{
    "bcoid": "GLY_000679",
    "title": "Fruitfly Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "",
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                "Journal of proteome research",
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                "Journal of proteome research",
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                "Journal of proteome research",
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                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Journal of proteome research",
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                "Journal of proteome research",
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                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Journal of proteome research",
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                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Journal of proteome research",
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                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
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                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
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                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.",
                "Molecular bioSystems",
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                "Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Junger MA, Eng JK, Aebersold R, Tao WA",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
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            [
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
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                "An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.",
                "Molecular bioSystems",
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                "Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Junger MA, Eng JK, Aebersold R, Tao WA",
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            [
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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            [
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
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                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9VQI9"
            ],
            [
                "P52304-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "P52304"
            ],
            [
                "P02844-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "P02844"
            ],
            [
                "P20480-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "P20480"
            ],
            [
                "Q9VR99-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9VR99"
            ],
            [
                "Q24314-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q24314"
            ],
            [
                "Q9VLD6-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9VLD6"
            ],
            [
                "Q9W1R5-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9W1R5"
            ],
            [
                "Q4Z8K6-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q4Z8K6"
            ],
            [
                "P12297-2",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "P12297"
            ],
            [
                "Q03751-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q03751"
            ],
            [
                "P07247-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "P07247"
            ],
            [
                "Q9VMD6-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9VMD6"
            ],
            [
                "Q9VRP5-3",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9VRP5"
            ],
            [
                "Q9VHP0-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9VHP0"
            ],
            [
                "P92177-3",
                "An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.",
                "Molecular bioSystems",
                "2007 Apr",
                "Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Junger MA, Eng JK, Aebersold R, Tao WA",
                "protein_xref_pubmed",
                "17372656",
                "protein_xref_uniprotkb",
                "P92177"
            ],
            [
                "Q9VVY3-1",
                "An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.",
                "Molecular bioSystems",
                "2007 Apr",
                "Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Junger MA, Eng JK, Aebersold R, Tao WA",
                "protein_xref_pubmed",
                "17372656",
                "protein_xref_uniprotkb",
                "Q9VVY3"
            ],
            [
                "Q9XTN2-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9XTN2"
            ],
            [
                "A1A708-1",
                "An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.",
                "Molecular bioSystems",
                "2007 Apr",
                "Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Junger MA, Eng JK, Aebersold R, Tao WA",
                "protein_xref_pubmed",
                "17372656",
                "protein_xref_uniprotkb",
                "A1A708"
            ],
            [
                "A1Z7G7-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "A1Z7G7"
            ],
            [
                "Q9W0P8-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9W0P8"
            ],
            [
                "Q9V877-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9V877"
            ],
            [
                "Q7YZA2-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q7YZA2"
            ],
            [
                "P04197-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "P04197"
            ],
            [
                "Q9Y0I1-1",
                "Phosphoproteome analysis of Drosophila melanogaster embryos.",
                "Journal of proteome research",
                "2008 Apr",
                "Zhai B, Villen J, Beausoleil SA, Mintseris J, Gygi SP",
                "protein_xref_pubmed",
                "18327897",
                "protein_xref_uniprotkb",
                "Q9Y0I1"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.1.1\n\nCreated on\n  - 2022-09-02T13:32:35.505543\n\nModified on\n   - 2023-03-14T17:12:29.696Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: fruitfly_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: fruitfly_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"732\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"43\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"24\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"43\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"43\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"43\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"732\"",
    "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}