{
    "bcoid": "GLY_000642",
    "title": "Fruitfly Gene Names (NCBI RefSeq)",
    "description": "The Fruitfly Gene Names (NCBI RefSeq) dataset contains fruitfly [taxid:7227] gene Names/names (primary ...",
    "filename": "fruitfly_protein_genenames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tags": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "B7Z101-1...",
                "NP_001138216..."
            ],
            [
                "B7Z101-1...",
                "NP_001138216..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_gene_name"
                }
            ],
            [
                "B7Z101-1",
                "NP_001138216",
                "CG10597"
            ],
            [
                "B7Z101-1",
                "NP_001138216",
                "Dmel\\CG10597"
            ],
            [
                "Q7KU18-1",
                "NP_608696",
                "CG15395"
            ],
            [
                "Q7KU18-1",
                "NP_608696",
                "Dmel\\CG15395"
            ],
            [
                "Q9VJT4-1",
                "NP_609705",
                "ms(2)34Fe"
            ],
            [
                "Q9VJT4-1",
                "NP_609705",
                "BG:DS01068.1; br40; CG15287; Dmel\\CG15287; l(2)34Fe; ms(2)34Fh; ms(2)br40; ms34Fe"
            ],
            [
                "Q9VZL1-1",
                "NP_523910",
                "mge"
            ],
            [
                "Q9VZL1-1",
                "NP_523910",
                "BcDNA:LP07226; CG14981; Dmel\\CG14981; l(3)63Fc; l(3)SH3; MGE"
            ],
            [
                "Q9VF02-1",
                "NP_001287351",
                "Hel89B"
            ],
            [
                "Q9VF02-1",
                "NP_001287351",
                "89B; BTAF1; CG4261; Dmel\\CG4261; HEL89B; Helicase89B; Mot1"
            ],
            [
                "Q27237-1",
                "NP_001286777",
                "CG5504"
            ],
            [
                "Q27237-1",
                "NP_001286777",
                "cDNA 10D; Dmel\\CG5504; DnaJ; l(2)701; l(2)tid; l(2)tud; lethal (2) tumorous imaginal discs; TID56"
            ],
            [
                "Q9VIP9-1",
                "NP_001286094",
                "barr"
            ],
            [
                "Q9VIP9-1",
                "NP_001286094",
                "38B.3; Barr; Barren; Cap-H; CAP-H; CapH; CG10726; CG14684; dCap-H; Dmel\\CG10726"
            ],
            [
                "Q9VID4-1",
                "NP_001163032",
                "Mondo"
            ],
            [
                "Q9VID4-1",
                "NP_001163032",
                "154826_at; anon-39Da; bHLHd12; CG18362; ChREBP; Dmel\\CG18362; dmondo; mio; Mio; mlx; mondo; Mondo-Mlx"
            ],
            [
                "Q9VTG6-1",
                "NP_648447",
                "CG14142"
            ],
            [
                "Q9VTG6-1",
                "NP_648447",
                "Dmel\\CG14142"
            ],
            [
                "P13097-1",
                "NP_536753",
                "E(spl)m7-HLH"
            ],
            [
                "P13097-1",
                "NP_536753",
                "bHLHb35; CG8361; Dmel\\CG8361; E(spl) m7; E(spl)-m7; E(spl)-M7; E(spl)m7; E(spl)M7; E(SPL)m7; En(spl)m7; ESPL; HLH-m7; HlHm7; HLHm7; m7; M7"
            ],
            [
                "Q9W1F0-1",
                "NP_611858",
                "CG13566"
            ],
            [
                "Q9W1F0-1",
                "NP_611858",
                "Dmel\\CG13566"
            ],
            [
                "Q9V428-1",
                "NP_001285902",
                "ics"
            ],
            [
                "Q9V428-1",
                "NP_001285902",
                "BG:BACR48E02.4; CG9031; CT25926; Dmel\\CG9031; Ics; Rsu-1; RSU-1; Rsu1; RSU1"
            ],
            [
                "Q9VZX7-1",
                "NP_001261341",
                "Atg2"
            ],
            [
                "Q9VZX7-1",
                "NP_001261341",
                "atg2; ATG2; CG1241; Dmel\\CG1241; EP3697"
            ],
            [
                "Q9VVJ7-1",
                "NP_649000",
                "CG7484"
            ],
            [
                "Q9VVJ7-1",
                "NP_649000",
                "BcDNA:SD16138; Dmel\\CG7484; Prise 8; Sep15"
            ],
            [
                "Q9NBD7-1",
                "NP_524651",
                "chb"
            ],
            [
