{
    "bcoid": "GLY_000599",
    "title": "Rat UniProtKB Xref Rhea",
    "description": "The Rat UniProtKB Xref Rhea contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...",
    "filename": "rat_protein_xref_rhea.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tags": [
            "Rhea cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q5RJZ1-1...",
                "protein_xref..."
            ],
            [
                "Q0HA29-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "Q5RJZ1-1",
                "protein_xref_rhea",
                "13065",
                "ATP + H2O = ADP + H(+) + phosphate"
            ],
            [
                "Q0HA29-1",
                "protein_xref_rhea",
                "21360",
                "ATP + beta-nicotinamide D-ribonucleotide + H(+) = diphosphate + NAD(+)"
            ],
            [
                "Q0HA29-1",
                "protein_xref_rhea",
                "22860",
                "ATP + H(+) + nicotinate beta-D-ribonucleotide = deamido-NAD(+) + diphosphate"
            ],
            [
                "P07727-1",
                "protein_xref_rhea",
                "29823",
                "chloride(in) = chloride(out)"
            ],
            [
                "D4A6Q6-1",
                "protein_xref_rhea",
                "13065",
                "ATP + H2O = ADP + H(+) + phosphate"
            ],
            [
                "Q9JHY2-1",
                "protein_xref_rhea",
                "35031",
                "L-serine(in) = L-serine(out)"
            ],
            [
                "P31646-1",
                "protein_xref_rhea",
                "70687",
                "4-aminobutanoate(out) + chloride(out) + 2 Na(+)(out) = 4-aminobutanoate(in) + chloride(in) + 2 Na(+)(in)"
            ],
            [
                "P31646-1",
                "protein_xref_rhea",
                "71223",
                "chloride(out) + 2 Na(+)(out) + taurine(out) = chloride(in) + 2 Na(+)(in) + taurine(in)"
            ],
            [
                "P31646-1",
                "protein_xref_rhea",
                "71243",
                "chloride(out) + hypotaurine(out) + 2 Na(+)(out) = chloride(in) + hypotaurine(in) + 2 Na(+)(in)"
            ],
            [
                "P31646-1",
                "protein_xref_rhea",
                "71247",
                "beta-alanine(out) + chloride(out) + 2 Na(+)(out) = beta-alanine(in) + chloride(in) + 2 Na(+)(in)"
            ],
            [
                "Q9JJ05-1",
                "protein_xref_rhea",
                "15621",
                "an N-acetyl-alpha-D-galactosaminyl derivative + UDP-alpha-D-galactose = a beta-D-galactosyl-(1->3)-N-acetyl-alpha-D-galactosaminyl derivative + H(+) + UDP"
            ],
            [
                "Q66H84-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "Q66H84-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "Q9R1N3-1",
                "protein_xref_rhea",
                "70267",
                "hydrogencarbonate(in) + Na(+)(in) = hydrogencarbonate(out) + Na(+)(out)"
            ],
            [
                "Q9R1N3-1",
                "protein_xref_rhea",
                "70267",
                "hydrogencarbonate(in) + Na(+)(in) = hydrogencarbonate(out) + Na(+)(out)"
            ],
            [
                "Q9R1N3-1",
                "protein_xref_rhea",
                "70267",
                "hydrogencarbonate(in) + Na(+)(in) = hydrogencarbonate(out) + Na(+)(out)"
            ],
            [
                "D3ZFP4-1",
                "protein_xref_rhea",
                "13065",
                "ATP + H2O = ADP + H(+) + phosphate"
            ],
            [
                "A0A1W2Q641-1",
                "protein_xref_rhea",
                "57720",
                "ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate"
            ],
            [
                "P09875-1",
                "protein_xref_rhea",
                "21032",
                "glucuronate acceptor + UDP-alpha-D-glucuronate = acceptor beta-D-glucuronoside + H(+) + UDP"
            ],
            [
                "A0A8I6ALX9-1",
                "protein_xref_rhea",
                "11092",
                "NAD(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADH"
            ],
            [
                "D3ZCS9-1",
                "protein_xref_rhea",
                "23736",
                "5-hydroxyisourate + H2O = 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate + H(+)"
