{ "bcoid": "GLY_000673", "title": "Fruitfly UniProtKB Xref O-GlcNAc (MCW)", "description": "The Fruitfly UniProtKB Xref O-GlcNAc (MCW) contains fruitfly [taxid:7227] UniProtKB canonical accessions ...", "filename": "fruitfly_protein_xref_oglcnac_db.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tags": [ "O-GlcNAc (MCW) cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P08841-1...", "protein_xref..." ], [ "M9PB30-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P08841-1", "protein_xref_oglcnac_db", "P08841", "O-GlcNAc MCW" ], [ "M9PB30-1", "protein_xref_oglcnac_db", "M9PB30", "O-GlcNAc MCW" ], [ "P17336-1", "protein_xref_oglcnac_db", "P17336", "O-GlcNAc MCW" ], [ "P11997-1", "protein_xref_oglcnac_db", "P11997", "O-GlcNAc MCW" ], [ "Q9NB04-1", "protein_xref_oglcnac_db", "Q9NB04", "O-GlcNAc MCW" ], [ "Q9VWN5-1", "protein_xref_oglcnac_db", "Q9VWN5", "O-GlcNAc MCW" ], [ "A0A0B4K6G3-1", "protein_xref_oglcnac_db", "A0A0B4K6G3", "O-GlcNAc MCW" ], [ "Q9V6L0-1", "protein_xref_oglcnac_db", "Q9V6L0", "O-GlcNAc MCW" ], [ "X2JAR4-1", "protein_xref_oglcnac_db", "X2JAR4", "O-GlcNAc MCW" ], [ "Q9W3L4-1", "protein_xref_oglcnac_db", "Q9W3L4", "O-GlcNAc MCW" ], [ "Q9VBK1-1", "protein_xref_oglcnac_db", "Q9VBK1", "O-GlcNAc MCW" ], [ "M9PF00-1", "protein_xref_oglcnac_db", "M9PF00", "O-GlcNAc MCW" ], [ "Q9W451-1", "protein_xref_oglcnac_db", "Q9W451", "O-GlcNAc MCW" ], [ "P08111-1", "protein_xref_oglcnac_db", "P08111", "O-GlcNAc MCW" ], [ "Q9W1X4-1", "protein_xref_oglcnac_db", "Q9W1X4", "O-GlcNAc MCW" ], [ "Q8SWR8-1", "protein_xref_oglcnac_db", "Q8SWR8", "O-GlcNAc MCW" ], [ "Q9W0T1-1", "protein_xref_oglcnac_db", "Q9W0T1", "O-GlcNAc MCW" ], [ "Q9VHC8-1", "protein_xref_oglcnac_db", "Q9VHC8", "O-GlcNAc MCW" ], [ "Q9VHC3-1", "protein_xref_oglcnac_db", "Q9VHC3", "O-GlcNAc MCW" ], [ "M9MS77-1", "protein_xref_oglcnac_db", "M9MS77", "O-GlcNAc MCW" ], [ "Q8ST83-1", "protein_xref_oglcnac_db", "Q8ST83", "O-GlcNAc MCW" ], [ "M9PHT1-1", "protein_xref_oglcnac_db", "M9PHT1", "O-GlcNAc MCW" ], [ "P33438-1", "protein_xref_oglcnac_db", "P33438", "O-GlcNAc MCW" ], [ "O61735-1", "protein_xref_oglcnac_db", "O61735", "O-GlcNAc MCW" ], [ "P18053-1", "protein_xref_oglcnac_db", "P18053", "O-GlcNAc MCW" ], [ "Q9Y125-1", "protein_xref_oglcnac_db", "Q9Y125", "O-GlcNAc MCW" ], [ "Q9VCD1-1", "protein_xref_oglcnac_db", "Q9VCD1", "O-GlcNAc MCW" ], [ "P13709-1", "protein_xref_oglcnac_db", "P13709", "O-GlcNAc MCW" ], [ "P04412-1", "protein_xref_oglcnac_db", "P04412", "O-GlcNAc MCW" ], [ "A1Z7Y7-1", "protein_xref_oglcnac_db", "A1Z7Y7", "O-GlcNAc