{ "bcoid": "GLY_000649", "title": "Fruitfly Protein Names (NCBI RefSeq)", "description": "The Fruitfly Protein Names (NCBI RefSeq) dataset contains fruitfly [taxid:7227] protein names (primary ...", "filename": "fruitfly_protein_proteinnames_refseq.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tags": [ "Protein Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q9VE85-1...", "NP_650716..." ], [ "Q9VE85-1...", "NP_650716..." ] ], "headers": [ "uniprotkb_ca...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "refseq_protein_name" } ], [ "Q9VE85-1", "NP_650716", "nucleoporin 43kD" ], [ "Q9VE85-1", "NP_650716", "CG7671-PA; Nup43-PA; nucleoporin 43" ], [ "M9PEG2-1", "NP_001097522", "uncharacterized protein, isoform B" ], [ "M9PEG2-1", "NP_001097522", "CG13288-PB" ], [ "A1ZAX1-1", "NP_001286545", "eukaryotic translation initiation factor 3 subunit c, isoform B" ], [ "A1ZAX1-1", "NP_001286545", "CG4954-PB; eIF3c-PB; eIF3-S8" ], [ "Q9W277-1", "NP_611651", "vacuolar protein sorting 35, isoform A" ], [ "Q9W277-1", "NP_611651", "CG5625-PA; Vps35-PA" ], [ "A1Z8T9-1", "NP_001163124", "uncharacterized protein, isoform B" ], [ "A1Z8T9-1", "NP_001163124", "CG8407-PB" ], [ "A1ZAI3-1", "NP_001286495", "uncharacterized protein, isoform D" ], [ "A1ZAI3-1", "NP_001286495", "CG8303-PD" ], [ "Q9VXY2-1", "NP_001259559", "Rab3 GDP-GTP exchange factor, isoform G" ], [ "Q9VXY2-1", "NP_001259559", "CG5627-PG; Rab3-GEF-PG; rab3-GEF" ], [ "Q01583-4", "NP_001097219", "diacyl glycerol kinase, isoform E" ], [ "Q01583-4", "NP_001097219", "CG34361-PE; Dgk-PE; diacylglycerol kinase" ], [ "E1JJ52-1", "NP_730989", "pollux, isoform D" ], [ "E1JJ52-1", "NP_730989", "CG42612-PD; plx-PD; pollux" ], [ "A0A0B4K6N4-1", "NP_001163775", "tropomodulin, isoform H" ], [ "A0A0B4K6N4-1", "NP_001163775", "CG1539-PH; tmod-PH; sanpodo; tropmodulin; tropomodulin" ], [ "A1ZBY1-1", "NP_611508", "Fem-1, isoform A" ], [ "A1ZBY1-1", "NP_611508", "CG9025-PA; Fem-1-PA" ], [ "Q9W1G7-1", "NP_001246485", "nucleosome assembly protein 1, isoform B" ], [ "Q9W1G7-1", "NP_001246485", "CG5330-PB; Nap1-PB; nucleosome assembly protein 1" ], [ "Q8IR55-1", "NP_727770", "mushroom body defect, isoform F" ], [ "Q8IR55-1", "NP_727770", "CG12047-PF; mud-PF; mushroom body defect; mushroom body defective; mushroom bodies deranged" ], [ "Q9VY44-1", "NP_572952", "mRNA-capping-enzyme" ], [ "Q9VY44-1", "NP_572952", "CG1810-PA; mRNA-cap-PA; mRNA capping enzyme" ], [ "Q9VB31-1", "NP_001287562", "cytochrome P450 6a18, isoform B" ], [ "Q9VB31-1", "NP_001287562", "CG13977-PB; Cyp6a18-PB; cytochrome P450" ], [ "A0A0B4LH78-1", "NP_001287358", "48 related 2, isoform C" ], [ "A0A0B4LH78-1", "NP_001287358", "CG5952-PC; Fer2-PC; 48-related 2; 48-related-2; ferritin 2" ], [ "A8JUS8-1", "NP_001096858", "uncharacterized protein, isoform B" ], [ "A8JUS8-1", "NP_001096858", "CG13373-PB" ], [ "Q9VG05-1", "NP_001247080", "uncharacterized protein, isoform F" ], [ "Q9VG05-1", "NP_001247080", "CG7518-PF" ], [ "Q9VZA4-1", "NP_001286936", "uncharacterized protein, isoform K" ], [ "Q9VZA4-1", "NP_001286936", "CG42540-PK" ], [ "Q9V9Y9-1", "NP_651858", "spn-F, isoform A" ], [ "Q9V9Y9-1", "NP_651858", "CG12114-PA; spn-F-PA; lethal (3) S113003b; Spindle-F; spindle F" ], [ "Q9VNL2-1", "NP_731042", "Odorant-binding protein 83ef" ], [ "Q9VNL2-1", "NP_731042", "CG31557-PA; Obp83ef-PA; Odorant-binding protein 83f; pseudogene 83e" ], [ "Q8SZ63-1", "NP_651250", "Golgin-84" ], [ "Q8SZ63-1", "NP_651250", "CG17785-PA; Golgin84-PA; Golgin-84 ortholog" ], [ "Q9VU38-1", "NP_729863", "adenosine kinase 2, isoform B" ], [ "Q9VU38-1", "NP_729863", "CG11255-PB; Adk2-PB; adenosine kinase" ], [ "Q9VF25-1", "NP_650499", "PSEA-binding protein 45kD" ], [ "Q9VF25-1", "NP_650499", "CG9597-PA; Pbp45-PA; PSEA-binding protein; drosophila melanogaster PSE-binding protein 45-kDa subunit" ], [ "Q9VF20-1", "NP_650503", "heavy metal tolerance factor 1" ], [ "Q9VF20-1", "NP_650503", "CG4225-PA; Hmt-1-PA" ], [ "Q9NFV8-1", "NP_523578", "Thioester-containing protein 1" ], [ "Q9NFV8-1", "NP_523578", "CG18096-PA; Tep1-PA; TEP; thiolester containing protein I; thioester containing protein I" ], [ "A8DYB7-1", "NP_001246280", "dystrobrevin, isoform G" ], [ "A8DYB7-1", "NP_001246280", "CG8529-PG; Dyb-PG; Dystrobrevin-like" ], [ "Q8SY13-1", "NP_609830", "beaten path IIIc, isoform B" ], [ "Q8SY13-1", "NP_609830", "CG15138-PB; beat-IIIc-PB; Beat-IIIC" ], [ "Q9VGJ3-1", "NP_650107", "uncharacterized protein" ], [ "Q9VGJ3-1", "NP_650107", "CG14718-PA" ], [ "Q9VGJ6-1", "NP_650105", "uncharacterized protein, isoform A" ], [ "Q9VGJ6-1", "NP_650105", "CG6908-PA" ], [ "Q9VGJ8-1", "NP_650103", "uncharacterized protein" ], [ "Q9VGJ8-1", "NP_650103", "CG6830-PA" ], [ "Q9VZM6-1", "NP_647831", "uncharacterized protein" ], [ "Q9VZM6-1", "NP_647831", "CG32262-PA" ], [ "Q7K1W8-1", "NP_001260075", "uncharacterized protein, isoform G" ], [ "Q7K1W8-1", "NP_001260075", "CG31650-PG" ], [ "Q9W371-1", "NP_572541", "uncharacterized protein" ], [ "Q9W371-1", "NP_572541", "CG15368-PA" ], [ "A0A0B4LG97-1", "NP_001286356", "uncharacterized protein, isoform A" ], [ "A0A0B4LG97-1", "NP_001286356", "CG45086-PA" ], [ "Q9VTP0-1", "NP_729748", "cubulin 2" ], [ "Q9VTP0-1", "NP_729748", "CG42255-PB; Cubn2-PB; Cubulin2" ], [ "Q9VTP4-1", "NP_648514", "ribosomal protein L10Ab, isoform A" ], [ "Q9VTP4-1", "NP_648514", "CG7283-PA; RpL10Ab-PA; ribosomal protein L10Ab" ], [ "X2JJX6-1", "NP_001285192", "Leucine-rich repeat-containing G protein-coupled receptor 4, isoform C" ], [ "X2JJX6-1", "NP_001285192", "CG34411-PC; Lgr4-PC" ], [ "Q9VVS4-1", "NP_649057", "mediator complex subunit 11" ], [ "Q9VVS4-1", "NP_649057", "CG6884-PA; MED11-PA; RNA poll II transcription mediator" ], [ "Q9VVS6-1", "NP_649059", "Autophagy-related 3" ], [ "Q9VVS6-1", "NP_649059", "CG6877-PA; Atg3-PA; Autophagy-specific gene 3; Aut1" ], [ "A1Z8G0-1", "NP_001137642", "menage a trois, isoform B" ], [ "A1Z8G0-1", "NP_001137642", "CG30021-PB; metro-PB; skiff; menage a trois" ], [ "A0A126GUV0-1", "NP_001303466", "uncharacterized protein, isoform C" ], [ "A0A126GUV0-1", "NP_001303466", "CG10407-PC" ] ] }, "readme": "Name\n - Fruitfly Protein Names (NCBI RefSeq)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2022-08-31T10:35:44.201343\n\nModified on\n - 2022-09-26T09:08:12.585707\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Protein Names (NCBI RefSeq) dataset contains fruitfly [taxid:7227] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein names\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_refseq.csv\n Output Subdomain\n Name: fruitfly_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_proteinnames_refseq.csv\n Name: fruitfly_protein_proteinnames_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_proteinnames_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1582\"\n Name: \"refseq_ac\"\n Description: \"Accession in the NCBI RefSeq database\"\n Unique Values: \"1684\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"2729\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_proteinnames_refseq.csv" }