{ "bcoid": "GLY_000635", "title": "Fruitfly Protein Alternative Name (UniProtKB)", "description": "The Fruitfly Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for fruitfly ...", "filename": "fruitfly_protein_altnames.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tags": [ "Protein Alternative Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P40796-1...", "La ribonucle..." ], [ "P40796-1...", "La autoantig..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "P40796-1", "La ribonucleoprotein", "", "" ], [ "P40796-1", "La autoantigen homolog", "", "" ], [ "P40791-1", "MADS domain transcription factor", "", "" ], [ "P40421-1", "Retinal degeneration C protein", "", "" ], [ "P40423-1", "Myosin regulatory light chain, nonmuscle", "MRLC-C", "" ], [ "P40423-1", "Protein spaghetti-squash", "", "" ], [ "P08841-1", "Beta-3-tubulin", "", "" ], [ "Q9VE86-1", "Werner Syndrome-like exonuclease", "DmWRNexo", "" ], [ "P05389-1", "Acidic ribosomal protein RPA1", "", "" ], [ "A1ZB42-1", "Mediator complex subunit 9", "", "" ], [ "Q02870-1", "ATP-dependent DNA helicase hay", "", "" ], [ "Q02870-1", "ERCC-3 homolog protein", "", "" ], [ "Q02870-1", "DNA excision repair protein haywire", "", "" ], [ "Q02870-1", "ERCC3Dm", "", "" ], [ "Q7JUM3-1", "GlcNAc-PI synthesis protein", "", "" ], [ "Q8SXV2-1", "Protein sleepless", "", "" ], [ "Q95R35-1", "Leucyl aminopeptidase", "", "" ], [ "Q95R35-1", "Prolyl aminopeptidase", "", "" ], [ "Q95R35-1", "Leucine aminopeptidase 3", "", "" ], [ "Q95R35-1", "Proline aminopeptidase", "", "" ], [ "Q95R35-1", "Cysteinylglycine-S-conjugate dipeptidase", "", "" ], [ "Q9VWS2-1", "Nucleoporin Nup53", "", "" ], [ "Q9VWS2-1", "35 kDa nucleoporin", "", "" ], [ "Q9VWS2-1", "Nuclear pore complex protein Nup35", "", "" ], [ "Q9VUR3-1", "aaRS-interacting multifunctional protein 2", "", "" ], [ "Q9VUR3-1", "Probable multisynthase complex auxiliary component p38", "", "" ], [ "P11996-1", "Hexamerin-1-beta", "", "" ], [ "P11997-1", "Hexamerin-1-gamma", "", "" ], [ "P11995-1", "Hexamerin-1-alpha", "", "" ], [ "P03896-1", "NADH dehydrogenase subunit 2", "", "" ], [ "Q9VH70-1", "Protein matotopetli", "", "" ], [ "A1Z9R4-1", "O/E-associated zinc finger protein", "", "" ], [ "Q9VTC2-1", "Protein cappuccino homolog", "", "" ], [ "Q9VKQ9-1", "Dpy-30-like protein 1", "", "" ], [ "P55035-1", "p54", "", "" ], [ "P55035-1", "26S proteasome regulatory subunit RPN10", "", "" ], [ "P55035-1", "26S proteasome regulatory subunit S5A", "", "" ], [ "P55035-1", "54 kDa subunit of mu particle", "", "" ], [ "P55035-1", "Multiubiquitin chain-binding protein", "", "" ], [ "Q7JQ32-1", "DrGC-1", "", "" ], [ "A1ZBY1-1", "dFEM-1", "", "" ], [ "Q9VY44-1", "GTP--RNA guanylyltransferase", "GTase", "" ], [ "Q9VY44-1", "mRNA 5'-phosphatase", "", "" ], [ "Q9VCT3-1", "Very-long-chain 3-oxoacyl-CoA synthase", "", "" ], [ "P06607-1", "Vitellogenin III", "", "" ], [ "P06607-1", "Yolk protein 3", "", "" ], [ "Q9VWN9-1", "Protein dorado", "", "" ], [ "Q9VWN5-1", "Deubiquitinating enzyme MINDY-3", "", "" ], [ "Q9VWN5-1", "Protein CARP homolog", "", "" ], [ "Q9GYU7-1", "dTRAP15", "", "" ], [ "Q9GYU7-1", "Mediator complex subunit 10", "", "" ], [ "Q9GYU7-1", "dMED10", "", "" ], [ "P00522-1", "Protein abelson", "", "" ], [ "P00522-1", "D-ash", "", "" ], [ "P08736-1", "50 kDa female-specific protein", "", "" ], [ "Q9VNL3-1", "Vacuolar H+ ATPase subunit 14-2", "", "" ], [ "Q9VNL3-1", "Vacuolar proton pump subunit F 2", "", "" ], [ "Q9VU38-1", "Adenosine 5'-phosphotransferase", "", "" ], [ "Q9VU31-1", "Exonuclease 3'-5' domain-like-containing protein 1 homolog", "", "" ], [ "Q9VU31-1", "Exonuclease 3'-5' domain-containing protein 1 homolog", "", "" ], [ "P40320-1", "Methionine adenosyltransferase", "MAT", "" ], [ "Q9VF26-1", "Homeless", "", "" ], [ "Q9VF20-1", "ABC-type heme transporter ABCB6", "", "" ], [ "P49846-1", "Transcription initiation factor TFIID 85 kDa subunit", "p85", "" ], [ "P49846-1", "TAFII-80", "", "" ], [ "O16844-1", "Kinesin-like protein costal2", "", "" ], [ "Q9VGJ5-1", "Nephew of atonal 3", "", "" ], [ "Q9VGJ5-1", "Neuronal twist", "", "" ], [ "Q9VGJ5-1", "Basic helix-loop-helix protein N-twist", "", "" ], [ "Q9W376-1", "Cytochrome b5 domain-containing protein 2 homolog", "", "" ], [ "Q9W374-1", "Dihydrothymine dehydrogenase", "", "" ], [ "Q9W374-1", "Dihydrouracil dehydrogenase", "", "" ], [ "Q9V6L0-1", "Probable [histone H3]-trimethyl-L-lysine(9) demethylase 4B", "", "" ], [ "Q9V6L0-1", "Probable JmjC domain-containing histone demethylation protein 3B", "", "" ], [ "Q9VAP2-1", "Dim gamma-tubulin 6", "", "" ], [ "Q5BI31-1", "Alstrom syndrome protein 1 homolog a", "", "" ], [ "Q9VC44-1", "AST-A2(1-11)", "", "" ], [ "Q9VC44-1", "AST-A1", "", "" ], [ "Q9VC44-1", "AST-A2(14-21)", "", "" ], [ "Q9VC44-1", "AST-A3", "", "" ], [ "Q9VC44-1", "AST-A4", "", "" ], [ "Q9VC44-1", "Allatostatins Ast", "", "" ], [ "Q9VVS4-1", "dMED21", "", "" ], [ "Q9VVS4-1", "Mediator complex subunit 11", "", "" ] ] }, "readme": "Name\n - Fruitfly Protein Alternative Name (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2022-08-30T13:19:31.385999\n\nModified on\n - 2022-09-26T09:08:12.445889\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for fruitfly [taxid:7227] proteins. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_altnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_altnames.csv\n Name: fruitfly_protein_altnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_altnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"2255\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"3308\"\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"487\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"42\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/fruitfly_protein_altnames.csv" }