MCW" ], [ "P98081-1", "protein_xref_oglcnac_db", "P98081", "O-GlcNAc MCW" ], [ "P20432-1", "protein_xref_oglcnac_db", "P20432", "O-GlcNAc MCW" ], [ "P29613-2", "protein_xref_oglcnac_db", "P29613", "O-GlcNAc MCW" ], [ "P47938-1", "protein_xref_oglcnac_db", "P47938", "O-GlcNAc MCW" ], [ "Q9W3Q5-1", "protein_xref_oglcnac_db", "Q9W3Q5", "O-GlcNAc MCW" ], [ "M9MSL3-1", "protein_xref_oglcnac_db", "M9MSL3", "O-GlcNAc MCW" ], [ "Q9W4Y3-1", "protein_xref_oglcnac_db", "Q9W4Y3", "O-GlcNAc MCW" ], [ "Q9W2N6-1", "protein_xref_oglcnac_db", "Q9W2N6", "O-GlcNAc MCW" ], [ "M9PBN2-1", "protein_xref_oglcnac_db", "M9PBN2", "O-GlcNAc MCW" ], [ "A1Z9J3-1", "protein_xref_oglcnac_db", "A1Z9J3", "O-GlcNAc MCW" ], [ "Q8IMS8-1", "protein_xref_oglcnac_db", "Q8IMS8", "O-GlcNAc MCW" ], [ "P61851-1", "protein_xref_oglcnac_db", "P61851", "O-GlcNAc MCW" ], [ "Q9VCS4-1", "protein_xref_oglcnac_db", "Q9VCS4", "O-GlcNAc MCW" ], [ "Q9V8R9-1", "protein_xref_oglcnac_db", "Q9V8R9", "O-GlcNAc MCW" ], [ "Q9VU68-1", "protein_xref_oglcnac_db", "Q9VU68", "O-GlcNAc MCW" ], [ "Q6NR09-1", "protein_xref_oglcnac_db", "Q6NR09", "O-GlcNAc MCW" ], [ "A0A6H2EG35-1", "protein_xref_oglcnac_db", "A0A6H2EG35", "O-GlcNAc MCW" ], [ "P15425-1", "protein_xref_oglcnac_db", "P15425", "O-GlcNAc MCW" ], [ "Q9V3U6-1", "protein_xref_oglcnac_db", "Q9V3U6", "O-GlcNAc MCW" ], [ "Q9VHX4-1", "protein_xref_oglcnac_db", "Q9VHX4", "O-GlcNAc MCW" ], [ "O62619-1", "protein_xref_oglcnac_db", "O62619", "O-GlcNAc MCW" ], [ "Q9VW34-1", "protein_xref_oglcnac_db", "Q9VW34", "O-GlcNAc MCW" ], [ "Q9VLF4-1", "protein_xref_oglcnac_db", "Q9VLF4", "O-GlcNAc MCW" ], [ "P22465-1", "protein_xref_oglcnac_db", "P22465", "O-GlcNAc MCW" ], [ "Q9VVI9-1", "protein_xref_oglcnac_db", "Q9VVI9", "O-GlcNAc MCW" ], [ "Q86S05-1", "protein_xref_oglcnac_db", "Q86S05", "O-GlcNAc MCW" ], [ "Q8MLT4-1", "protein_xref_oglcnac_db", "Q8MLT4", "O-GlcNAc MCW" ], [ "Q7JR71-1", "protein_xref_oglcnac_db", "Q7JR71", "O-GlcNAc MCW" ], [ "Q76NR6-1", "protein_xref_oglcnac_db", "Q76NR6", "O-GlcNAc MCW" ], [ "M9PF56-1", "protein_xref_oglcnac_db", "M9PF56", "O-GlcNAc MCW" ], [ "Q9V4B8-1", "protein_xref_oglcnac_db", "Q9V4B8", "O-GlcNAc MCW" ], [ "Q961C5-1", "protein_xref_oglcnac_db", "Q961C5", "O-GlcNAc MCW" ], [ "Q9VIF2-1", "protein_xref_oglcnac_db", "Q9VIF2", "O-GlcNAc MCW" ], [ "Q9VQ58-1", "protein_xref_oglcnac_db", "Q9VQ58", "O-GlcNAc MCW" ], [ "Q9VZI1-1", "protein_xref_oglcnac_db", "Q9VZI1", "O-GlcNAc MCW" ], [ "P07207-1", "protein_xref_oglcnac_db", "P07207", "O-GlcNAc MCW" ], [ "Q8T3W8-1", "protein_xref_oglcnac_db", "Q8T3W8", "O-GlcNAc MCW" ], [ "A0A0B4K7V4-1", "protein_xref_oglcnac_db", "A0A0B4K7V4", "O-GlcNAc MCW" ], [ "Q7JQR3-1", "protein_xref_oglcnac_db", "Q7JQR3", "O-GlcNAc MCW" ], [ "Q9W329-1", "protein_xref_oglcnac_db", "Q9W329", "O-GlcNAc MCW" ], [ "P04052-1", "protein_xref_oglcnac_db", "P04052", "O-GlcNAc MCW" ], [ "Q9W2U7-1", "protein_xref_oglcnac_db", "Q9W2U7", "O-GlcNAc MCW" ], [ "Q9XZJ4-1", "protein_xref_oglcnac_db", "Q9XZJ4", "O-GlcNAc MCW" ], [ "Q9BJZ5-1", "protein_xref_oglcnac_db", "Q9BJZ5", "O-GlcNAc MCW" ], [ "Q9VGL0-1", "protein_xref_oglcnac_db", "Q9VGL0", "O-GlcNAc MCW" ], [ "Q9W3V9-1", "protein_xref_oglcnac_db", "Q9W3V9", "O-GlcNAc MCW" ], [ "Q7JZB4-1", "protein_xref_oglcnac_db", "Q7JZB4", "O-GlcNAc MCW" ], [ "Q7PLI2-1", "protein_xref_oglcnac_db", "Q7PLI2", "O-GlcNAc MCW" ], [ "Q9W4T4-1", "protein_xref_oglcnac_db", "Q9W4T4", "O-GlcNAc MCW" ], [ "Q7KRY7-1", "protein_xref_oglcnac_db", "Q7KRY7", "O-GlcNAc MCW" ], [ "Q8MRI4-1", "protein_xref_oglcnac_db", "Q8MRI4", "O-GlcNAc MCW" ], [ "Q9Y0Z1-1", "protein_xref_oglcnac_db", "Q9Y0Z1", "O-GlcNAc MCW" ], [ "Q7KMM4-1", "protein_xref_oglcnac_db", "Q7KMM4", "O-GlcNAc MCW" ], [ "P47825-1", "protein_xref_oglcnac_db", "P47825", "O-GlcNAc MCW" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref O-GlcNAc (MCW)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2022-08-31T13:46:26.989814\n\nModified on\n - 2022-09-26T09:08:12.591263\n\nCreated by\n - [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu], Rex R. Berendt [rberendt@mcw.edu], Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref O-GlcNAc (MCW) contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to O-GlcNAc (MCW) database accessions/identifiers. If you use this dataset please provide proper attribution to O-GlcNAc (MCW) and GlyGen. O - GlcNAc(MCW) is a database for O - GlcNAc glycosylation information. https://www.oglcnac.mcw.edu/\n\nDescription Domain\n Keywords\n - Drosophila\n - O-GlcNAc (MCW)\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to O-GlcNAc database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Output Subdomain\n Name: fruitfly_protein_xref_oglcnac_db.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_oglcnac_db.csv\n Name: fruitfly_protein_xref_oglcnac_db.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_oglcnac_db.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"284\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"284\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_oglcnac_db.csv" }