{ "bcoid": "GLY_000670", "title": "Fruitfly UniProtKB Xref Pfam", "description": "The Fruitfly UniProtKB Xref Pfam contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...", "filename": "fruitfly_protein_xref_pfam.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tags": [ "Pfam cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "M9PJ12-1...", "protein_xref..." ], [ "P34082-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "M9PJ12-1", "protein_xref_pfam", "PF01530", "zf-C2HC" ], [ "P34082-1", "protein_xref_pfam", "PF07679", "I-set" ], [ "P34082-1", "protein_xref_pfam", "PF00041", "fn3" ], [ "P34082-1", "protein_xref_pfam", "PF13927", "Ig_3" ], [ "P40796-1", "protein_xref_pfam", "PF08777", "RRM_3" ], [ "P40796-1", "protein_xref_pfam", "PF05383", "La" ], [ "P40797-1", "protein_xref_pfam", "PF00735", "Septin" ], [ "P40795-1", "protein_xref_pfam", "PF15888", "FOG_N" ], [ "P40792-1", "protein_xref_pfam", "PF00071", "Ras" ], [ "P40793-1", "protein_xref_pfam", "PF00071", "Ras" ], [ "P40791-1", "protein_xref_pfam", "PF00319", "SRF-TF" ], [ "P40791-1", "protein_xref_pfam", "PF12347", "HJURP_C" ], [ "P40798-1", "protein_xref_pfam", "PF01424", "R3H" ], [ "P40798-1", "protein_xref_pfam", "PF01422", "zf-NF-X1" ], [ "P40421-1", "protein_xref_pfam", "PF00149", "Metallophos" ], [ "P40421-1", "protein_xref_pfam", "PF13833", "EF-hand_8" ], [ "P40423-1", "protein_xref_pfam", "PF13405", "EF-hand_6" ], [ "P40427-1", "protein_xref_pfam", "PF00046", "Homeodomain" ], [ "P40427-1", "protein_xref_pfam", "PF03792", "PBC" ], [ "A2VEV2-1", "protein_xref_pfam", "PF00498", "FHA" ], [ "P08841-1", "protein_xref_pfam", "PF03953", "Tubulin_C" ], [ "P08841-1", "protein_xref_pfam", "PF00091", "Tubulin" ], [ "Q9VE87-1", "protein_xref_pfam", "PF13879", "Hmw_CFAP97" ], [ "Q9VE86-1", "protein_xref_pfam", "PF01612", "DNA_pol_A_exo1" ], [ "P05389-1", "protein_xref_pfam", "PF00428", "Ribosomal_60s" ], [ "Q9VK71-1", "protein_xref_pfam", "PF00046", "Homeodomain" ], [ "Q9VK71-1", "protein_xref_pfam", "PF00157", "Pou" ], [ "Q9V776-1", "protein_xref_pfam", "PF00067", "p450" ], [ "Q9VRR2-1", "protein_xref_pfam", "PF03105", "SPX" ], [ "Q9VRR2-1", "protein_xref_pfam", "PF03124", "EXS" ], [ "Q9VRR3-1", "protein_xref_pfam", "PF00650", "CRAL_TRIO" ], [ "Q9VRR0-1", "protein_xref_pfam", "PF00083", "Sugar_tr" ], [ "M9PEG2-1", "protein_xref_pfam", "PF15860", "DUF4728" ], [ "M9PBR6-1", "protein_xref_pfam", "PF00635", "Motile_Sperm" ], [ "M9PEA4-1", "protein_xref_pfam", "PF00017", "SH2" ], [ "P04388-1", "protein_xref_pfam", "PF00071", "Ras" ], [ "A1ZB47-1", "protein_xref_pfam", "PF00211", "Guanylate_cyc" ], [ "A1ZB47-1", "protein_xref_pfam", "PF07701", "HNOBA" ], [ "A1ZB47-1", "protein_xref_pfam", "PF08376", "NIT" ], [ "A1ZB42-1", "protein_xref_pfam", "PF07544", "Med9" ], [ "A1ZB48-1", "protein_xref_pfam", "PF00059", "Lectin_C" ], [ "Q9VYT1-1", "protein_xref_pfam", "PF10158", "LOH1CR12" ], [ "Q9VLI9-1", "protein_xref_pfam", "PF04099", "Sybindin" ], [ "Q9VLI1-1", "protein_xref_pfam", "PF01074", "Glyco_hydro_38N" ], [ "Q9VLI1-1", "protein_xref_pfam", "PF07748", "Glyco_hydro_38C" ], [ "Q9VLI1-1", "protein_xref_pfam", "PF09261", "Alpha-mann_mid" ], [ "Q9VLI1-1", "protein_xref_pfam", "PF17677", "Glyco_hydro38C2" ], [ "Q9VLI0-1", "protein_xref_pfam", "PF01074", "Glyco_hydro_38N" ], [ "Q9VLI0-1", "protein_xref_pfam", "PF07748", "Glyco_hydro_38C" ], [ "Q9VLI0-1", "protein_xref_pfam", "PF09261", "Alpha-mann_mid" ], [ "Q9VLI0-1", "protein_xref_pfam", "PF17677", "Glyco_hydro38C2" ], [ "Q9VLI2-1", "protein_xref_pfam", "PF01074", "Glyco_hydro_38N" ], [ "Q9VLI2-1", "protein_xref_pfam", "PF07748", "Glyco_hydro_38C" ], [ "Q9VLI2-1", "protein_xref_pfam", "PF09261", "Alpha-mann_mid" ], [ "Q9VLI2-1", "protein_xref_pfam", "PF17677", "Glyco_hydro38C2" ], [ "Q9VLI4-1", "protein_xref_pfam", "PF15891", "Nuc_deoxyri_tr2" ], [ "Q9VLI4-1", "protein_xref_pfam", "PF15891", "Nuc_deoxyri_tr2" ], [ "Q9VLI6-1", "protein_xref_pfam", "PF00199", "Catalase" ], [ "Q9VLI6-1", "protein_xref_pfam", "PF06628", "Catalase-rel" ], [ "Q95RA8-1", "protein_xref_pfam", "PF03637", "Mob1_phocein" ], [ "Q27869-1", "protein_xref_pfam", "PF01135", "PCMT" ], [ "E1JJ52-1", "protein_xref_pfam", "PF00566", "RabGAP-TBC" ], [ "E1JJ52-1", "protein_xref_pfam", "PF11830", "DUF3350" ], [ "A0A0B4KHI4-1", "protein_xref_pfam", "PF00076", "RRM_1" ], [ "A0A0B4KHI4-1", "protein_xref_pfam", "PF18360", "hnRNP_Q_AcD" ], [ "A0A0B4KG03-1", "protein_xref_pfam", "PF13855", "LRR_8" ], [ "A0A0B4KHI4-1", "protein_xref_pfam", "PF00076", "RRM_1" ], [ "A0A0B4KHI4-1", "protein_xref_pfam", "PF18360", "hnRNP_Q_AcD" ], [ "Q02870-1", "protein_xref_pfam", "PF13625", "Helicase_C_3" ], [ "Q02870-1", "protein_xref_pfam", "PF16203", "ERCC3_RAD25_C" ], [ "Q02870-1", "protein_xref_pfam", "PF04851", "ResIII" ], [ "E1JH39-1", "protein_xref_pfam", "PF12738", "PTCB-BRCT" ], [ "Q7JUM3-1", "protein_xref_pfam", "PF00534", "Glycos_transf_1" ], [ "Q7JUM3-1", "protein_xref_pfam", "PF08288", "PIGA" ], [ "Q8SXV2-1", "protein_xref_pfam", "PF17064", "QVR" ], [ "M9PB30-1", "protein_xref_pfam", "PF07645", "EGF_CA" ], [ "M9PB30-1", "protein_xref_pfam", "PF12947", "EGF_3" ], [ "M9PB30-1", "protein_xref_pfam", "PF07645", "EGF_CA" ], [ "M9PB30-1", "protein_xref_pfam", "PF12947", "EGF_3" ], [ "M9PB30-1", "protein_xref_pfam", "PF07645", "EGF_CA" ], [ "M9PB30-1", "protein_xref_pfam", "PF12947", "EGF_3" ], [ "M9PEM2-1", "protein_xref_pfam", "PF12624", "Chorein_N" ], [ "Q95R34-1", "protein_xref_pfam", "PF00650", "CRAL_TRIO" ], [ "Q95R35-1", "protein_xref_pfam", "PF00883", "Peptidase_M17" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref Pfam\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2022-08-31T13:42:50.669379\n\nModified on\n - 2022-09-26T09:08:12.679882\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref Pfam contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to Pfam database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - Pfam is a database of protein families that includes their annotations and multiple sequence alignments generated using hidden Markov models. \n\nDescription Domain\n Keywords\n - protein family\n - Pfam\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Pfam database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_pfam.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_pfam.csv\n Name: fruitfly_protein_xref_pfam.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_pfam.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"10723\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"4633\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"4633\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_pfam.csv" }