{ "bcoid": "GLY_000667", "title": "Fruitfly UniProtKB Xref OrthoDB", "description": "The Fruitfly UniProtKB Xref OrthoDB contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced ...", "filename": "fruitfly_protein_xref_orthodb.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tags": [ "Orthodb cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "M9PJ12-1...", "protein_xref..." ], [ "P34082-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "M9PJ12-1", "protein_xref_orthodb", "3091993at2759", "" ], [ "P34082-1", "protein_xref_orthodb", "5233206at2759", "" ], [ "P40796-1", "protein_xref_orthodb", "5477115at2759", "" ], [ "P40797-1", "protein_xref_orthodb", "5396944at2759", "" ], [ "P40794-1", "protein_xref_orthodb", "3563407at2759", "" ], [ "P40795-1", "protein_xref_orthodb", "3475639at2759", "" ], [ "P40792-1", "protein_xref_orthodb", "20499at2759", "" ], [ "P40793-1", "protein_xref_orthodb", "20499at2759", "" ], [ "P40798-1", "protein_xref_orthodb", "1412at2759", "" ], [ "P40421-1", "protein_xref_orthodb", "3076469at2759", "" ], [ "P40423-1", "protein_xref_orthodb", "312751at2759", "" ], [ "P40427-1", "protein_xref_orthodb", "3684468at2759", "" ], [ "A8JRH2-1", "protein_xref_orthodb", "3553355at2759", "" ], [ "A2VEV2-1", "protein_xref_orthodb", "3570790at2759", "" ], [ "A2VEV0-1", "protein_xref_orthodb", "3538225at2759", "" ], [ "P08841-1", "protein_xref_orthodb", "3124041at2759", "" ], [ "Q9VE87-1", "protein_xref_orthodb", "3605830at2759", "" ], [ "Q9VE86-1", "protein_xref_orthodb", "3662955at2759", "" ], [ "Q9VE85-1", "protein_xref_orthodb", "119005at2759", "" ], [ "P05389-1", "protein_xref_orthodb", "5485067at2759", "" ], [ "A0A6H2EE55-1", "protein_xref_orthodb", "3033322at2759", "" ], [ "Q9VK71-1", "protein_xref_orthodb", "4250502at2759", "" ], [ "Q9V776-1", "protein_xref_orthodb", "1611592at2759", "" ], [ "Q9VRR2-1", "protein_xref_orthodb", "7162at2759", "" ], [ "Q9VRR3-1", "protein_xref_orthodb", "5480493at2759", "" ], [ "Q9VRR0-1", "protein_xref_orthodb", "5348325at2759", "" ], [ "M9PEG2-1", "protein_xref_orthodb", "2945857at2759", "" ], [ "M9PBR6-1", "protein_xref_orthodb", "5480493at2759", "" ], [ "Q8SX44-1", "protein_xref_orthodb", "51407at2759", "" ], [ "M9PEA4-1", "protein_xref_orthodb", "3681543at2759", "" ], [ "P04388-1", "protein_xref_orthodb", "8685at2759", "" ], [ "A1ZB47-1", "protein_xref_orthodb", "1356373at2759", "" ], [ "A1ZB42-1", "protein_xref_orthodb", "3035630at2759", "" ], [ "A1ZB48-1", "protein_xref_orthodb", "3509375at2759", "" ], [ "A1ZB49-1", "protein_xref_orthodb", "3584354at2759", "" ], [ "Q9VYT1-1", "protein_xref_orthodb", "2899519at2759", "" ], [ "Q9VLI9-1", "protein_xref_orthodb", "275602at2759", "" ], [ "Q9VLI1-1", "protein_xref_orthodb", "5474711at2759", "" ], [ "Q9VLI0-1", "protein_xref_orthodb", "5474711at2759", "" ], [ "Q9VLI3-1", "protein_xref_orthodb", "3565774at2759", "" ], [ "Q9VLI2-1", "protein_xref_orthodb", "5474711at2759", "" ], [ "Q9VLI4-1", "protein_xref_orthodb", "72325at2759", "" ], [ "Q9VLI4-1", "protein_xref_orthodb", "72325at2759", "" ], [ "Q9VLI6-1", "protein_xref_orthodb", "3198922at2759", "" ], [ "Q95RA8-1", "protein_xref_orthodb", "5471991at2759", "" ], [ "Q27869-1", "protein_xref_orthodb", "303909at2759", "" ], [ "E1JJ52-1", "protein_xref_orthodb", "2908929at2759", "" ], [ "A0A0B4KHI4-1", "protein_xref_orthodb", "3184171at2759", "" ], [ "A0A0B4KG03-1", "protein_xref_orthodb", "5473708at2759", "" ], [ "A0A0B4KHI4-1", "protein_xref_orthodb", "3184171at2759", "" ], [ "Q02870-1", "protein_xref_orthodb", "1360679at2759", "" ], [ "E1JH39-1", "protein_xref_orthodb", "76720at2759", "" ], [ "Q7JUM3-1", "protein_xref_orthodb", "24420at2759", "" ], [ "Q8SXV2-1", "protein_xref_orthodb", "3378720at2759", "" ], [ "M9PB30-1", "protein_xref_orthodb", "5391644at2759", "" ], [ "M9PB30-1", "protein_xref_orthodb", "5391644at2759", "" ], [ "M9PB30-1", "protein_xref_orthodb", "5391644at2759", "" ], [ "M9PEM2-1", "protein_xref_orthodb", "10867at2759", "" ], [ "Q95R34-1", "protein_xref_orthodb", "5404239at2759", "" ], [ "Q95R35-1", "protein_xref_orthodb", "5406502at2759", "" ], [ "Q9VME8-1", "protein_xref_orthodb", "3683954at2759", "" ], [ "Q9VME9-1", "protein_xref_orthodb", "3683954at2759", "" ], [ "Q9VME0-1", "protein_xref_orthodb", "3081071at2759", "" ], [ "Q9VME1-1", "protein_xref_orthodb", "3601426at2759", "" ], [ "Q9VME2-1", "protein_xref_orthodb", "3485627at2759", "" ], [ "Q9VME3-1", "protein_xref_orthodb", "3607481at2759", "" ], [ "Q9VVS1-1", "protein_xref_orthodb", "2086232at2759", "" ], [ "Q9VME5-1", "protein_xref_orthodb", "3605196at2759", "" ], [ "Q9VVS3-1", "protein_xref_orthodb", "3591915at2759", "" ], [ "Q9VVS2-1", "protein_xref_orthodb", "2906101at2759", "" ], [ "Q9VZZ6-1", "protein_xref_orthodb", "316530at2759", "" ], [ "A1ZAX1-1", "protein_xref_orthodb", "5482362at2759", "" ], [ "A0A0B4KFC0-1", "protein_xref_orthodb", "3353821at2759", "" ], [ "A0A0B4KFC4-1", "protein_xref_orthodb", "2384378at2759", "" ], [ "Q86S05-1", "protein_xref_orthodb", "5402202at2759", "" ], [ "P17336-1", "protein_xref_orthodb", "3198922at2759", "" ], [ "A0A0B4KFC9-1", "protein_xref_orthodb", "277019at2759", "" ], [ "A8JQT5-1", "protein_xref_orthodb", "2876516at2759", "" ], [ "P56079-1", "protein_xref_orthodb", "5481516at2759", "" ], [ "Q9W0I6-1", "protein_xref_orthodb", "996872at2759", "" ], [ "Q7KN74-1", "protein_xref_orthodb", "25200at2759", "" ], [ "Q7KN75-1", "protein_xref_orthodb", "5489311at2759", "" ], [ "Q9VWS8-1", "protein_xref_orthodb", "3537265at2759", "" ], [ "Q9VWS9-1", "protein_xref_orthodb", "3584622at2759", "" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref OrthoDB\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2022-08-31T13:25:53.921490\n\nModified on\n - 2022-09-26T09:08:12.688276\n\nCreated by\n - [jeetvora@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref OrthoDB contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology.\n\nDescription Domain\n Keywords\n - orthologs\n - OrthoDB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_orthodb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_orthodb.csv\n Name: fruitfly_protein_xref_orthodb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_orthodb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13354\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"9228\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_orthodb.csv" }