            ],
            [
                "P63088-1",
                "protein_xref_rhea",
                "20629",
                "H2O + O-phospho-L-seryl-[protein] = L-seryl-[protein] + phosphate"
            ],
            [
                "P63088-1",
                "protein_xref_rhea",
                "47004",
                "H2O + O-phospho-L-threonyl-[protein] = L-threonyl-[protein] + phosphate"
            ],
            [
                "F1LP13-1",
                "protein_xref_rhea",
                "10684",
                "H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate"
            ],
            [
                "P63331-1",
                "protein_xref_rhea",
                "47004",
                "H2O + O-phospho-L-threonyl-[protein] = L-threonyl-[protein] + phosphate"
            ],
            [
                "P53670-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "P53670-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "D3ZT64-1",
                "protein_xref_rhea",
                "38663",
                "a 1,2-diacyl-sn-glycero-3-phospho-L-serine(in) = a 1,2-diacyl-sn-glycero-3-phospho-L-serine(out)"
            ],
            [
                "D3ZT64-1",
                "protein_xref_rhea",
                "38895",
                "a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(in) = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine(out)"
            ],
            [
                "D4AE80-1",
                "protein_xref_rhea",
                "67484",
                "a 5'-end (N(7)-methyl 5'-triphosphoguanosine)-ribonucleoside in mRNA + H2O = a 5'-end phospho-ribonucleoside in mRNA + 2 H(+) + N(7)-methyl-GDP"
            ],
            [
                "Q00972-1",
                "protein_xref_rhea",
                "17301",
                "ATP + L-seryl-[3-methyl-2-oxobutanoate dehydrogenase] = ADP + H(+) + O-phospho-L-seryl-[3-methyl-2-oxobutanoate dehydrogenase]"
            ],
            [
                "E9PSY0-1",
                "protein_xref_rhea",
                "10596",
                "ATP + L-tyrosyl-[protein] = ADP + H(+) + O-phospho-L-tyrosyl-[protein]"
            ],
            [
                "P21575-1",
                "protein_xref_rhea",
                "19669",
                "GTP + H2O = GDP + H(+) + phosphate"
            ],
            [
                "Q64604-1",
                "protein_xref_rhea",
                "10684",
                "H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate"
            ],
            [
                "Q812E8-1",
                "protein_xref_rhea",
                "24384",
                "ATP + deamido-NAD(+) + H2O + L-glutamine = AMP + diphosphate + H(+) + L-glutamate + NAD(+)"
            ],
            [
                "Q63285-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "Q63285-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "Q62730-1",
                "protein_xref_rhea",
                "14929",
                "NAD(+) + testosterone = androst-4-ene-3,17-dione + H(+) + NADH"
            ],
            [
                "Q62730-1",
                "protein_xref_rhea",
                "24612",
                "17beta-estradiol + NAD(+) = estrone + H(+) + NADH"
            ],
            [
                "Q62730-1",
                "protein_xref_rhea",
                "41992",
                "17beta-hydroxy-5alpha-androstan-3-one + NAD(+) = 5alpha-androstan-3,17-dione + H(+) + NADH"
            ],
            [
                "Q62730-1",
                "protein_xref_rhea",
                "42108",
                "(20S)-hydroxypregn-4-en-3-one + NAD(+) = H(+) + NADH + progesterone"
            ],
            [
                "P40329-1",
                "protein_xref_rhea",
                "20301",
                "ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg)"
            ],
            [
                "A0A8I5ZJI2-1",
                "protein_xref_rhea",
                "18673",
                "ATP + L-seryl-[receptor-protein] = ADP + H(+) + O-phospho-L-seryl-[receptor-protein]"
            ],
            [
                "A0A8I5ZJI2-1",
                "protein_xref_rhea",
                "44880",
                "ATP + L-threonyl-[receptor-protein] = ADP + H(+) + O-phospho-L-threonyl-[receptor-protein]"
            ],
            [
                "Q9Z1Z1-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "Q9Z1Z1-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "Q9Z1Z6-1",
