{ "bcoid": "GLY_000590", "title": "Mouse Reaction Participants (Reactome)", "description": "", "filename": "mouse_protein_participants_reactome.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tags": [ "Reaction Participants (Reactome)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "R-MMU-681374...", "R-ALL-679949..." ], [ "R-MMU-681374...", "R-ALL-679949..." ] ], "headers": [ "reaction_id...", "participant_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "reaction_id" }, { "type": "string", "label": "participant_id" }, { "type": "string", "label": "participant_name" }, { "type": "string", "label": "role" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_type" } ], [ "R-MMU-6813749", "R-ALL-6799497", "DGA [cytosol]", "output", "32398", "ChEBI" ], [ "R-MMU-6813749", "R-ALL-6799497", "DGA [cytosol]", "output", "HMDB0000139", "HMDB Metabolite" ], [ "R-MMU-6813749", "R-ALL-6799497", "DGA [cytosol]", "output", "000000895140", "ZINC" ], [ "R-MMU-6813749", "R-ALL-6799497", "DGA [cytosol]", "output", "C00258", "COMPOUND" ], [ "R-MMU-5619419", "R-MMU-5619381", "Hoxd3 gene [nucleoplasm]", "input", "ENSMUSG00000079277", "ENSEMBL" ], [ "R-MMU-6797630", "R-ALL-417891", "LPA [extracellular region]", "input", "000014953257", "ZINC" ], [ "R-MMU-6797630", "R-ALL-417891", "LPA [extracellular region]", "input", "52288", "ChEBI" ], [ "R-MMU-6797630", "R-ALL-417891", "LPA [extracellular region]", "input", "HMDB0242470", "HMDB Metabolite" ], [ "R-MMU-6797630", "R-ALL-417891", "LPA [extracellular region]", "input", "000014953268", "ZINC" ], [ "R-MMU-6797630", "R-ALL-109277", "Pi [extracellular region]", "output", "C00009", "COMPOUND" ], [ "R-MMU-6797630", "R-ALL-109277", "Pi [extracellular region]", "output", "43474", "ChEBI" ], [ "R-MMU-6797630", "R-ALL-6797635", "1,2-DAG [extracellular region]", "output", "17815", "ChEBI" ], [ "R-MMU-6813740", "R-ALL-6813734", "GroPIns [cytosol]", "input", "000100067589", "ZINC" ], [ "R-MMU-6813740", "R-ALL-6813734", "GroPIns [cytosol]", "input", "58444", "ChEBI" ], [ "R-MMU-5619418", "R-MMU-5619355", "Hoxa2 gene [nucleoplasm]", "input", "ENSMUSG00000014704", "ENSEMBL" ], [ "R-MMU-5619418", "R-MMU-5619377", "Hoxa2 mRNA [cytosol]", "output", "ENSMUST00000014848", "ENSEMBL" ], [ "R-MMU-9748983", "R-ALL-9748982", "6MeMP [cytosol]", "output", "28279", "ChEBI" ], [ "R-MMU-9748983", "R-ALL-9748982", "6MeMP [cytosol]", "output", "HMDB0060412", "HMDB Metabolite" ], [ "R-MMU-9748983", "R-ALL-9748982", "6MeMP [cytosol]", "output", "000018113502", "ZINC" ], [ "R-MMU-9748983", "R-ALL-9748982", "6MeMP [cytosol]", "output", "8144367", "PubChem Substance" ], [ "R-MMU-561253", "R-ALL-373863", "LACT [extracellular region]", "output", "C00186", "COMPOUND" ], [ "R-MMU-561253", "R-ALL-373863", "LACT [extracellular region]", "output", "422", "ChEBI" ], [ "R-MMU-561253", "R-ALL-373863", "LACT [extracellular region]", "output", "8145829", "PubChem Substance" ], [ "R-MMU-561253", "R-ALL-373863", "LACT [extracellular region]", "output", "000004658560", "ZINC" ], [ "R-MMU-561253", "R-ALL-373863", "LACT [extracellular region]", "output", "HMDB0000190", "HMDB Metabolite" ], [ "R-MMU-561253", "R-ALL-30034", "urate [cytosol]", "output", "C00366", "COMPOUND" ], [ "R-MMU-561253", "R-ALL-30034", "urate [cytosol]", "output", "17775", "ChEBI" ], [ "R-MMU-561253", "R-ALL-30034", "urate [cytosol]", "output", "000002041003", "ZINC" ], [ "R-MMU-561253", "R-ALL-30034", "urate [cytosol]", "output", "HMDB0000289", "HMDB Metabolite" ], [ "R-MMU-561253", "R-ALL-30034", "urate [cytosol]", "output", "8144012", "PubChem Substance" ], [ "R-MMU-964962", "R-ALL-965053", "PDX [cytosol]", "input", "C00314", "COMPOUND" ], [ "R-MMU-964962", "R-ALL-965053", "PDX [cytosol]", "input", "HMDB0000239", "HMDB Metabolite" ], [ "R-MMU-964962", "R-ALL-965053", "PDX [cytosol]", "input", "16709", "ChEBI" ], [ "R-MMU-964962", "R-ALL-965053", "PDX [cytosol]", "input", "000000049154", "ZINC" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "ENSMUSP00000130759", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "NP_033447.2", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "XP_011237355.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "ENSMUST00000028234", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "XP_011237353.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "ENSMUSP00000108687", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "XP_011237356.