                "Q9NBD7-1",
                "NP_524651",
                "0686/07; anon-WO0104295; BcDNA:LD31673; CG32435; Chb; chb(v40); chb/mast/orbit; clasp; CLASP; dCLASP; DMAP160; Dmel\\CG32435; mast; Mast; MAST; mast/orbit; Mast/Orbit; MAST/Orbit; MESR7; NEST:bs13a06; NEST:bs17d05; NEST:bs28g05; orb; orbit; Orbit; orbit/mast; orbit/MAST; Orbit/Mast; Orbit/MAST; v40"
            ],
            [
                "Q9W530-1",
                "NP_569974",
                "CG14054"
            ],
            [
                "Q9W530-1",
                "NP_569974",
                "BcDNA:AT13882; Dmel\\CG14054"
            ],
            [
                "P17886-1",
                "NP_477118",
                "crn"
            ],
            [
                "P17886-1",
                "NP_477118",
                "62D9.a; CG18842; CG3193; Crn; Dmel\\CG3193; EG:30B8.1; l(1)2; l(1)2Fa; l(1)crn; l(1)CRN; l(1)N7; l30; N10; N5; RC63; yok"
            ],
            [
                "M9MS30-1",
                "NP_001188557",
                "CG42705"
            ],
            [
                "M9MS30-1",
                "NP_001188557",
                "CG47205; Dmel\\CG42705"
            ],
            [
                "Q9VZ26-1",
                "NP_001245617",
                "CG15199"
            ],
            [
                "Q9VZ26-1",
                "NP_001245617",
                "DIGF-3; Dmel\\CG15199"
            ],
            [
                "Q07407-1",
                "NP_524394",
                "htl"
            ],
            [
                "Q07407-1",
                "NP_524394",
                "CG7223; CT22273; CT39172; DFGF-R1; DFGF-R2; Dfr-1; DFR-1; Dfr1; DFR1; DFR1/DFGF-R2; Dmel\\CG7223; DmHD-38; DPR3; dtk1; Dtk1; DTRK(FR1); EMS2; FGF-R2; FGFR; FGFR2; Fr1; FR1; HD-38; Htl; HTL/FGFR1; i100; i150; i79; j372; Tk1"
            ],
            [
                "Q9VR36-1",
                "NP_608867",
                "CG11927"
            ],
            [
                "Q9VR36-1",
                "NP_608867",
                "Dmel\\CG11927"
            ],
            [
                "Q9VL60-1",
                "NP_001285787",
                "CG13126"
            ],
            [
                "Q9VL60-1",
                "NP_001285787",
                "anon-WO0118547.208; Dmel\\CG13126; METTL17"
            ],
            [
                "Q9VTP4-1",
                "NP_648514",
                "RpL10Ab"
            ],
            [
                "Q9VTP4-1",
                "NP_648514",
                "anon-EST:Posey188; BcDNA:RH06366; CG7283; Dmel\\CG7283; L1; L10Ab; RpL10; RpL10a; RpL10A; Rpl10ab; RpL10Ae"
            ],
            [
                "Q400N2-1",
                "NP_001261866",
                "Plp"
            ],
            [
                "Q400N2-1",
                "NP_001261866",
                "AKAP450; CG13459; CG18648; CG33957; CG6735; cp309; Cp309; CP309; d-plp; D-Plp; D-PLP; Dmel\\CG33957; dplp; dPLP; Dplp; DPlp; DPLP; l(3)s2172; Pact; PACT; PCNT; plp; PLP; pPlp"
            ],
            [
                "A0A6I8WFJ4-1",
                "NP_001104054",
                "Gpa2"
            ],
            [
                "A0A6I8WFJ4-1",
                "NP_001104054",
                "CG17878; Dmel\\CG17878; gpa2; GPA2"
            ],
            [
                "Q9W3J1-1",
                "NP_572452",
                "Gbeta5"
            ],
            [
                "Q9W3J1-1",
                "NP_572452",
                "CG10763; Dmel\\CG10763; Gbeta; Gbeta 5; Gbetagamma; GNB5; G[[beta5]]; G[[beta]]"
            ],
            [
                "Q9VNG6-1",
                "NP_649574",
                "Rab23"
            ],
            [
                "Q9VNG6-1",
                "NP_649574",
                "CG2108; Dmel\\CG2108; DmRab23; Q9VNG6; rab23"
            ],
            [
                "Q9VHS4-1",
                "NP_524277",
                "Or85a"
            ],
            [
                "Q9VHS4-1",
                "NP_524277",
                "85a; 85A.4; CG7454; Dmel\\CG7454; DmOr85a; DmOR85A; DOR31; Or-85a; or85a; OR85a"
            ],
            [
                "Q9VEH9-1",
                "NP_001287377",
                "CG14327"
            ],
            [
                "Q9VEH9-1",
                "NP_001287377",
                "BcDNA:RE25364; Dmel\\CG14327"
            ],
            [
                "A0A0B4KGE5-1",
                "NP_524724",
                "bon"
            ],
            [
                "A0A0B4KGE5-1",