                "protein_xref_rhea",
                "20629",
                "H2O + O-phospho-L-seryl-[protein] = L-seryl-[protein] + phosphate"
            ],
            [
                "Q9Z1Z6-1",
                "protein_xref_rhea",
                "47004",
                "H2O + O-phospho-L-threonyl-[protein] = L-threonyl-[protein] + phosphate"
            ],
            [
                "P05708-1",
                "protein_xref_rhea",
                "17825",
                "ATP + D-glucose = ADP + D-glucose 6-phosphate + H(+)"
            ],
            [
                "P05708-1",
                "protein_xref_rhea",
                "22740",
                "ATP + D-hexose = ADP + D-hexose 6-phosphate + H(+)"
            ],
            [
                "A0A8I5ZP97-1",
                "protein_xref_rhea",
                "10596",
                "ATP + L-tyrosyl-[protein] = ADP + H(+) + O-phospho-L-tyrosyl-[protein]"
            ],
            [
                "A0A8I5ZP97-1",
                "protein_xref_rhea",
                "17989",
                "ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]"
            ],
            [
                "A0A8I5ZP97-1",
                "protein_xref_rhea",
                "46608",
                "ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]"
            ],
            [
                "D4ADE5-1",
                "protein_xref_rhea",
                "51736",
                "L-lysyl-[protein] + S-adenosyl-L-methionine = H(+) + N(6)-methyl-L-lysyl-[protein] + S-adenosyl-L-homocysteine"
            ],
            [
                "D4ADE5-1",
                "protein_xref_rhea",
                "60264",
                "L-lysyl(4)-[histone H3] + S-adenosyl-L-methionine = H(+) + N(6)-methyl-L-lysyl(4)-[histone H3] + S-adenosyl-L-homocysteine"
            ],
            [
                "F1MAB7-1",
                "protein_xref_rhea",
                "10272",
                "a 1,2-diacyl-sn-glycerol + ATP = a 1,2-diacyl-sn-glycero-3-phosphate + ADP + H(+)"
            ],
            [
                "F1MAB7-1",
                "protein_xref_rhea",
                "40327",
                "1,2-di-(9Z-octadecenoyl)-sn-glycerol + ATP = 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate + ADP + H(+)"
            ],
            [
                "F1MAB7-1",
                "protein_xref_rhea",
                "40323",
                "1-octadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycerol + ATP = 1-octadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphate + ADP + H(+)"
            ],
            [
                "P00884-1",
                "protein_xref_rhea",
                "14729",
                "beta-D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + dihydroxyacetone phosphate"
            ],
            [
                "F1M0N1-1",
                "protein_xref_rhea",
                "10596",
                "ATP + L-tyrosyl-[protein] = ADP + H(+) + O-phospho-L-tyrosyl-[protein]"
            ],
            [
                "P97609-1",
                "protein_xref_rhea",
                "60188",
                "2 2-oxoglutarate + N(6),N(6)-dimethyl-L-lysyl(9)-[histone H3] + 2 O2 = 2 CO2 + 2 formaldehyde + L-lysyl(9)-[histone H3] + 2 succinate"
            ],
            [
                "P23347-1",
                "protein_xref_rhea",
                "72363",
                "chloride(out) + hydrogencarbonate(in) = chloride(in) + hydrogencarbonate(out)"
            ],
            [
                "Q6AXW7-1",
                "protein_xref_rhea",
                "20629",
                "H2O + O-phospho-L-seryl-[protein] = L-seryl-[protein] + phosphate"
            ],
            [
                "Q6AXW7-1",
                "protein_xref_rhea",
                "47004",
                "H2O + O-phospho-L-threonyl-[protein] = L-threonyl-[protein] + phosphate"
            ],
            [
                "A0A8I6GKT2-1",
                "protein_xref_rhea",
                "17973",
                "diphosphate + IMP = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "15801",
                "a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "38779",
                "1-hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + H2O = (9Z)-octadecenoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "40431",
