{ "bcoid": "GLY_000671", "title": "Fruitfly UniProtKB Xref PRO", "description": "The Fruitfly UniprotKB Xref PRO contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...", "filename": "fruitfly_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tags": [ "Pro cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P40796-1...", "protein_xref..." ], [ "P40797-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P40796-1", "protein_xref_pro", "PR_P40796", "" ], [ "P40797-1", "protein_xref_pro", "PR_P40797", "" ], [ "P40794-1", "protein_xref_pro", "PR_P40794", "" ], [ "P40795-1", "protein_xref_pro", "PR_P40795", "" ], [ "P40792-1", "protein_xref_pro", "PR_P40792", "" ], [ "P40793-1", "protein_xref_pro", "PR_P40793", "" ], [ "P40791-1", "protein_xref_pro", "PR_P40791", "" ], [ "P40798-1", "protein_xref_pro", "PR_P40798", "" ], [ "P40421-1", "protein_xref_pro", "PR_P40421", "" ], [ "P40423-1", "protein_xref_pro", "PR_P40423", "" ], [ "P40427-1", "protein_xref_pro", "PR_P40427", "" ], [ "P08841-1", "protein_xref_pro", "PR_P08841", "" ], [ "Q9VE87-1", "protein_xref_pro", "PR_Q9VE87", "" ], [ "Q9VE86-1", "protein_xref_pro", "PR_Q9VE86", "" ], [ "P05389-1", "protein_xref_pro", "PR_P05389", "" ], [ "P04388-1", "protein_xref_pro", "PR_P04388", "" ], [ "A1ZB42-1", "protein_xref_pro", "PR_A1ZB42", "" ], [ "Q02870-1", "protein_xref_pro", "PR_Q02870", "" ], [ "P17336-1", "protein_xref_pro", "PR_P17336", "" ], [ "Q7KN74-1", "protein_xref_pro", "PR_Q7KN74", "" ], [ "Q9VWS4-1", "protein_xref_pro", "PR_Q9VWS4", "" ], [ "Q9VWS2-1", "protein_xref_pro", "PR_Q9VWS2", "" ], [ "P48554-1", "protein_xref_pro", "PR_P48554", "" ], [ "P48555-1", "protein_xref_pro", "PR_P48555", "" ], [ "Q9VUR3-1", "protein_xref_pro", "PR_Q9VUR3", "" ], [ "Q9V969-1", "protein_xref_pro", "PR_Q9V969", "" ], [ "Q9V968-1", "protein_xref_pro", "PR_Q9V968", "" ], [ "P21663-1", "protein_xref_pro", "PR_P21663", "" ], [ "P11996-1", "protein_xref_pro", "PR_P11996", "" ], [ "P11997-1", "protein_xref_pro", "PR_P11997", "" ], [ "P11995-1", "protein_xref_pro", "PR_P11995", "" ], [ "P03896-1", "protein_xref_pro", "PR_P03896", "" ], [ "A1ZAI5-1", "protein_xref_pro", "PR_A1ZAI5", "" ], [ "A1ZAI3-1", "protein_xref_pro", "PR_A1ZAI3", "" ], [ "Q9VH70-1", "protein_xref_pro", "PR_Q9VH70", "" ], [ "Q01583-4", "protein_xref_pro", "PR_Q01583", "" ], [ "Q8IMP6-1", "protein_xref_pro", "PR_Q8IMP6", "" ], [ "Q9NB04-1", "protein_xref_pro", "PR_Q9NB04", "" ], [ "A1Z9R4-1", "protein_xref_pro", "PR_A1Z9R4", "" ], [ "Q9VTC2-1", "protein_xref_pro", "PR_Q9VTC2", "" ], [ "Q9VKQ9-1", "protein_xref_pro", "PR_Q9VKQ9", "" ], [ "P55035-1", "protein_xref_pro", "PR_P55035", "" ], [ "Q7JQ32-1", "protein_xref_pro", "PR_Q7JQ32", "" ], [ "A1ZBY1-1", "protein_xref_pro", "PR_A1ZBY1", "" ], [ "A0A0B4K753-1", "protein_xref_pro", "PR_A0A0B4K753", "" ], [ "Q9VE04-1", "protein_xref_pro", "PR_Q9VE04", "" ], [ "Q9W1G0-1", "protein_xref_pro", "PR_Q9W1G0", "" ], [ "Q9VE09-1", "protein_xref_pro", "PR_Q9VE09", "" ], [ "P06602-1", "protein_xref_pro", "PR_P06602", "" ], [ "P06603-1", "protein_xref_pro", "PR_P06603", "" ], [ "P06601-1", "protein_xref_pro", "PR_P06601", "" ], [ "P06606-1", "protein_xref_pro", "PR_P06606", "" ], [ "P06607-1", "protein_xref_pro", "PR_P06607", "" ], [ "P06604-1", "protein_xref_pro", "PR_P06604", "" ], [ "P06605-1", "protein_xref_pro", "PR_P06605", "" ], [ "Q9VWN9-1", "protein_xref_pro", "PR_Q9VWN9", "" ], [ "Q9VWN5-1", "protein_xref_pro", "PR_Q9VWN5", "" ], [ "P18475-1", "protein_xref_pro", "PR_P18475", "" ], [ "P25823-1", "protein_xref_pro", "PR_P25823", "" ], [ "P25822-1", "protein_xref_pro", "PR_P25822", "" ], [ "Q9GYU7-1", "protein_xref_pro", "PR_Q9GYU7", "" ], [ "P00522-1", "protein_xref_pro", "PR_P00522", "" ], [ "P00528-1", "protein_xref_pro", "PR_P00528", "" ], [ "P08736-1", "protein_xref_pro", "PR_P08736", "" ], [ "Q9V9Y9-1", "protein_xref_pro", "PR_Q9V9Y9", "" ], [ "Q9VNL4-1", "protein_xref_pro", "PR_Q9VNL4", "" ], [ "Q9VNL3-1", "protein_xref_pro", "PR_Q9VNL3", "" ], [ "Q8SZ63-1", "protein_xref_pro", "PR_Q8SZ63", "" ], [ "Q9VD28-1", "protein_xref_pro", "PR_Q9VD28", "" ], [ "Q9VU31-1", "protein_xref_pro", "PR_Q9VU31", "" ], [ "Q9VU34-1", "protein_xref_pro", "PR_Q9VU34", "" ], [ "Q9VU35-1", "protein_xref_pro", "PR_Q9VU35", "" ], [ "Q5LJP9-1", "protein_xref_pro", "PR_Q5LJP9", "" ], [ "P41092-1", "protein_xref_pro", "PR_P41092", "" ], [ "P41093-1", "protein_xref_pro", "PR_P41093", "" ], [ "P41094-1", "protein_xref_pro", "PR_P41094", "" ], [ "P40320-1", "protein_xref_pro", "PR_P40320", "" ], [ "Q8IS44-1", "protein_xref_pro", "PR_Q8IS44", "" ], [ "Q95TY2-1", "protein_xref_pro", "PR_Q95TY2", "" ], [ "P83097-1", "protein_xref_pro", "PR_P83097", "" ], [ "Q9VF28-1", "protein_xref_pro", "PR_Q9VF28", "" ], [ "Q9VF26-1", "protein_xref_pro", "PR_Q9VF26", "" ], [ "Q9VF27-1", "protein_xref_pro", "PR_Q9VF27", "" ], [ "Q9VF25-1", "protein_xref_pro", "PR_Q9VF25", "" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref PRO\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2022-08-31T13:44:37.770122\n\nModified on\n - 2022-09-26T09:08:12.692039\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniprotKB Xref PRO contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. \n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_pro.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_pro.csv\n Name: fruitfly_protein_xref_pro.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_pro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"3897\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"3897\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_pro.csv" }