{ "bcoid": "GLY_000641", "title": "Fruitfly Gene Names (UniProtKB)", "description": "The Fruitfly Gene Names (UniProtKB) dataset contains UniProtKB gene Names/names for fruitfly [taxid:7227] ...", "filename": "fruitfly_protein_genenames_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tags": [ "Gene Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "M9PJ12-1...", "CG32778..." ], [ "M9PJ12-1...", "CG32778..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol_recommended" }, { "type": "string", "label": "gene_symbol_alternative" }, { "type": "string", "label": "orf_name" } ], [ "M9PJ12-1", "CG32778", "CG15376", "CG43689" ], [ "M9PJ12-1", "CG32778", "CG32790", "CG43689" ], [ "M9PJ12-1", "CG32778", "CG43284", "CG43689" ], [ "M9PJ12-1", "CG32778", "CG4985", "CG43689" ], [ "M9PJ12-1", "CG32778", "Dmel\\CG43689", "CG43689" ], [ "M9PJ12-1", "CG32778", "CG15376", "Dmel_CG43689" ], [ "M9PJ12-1", "CG32778", "CG32790", "Dmel_CG43689" ], [ "M9PJ12-1", "CG32778", "CG43284", "Dmel_CG43689" ], [ "M9PJ12-1", "CG32778", "CG4985", "Dmel_CG43689" ], [ "M9PJ12-1", "CG32778", "Dmel\\CG43689", "Dmel_CG43689" ], [ "P34082-1", "Fas2", "Fas", "CG3665" ], [ "P34082-1", "Fas2", "FAS II", "CG3665" ], [ "P34082-1", "Fas2", "1D4", "CG3665" ], [ "P34082-1", "Fas2", "Ab 1D4", "CG3665" ], [ "P34082-1", "Fas2", "CT12301", "CG3665" ], [ "P34082-1", "Fas2", "Dmel\\CG3665", "CG3665" ], [ "P34082-1", "Fas2", "EG:EG0007.3", "CG3665" ], [ "P34082-1", "Fas2", "FAS 11", "CG3665" ], [ "P34082-1", "Fas2", "FAS2", "CG3665" ], [ "P34082-1", "Fas2", "FASII", "CG3665" ], [ "P34082-1", "Fas2", "Fas 2", "CG3665" ], [ "P34082-1", "Fas2", "Fas II", "CG3665" ], [ "P34082-1", "Fas2", "Fas-II", "CG3665" ], [ "P34082-1", "Fas2", "FasII", "CG3665" ], [ "P34082-1", "Fas2", "Fasc II", "CG3665" ], [ "P34082-1", "Fas2", "FascII", "CG3665" ], [ "P34082-1", "Fas2", "Fasii", "CG3665" ], [ "P34082-1", "Fas2", "MAB1D4", "CG3665" ], [ "P34082-1", "Fas2", "anon-EST:Liang-1.60", "CG3665" ], [ "P34082-1", "Fas2", "clone 1.60", "CG3665" ], [ "P34082-1", "Fas2", "fas II", "CG3665" ], [ "P34082-1", "Fas2", "fas-II", "CG3665" ], [ "P34082-1", "Fas2", "fas2", "CG3665" ], [ "P34082-1", "Fas2", "fasII", "CG3665" ], [ "P34082-1", "Fas2", "fasciclin II", "CG3665" ], [ "P34082-1", "Fas2", "l(1)G0032", "CG3665" ], [ "P34082-1", "Fas2", "l(1)G0048", "CG3665" ], [ "P34082-1", "Fas2", "l(1)G0081", "CG3665" ], [ "P34082-1", "Fas2", "l(1)G0293", "CG3665" ], [ "P34082-1", "Fas2", "l(1)G0336", "CG3665" ], [ "P34082-1", "Fas2", "mAB1D4", "CG3665" ], [ "P34082-1", "Fas2", "mAb 1D4", "CG3665" ], [ "P34082-1", "Fas2", "mAb1D4", "CG3665" ], [ "P34082-1", "Fas2", "Fas", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "FAS II", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "1D4", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "Ab 1D4", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "CT12301", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "Dmel\\CG3665", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "EG:EG0007.3", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "FAS 11", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "FAS2", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "FASII", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "Fas 2", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "Fas II", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "Fas-II", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "FasII", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "Fasc II", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "FascII", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "Fasii", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "MAB1D4", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "anon-EST:Liang-1.60", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "clone 1.60", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "fas II", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "fas-II", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "fas2", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "fasII", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "fasciclin II", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "l(1)G0032", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "l(1)G0048", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "l(1)G0081", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "l(1)G0293", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "l(1)G0336", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "mAB1D4", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "mAb 1D4", "Dmel_CG3665" ], [ "P34082-1", "Fas2", "mAb1D4", "Dmel_CG3665" ], [ "P40796-1", "La", "", "CG10922" ], [ "P40797-1", "pnut", "", "CG8705" ], [ "P40794-1", "bnk", "", "CG1480" ], [ "P40795-1", "fog", "", "CG9559" ], [ "P40792-1", "Rac1", "RacA", "CG2248" ], [ "P40793-1", "Cdc42", "", "CG12530" ], [ "P40791-1", "Mef2", "", "CG1429" ], [ "P40798-1", "stc", "", "CG3647" ] ] }, "readme": "Name\n - Fruitfly Gene Names (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - \n\nModified on\n - 2022-09-26T09:08:12.751848\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Gene Names (UniProtKB) dataset contains UniProtKB gene Names/names for fruitfly [taxid:7227] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature commitees. (for more info - https://www.uniprot.org/help/gene_name). If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB gene Names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_genenames_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_genenames_uniprotkb.csv\n Name: fruitfly_protein_genenames_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_genenames_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13821\"\n Name: \"gene_symbol_recommended\"\n Description: \"\"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\"\n Unique Values: \"14258\"\n Name: \"gene_symbol_alternative\"\n Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n Unique Values: \"44624\"\n Name: \"orf_name\"\n Description: \"\"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\"\n Unique Values: \"25933\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_genenames_uniprotkb.csv" }