                "1-hexadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphoethanolamine + H2O = (5Z,8Z,11Z,14Z)-eicosatetraenoate + 1-hexadecanoyl-sn-glycero-3-phosphoethanolamine + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "40811",
                "1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphocholine + H2O = (9Z,12Z)-octadecadienoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "40815",
                "1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphoethanolamine + H2O = (9Z,12Z)-octadecadienoate + 1-hexadecanoyl-sn-glycero-3-phosphoethanolamine + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "40919",
                "1-hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-sn-glycerol) + H2O = (9Z)-octadecenoate + 1-hexadecanoyl-sn-glycero-3-phospho-(1'-sn-glycerol) + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "41223",
                "1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + H2O = 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+) + hexadecanoate"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "44524",
                "1-hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phospho-glycerol + H2O = (9Z)-octadecenoate + 1-hexadecanoyl-sn-glycero-3-phospho-glycerol + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "45424",
                "H2O + N-hexadecanoyl-1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine = (9Z)-octadecenoate + H(+) + N-hexadecanoyl-1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "40911",
                "1-hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = (9Z)-octadecenoate + 1-hexadecanoyl-sn-glycero-3-phosphoethanolamine + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "41231",
                "1-hexadecanoyl-2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphocholine + H2O = (4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "44604",
                "a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + H2O = a 1-acyl-sn-glycero-3-phosphoethanolamine + a fatty acid + H(+)"
            ],
            [
                "P14423-1",
                "protein_xref_rhea",
                "45472",
                "1,2-dihexadecanoyl-sn-glycero-3-phospho-(1'-sn-glycerol) + H2O = 1-hexadecanoyl-sn-glycero-3-phospho-(1'-sn-glycerol) + H(+) + hexadecanoate"
            ],
            [
                "F1LS86-1",
                "protein_xref_rhea",
                "11060",
                "ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile)"
            ],
            [
                "A0A8I6A416-1",
                "protein_xref_rhea",
                "14653",
                "a nucleoside 3',5'-cyclic phosphate + H2O = a nucleoside 5'-phosphate + H(+)"
            ],
            [
                "A0A8I6A416-1",
                "protein_xref_rhea",
                "16957",
                "3',5'-cyclic GMP + H2O = GMP + H(+)"
            ],
            [
                "A0A8I6A416-1",
                "protein_xref_rhea",
                "25277",
                "3',5'-cyclic AMP + H2O = AMP + H(+)"
            ],
            [
                "F1LZH3-1",
                "protein_xref_rhea",
                "60292",
                "L-lysyl(27)-[histone H3] + 3 S-adenosyl-L-methionine = 3 H(+) + N(6),N(6),N(6)-trimethyl-L-lysyl(27)-[histone H3] + 3 S-adenosyl-L-homocysteine"
            ],
            [
                "P18298-1",
                "protein_xref_rhea",
                "21080",
                "ATP + H2O + L-methionine = diphosphate + phosphate + S-adenosyl-L-methionine"
            ]
        ]
    },
    "readme": "Name\n   - Rat UniProtKB Xref Rhea\n\nVersion\n   - v-2.1.1\n\nCreated on\n  - 2021-10-15T06:39:59.122715\n\nModified on\n   - 2022-09-26T09:08:12.587959\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat UniProtKB Xref Rhea contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to Rhea database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - Rhea\n\nDescription Domain\n   Keywords\n   - reactions\n   - Rhea\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Rhea database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_xref_rhea.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_rhea.csv\n      Name: rat_protein_xref_rhea.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_rhea.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"2767\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"3798\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"3798\"",
    "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_xref_rhea.csv"
}