680980...", "R-ALL-680980..." ], [ "R-DME-680980...", "R-ALL-680980..." ] ], "headers": [ "reaction_id...", "participant_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "reaction_id" }, { "type": "string", "label": "participant_id" }, { "type": "string", "label": "participant_name" }, { "type": "string", "label": "role" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": 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[nucleoplasm]", "output", "P02283", "UniProt" ], [ "R-DME-3318415", "R-DME-4549263", "His2B [nucleoplasm]", "output", "NP_001027385.1", "RefSeq" ] ] }, "readme": "Name\n - Fruitfly Reaction Participants (Reactome)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2022-09-06T11:52:53.037427\n\nModified on\n - 2022-09-26T09:08:12.689154\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - \"The Fruitfly Protein Reaction Participants (Reactome) dataset contains reactions participants information for pathways for fruitfly [taxid:7227] UniProtKB accessions that includes reaction IDs, participant ID, participant name, role, xref ID etc from Reactome database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, Reactome and GlyGen\"\n\nDescription Domain\n Keywords\n - Reactome\n - Participant\n\n Pipeline Steps\n - Step-1: The script loads the Reactome participant data from the triplestore containing triples from nt file to retrieve the information extracts the dataset in the csv format.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: database_accession.tsv\n URI: /data/shared/glyds/downloads/chebi/2023_05_19/database_accession.tsv\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_participants_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_participants_reactome.csv\n Name: fruitfly_protein_participants_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_participants_reactome.stat.csv\n\nFields\n Name: \"reaction_id\"\n Description: \"The identifier assigned to a reaction in Reactome database\"\n Unique Values: \"3455\"\n Name: \"participant_id\"\n Description: \"\"\n Unique Values: \"3651\"\n Name: \"participant_name\"\n Description: \"\"\n Unique Values: \"2083\"\n Name: \"role\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"5615\"\n Name: \"xref_type\"\n Description: \"\"\n Unique Values: \"29\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_participants_reactome.csv" }