{ "bcoid": "GLY_000617", "title": "Human Cancer Mutation Loss of Glycosylation", "description": "", "filename": "human_protein_mutation_cancer_glycosylation_loss.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Cancer Mutations Loss of Glycosylation" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q9ULI3-1...", "1139..." ], [ "Q9ULI3-1...", "1139..." ] ], "headers": [ "uniprotkb_ca...", "mut_pos..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "mut_pos" }, { "type": "string", "label": "mut_ref_aa" }, { "type": "string", "label": "mut_alt_aa" }, { "type": "string", "label": "ref_motif" }, { "type": "string", "label": "alt_motif" }, { "type": "string", "label": "do_id" }, { "type": "string", "label": "do_name" }, { "type": "string", "label": 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"protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "10534", "DOID:10534 / stomach cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "9256", "DOID:9256 / colorectal cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "10534", "DOID:10534 / stomach cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "9256", "DOID:9256 / colorectal cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_pubmed", "24190977", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "10534", "DOID:10534 / stomach cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "9256", "DOID:9256 / colorectal cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ], [ "Q9HC56-1", "50", "S", "Y", "NIS", "NIY", "363", "DOID:363 / uterine cancer", "passed", "Somatic mutation passed 1 out of 6 filters: num. of cancers (3).", "biomuta", "48", "N", "", "protein_xref_glygen_ds", "GLY_000143", "0", "literature" ] ] }, "readme": "Name\n - Human Cancer Mutation Loss of Glycosylation\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2021-10-15T15:32:16.971706\n\nModified on\n - 2022-09-26T09:08:12.730456\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_masterlist.csv\n Name: human_protein_mutation_cancer.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_mutation_cancer.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_gptwiki.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n Name: human_proteoform_glycosylation_sites_harvard.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n Name: human_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_literature.csv\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Name: human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Name: human_proteoform_glycosylation_sites_o_gluc.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_o_gluc.csv\n Name: human_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_tyr_o_linked.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_tyr_o_linked.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Name: aadict.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/misc/aadict.csv\n Output Subdomain\n Name: human_protein_mutation_cancer_glycosylation_loss.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv\n Name: human_protein_mutation_cancer_glycosylation_loss.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"28\"\n Name: \"mut_pos\"\n Description: \"\"\n Unique Values: \"27\"\n Name: \"mut_ref_aa\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"mut_alt_aa\"\n Description: \"\"\n Unique Values: \"8\"\n Name: \"ref_motif\"\n Description: \"Reference motif\"\n Unique Values: \"21\"\n Name: \"alt_motif\"\n Description: \"Altered motif\"\n Unique Values: \"24\"\n Name: \"do_id\"\n Description: \"Disease Ontology identifier\"\n Unique Values: \"17\"\n Name: \"do_name\"\n Description: \"Disease Ontology term or name for the disease assigned to the Disease Ontology identifier\"\n Unique Values: \"17\"\n Name: \"mut_flags_score\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"mut_flags\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"mut_source\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"gly_pos\"\n Description: \"\"\n Unique Values: \"27\"\n Name: \"gly_ref_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"51\"\n Name: \"gly_xref_key\"\n Description: \"\"\n Unique Values: \"9\"\n Name: \"gly_xref_id\"\n Description: \"\"\n Unique Values: \"71\"\n Name: \"gly_flags_score\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"gly_source\"\n Description: \"\"\n Unique Values: \"8\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_mutation_cancer_glycosylation_loss.csv" }