{
    "bcoid": "GLY_000613",
    "title": "SARS-CoV2 Protein Names (NCBI RefSeq)",
    "description": "The SARS coronavirus (SARS-CoV-2) Protein Names (NCBI RefSeq) dataset contains sarscov2 [taxid:2697049] ...",
    "filename": "sarscov2_protein_proteinnames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "SARS coronavirus (SARS-CoV-1)"
        ],
        "molecule": [
            "Protein"
        ],
        "tags": [
            "Protein Names"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DTC7-1...",
                "YP_009724395..."
            ],
            [
                "P0DTC6-1...",
                "YP_009724394..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                }
            ],
            [
                "P0DTC7-1",
                "YP_009724395",
                "ORF7a protein"
            ],
            [
                "P0DTC6-1",
                "YP_009724394",
                "ORF6 protein"
            ],
            [
                "P0DTC5-1",
                "YP_009724393",
                "membrane glycoprotein"
            ],
            [
                "P0DTC4-1",
                "YP_009724392",
                "envelope protein"
            ],
            [
                "P0DTC3-1",
                "YP_009724391",
                "ORF3a protein"
            ],
            [
                "P0DTC2-1",
                "YP_009724390",
                "surface glycoprotein"
            ],
            [
                "P0DTC1-1",
                "YP_009725295",
                "ORF1a polyprotein"
            ],
            [
                "P0DTC9-1",
                "YP_009724397",
                "nucleocapsid phosphoprotein"
            ],
            [
                "P0DTC8-1",
                "YP_009724396",
                "ORF8 protein"
            ],
            [
                "P0DTD1-1",
                "YP_009724389",
                "ORF1ab polyprotein"
            ],
            [
                "P0DTD8-1",
                "YP_009725318",
                "ORF7b"
            ],
            [
                "A0A663DJA2-1",
                "YP_009725255",
                "ORF10 protein"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Protein Names (NCBI RefSeq)\n\nVersion\n   - v-2.1.1\n\nCreated on\n  - 2021-10-15T15:12:11.510967\n\nModified on\n   - 2022-09-26T09:08:12.563488\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2) Protein Names (NCBI RefSeq) dataset contains sarscov2 [taxid:2697049] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov2_protein_xref_refseq.csv\n   Output Subdomain\n      Name: sarscov2_protein_proteinnames_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov2_protein_proteinnames_refseq.csv\n      Name: sarscov2_protein_proteinnames_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov2_protein_proteinnames_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"12\"\n      Name: \"refseq_ac\"\n     Description: \"Accession in the NCBI RefSeq database\"\n      Unique Values: \"12\"\n      Name: \"refseq_protein_name\"\n     Description: \"Name of the protein in NCBI RefSeq database\"\n      Unique Values: \"12\"",
    "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/sarscov2_protein_proteinnames_refseq.csv"
}