                "NP_524724",
                "0241/08; 0249/12; 0434/20; 0487/06; 150268_at; 150269_at; anon-WO0118547.418; Bon; Bonus; CG15687; CG5206; Dmel\\CG5206; l(3)S043420"
            ],
            [
                "Q9VCX3-1",
                "NP_651072",
                "mRpL45"
            ],
            [
                "Q9VCX3-1",
                "NP_651072",
                "CG6949; Dmel\\CG6949; l(3)A8; l(3)dsl-8; l(3)dsl8; l(3)SG61; MRP-L45; XI-2"
            ],
            [
                "Q9VBD5-1",
                "NP_733160",
                "TwdlN"
            ],
            [
                "Q9VBD5-1",
                "NP_733160",
                "BcDNA:RE20092; BcDNA:RE59605; CG5476; chr3R:22457526..22457631; Dmel\\CG5476"
            ],
            [
                "Q0KHY5-1",
                "NP_001036778",
                "CG34155"
            ],
            [
                "Q0KHY5-1",
                "NP_001036778",
                "Dmel\\CG34155"
            ],
            [
                "Q9W0N5-1",
                "NP_612054",
                "CG13894"
            ],
            [
                "Q9W0N5-1",
                "NP_612054",
                "dmCG13894; Dmel\\CG13894"
            ],
            [
                "Q8IRB3-1",
                "NP_729000",
                "CG32241"
            ],
            [
                "Q8IRB3-1",
                "NP_729000",
                "Dmel\\CG32241"
            ],
            [
                "Q9GNK5-1",
                "NP_001163396",
                "PGRP-LC"
            ],
            [
                "Q9GNK5-1",
                "NP_001163396",
                "(PGRP)-LC; CG4432; Dm PGRP-LC; Dmel\\CG4432; ird7; pgrp; pgrp lc; pgrp-lc; Pgrp-LC; PGRP-LCa; PGRP-LCd; PGRP-LCx; PGRPLC; tot"
            ],
            [
                "Q9VT90-1",
                "NP_524018",
                "Or67c"
            ],
            [
                "Q9VT90-1",
                "NP_524018",
                "67c; 67D.1; CG14156; Dmel\\CG14156; DmOR67C; DOR77; OR67c"
            ],
            [
                "X2JGL7-1",
                "NP_648565",
                "Sms"
            ],
            [
                "X2JGL7-1",
                "NP_648565",
                "anon-WO0118547.387; CG4300; Dmel\\CG4300; dSms"
            ],
            [
                "Q9VVU8-1",
                "NP_001246828",
                "COX6AL2"
            ],
            [
                "Q9VVU8-1",
                "NP_001246828",
                "CG14077; Dmel\\CG14077; VIa"
            ],
            [
                "Q9VRI1-1",
                "NP_001285519",
                "whe"
            ],
            [
                "Q9VRI1-1",
                "NP_001285519",
                "BcDNA:GH04760; CG1678; Dmel\\CG1678"
            ],
            [
                "Q8IMN9-1",
                "NP_001189302",
                "CG31068"
            ],
            [
                "Q8IMN9-1",
                "NP_001189302",
                "BcDNA:AT10318; Dmel\\CG31068"
            ],
            [
                "Q9NJH0-1",
                "NP_001189308",
                "eEF1gamma"
            ],
            [
                "Q9NJH0-1",
                "NP_001189308",
                "CG11901; Dmel\\CG11901; EF1 gamma; Ef1Bggr; Ef1gamma; EF1gamma; Ef1y"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Gene Names (NCBI RefSeq)\n\nVersion\n   - v-2.1.1\n\nCreated on\n  - 2022-08-30T15:40:57.216837\n\nModified on\n   - 2022-09-26T09:08:12.476226\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Gene Names (NCBI RefSeq) dataset contains fruitfly [taxid:7227] gene Names/names (primary gene name and gene synonyms)  from NCBI RefSeq database.  If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein gene names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the gene Names/names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_refseq.csv\n   Output Subdomain\n      Name: fruitfly_protein_genenames_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_genenames_refseq.csv\n      Name: fruitfly_protein_genenames_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_genenames_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1131\"\n      Name: \"refseq_ac\"\n     Description: \"Accession in the NCBI RefSeq database\"\n      Unique Values: \"1131\"\n      Name: \"refseq_gene_name\"\n     Description: \"The gene name/symbol in NCBI RefSeq database.\"\n      Unique Values: \"2262\"",
    "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_genenames_refseq.csv"
}