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "ENSMUSG00000026875", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "P39428", "UniProt" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "ENSMUST00000172159", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "XP_017172618.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "XP_011237354.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "P39428", "PRO" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "101836", "MGI" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "NP_001313530.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "ENSMUSP00000028234", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "XP_011237352.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634163", "Traf1 [cytosol]", "input", "ENSMUST00000113064", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "P39428", "UniProt" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "XP_011237352.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "NP_033447.2", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "XP_017172618.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "XP_011237356.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "NP_001313530.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "ENSMUST00000028234", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "P39428", "PRO" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "ENSMUSP00000108687", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "ENSMUST00000113064", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "ENSMUSP00000130759", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "ENSMUST00000172159", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "ENSMUSG00000026875", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "ENSMUSP00000028234", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "XP_011237355.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "XP_011237354.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "XP_011237353.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634199", "Traf1 [cytosol]", "output", "101836", "MGI" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "P39428", "UniProt" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "XP_011237352.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "NP_033447.2", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "XP_017172618.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "XP_011237356.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "NP_001313530.1", "RefSeq" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "ENSMUST00000028234", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "P39428", "PRO" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "ENSMUSP00000108687", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "ENSMUST00000113064", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "ENSMUSP00000130759", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "ENSMUST00000172159", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "ENSMUSG00000026875", "Ensembl" ], [ "R-MMU-5634228", "R-MMU-5634204", "Traf1 [cytosol]", "output", "ENSMUSP00000028234", "Ensembl" ] ] }, "readme": "Name\n - Mouse Reaction Participants (Reactome)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2021-10-07T14:15:48.605914\n\nModified on\n - 2022-09-26T09:08:12.733442\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: database_accession.tsv\n URI: /data/shared/glyds/downloads/chebi/2023_05_19/database_accession.tsv\n Name: uniprot-proteome-mus-musculus.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_participants_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_participants_reactome.csv\n Name: mouse_protein_participants_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_participants_reactome.stat.csv\n\nFields\n Name: \"reaction_id\"\n Description: \"The identifier assigned to a reaction in Reactome database\"\n Unique Values: \"7060\"\n Name: \"participant_id\"\n Description: \"\"\n Unique Values: \"7025\"\n Name: \"participant_name\"\n Description: \"\"\n Unique Values: \"3802\"\n Name: \"role\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"15070\"\n Name: \"xref_type\"\n Description: \"\"\n Unique Values: \"45\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/mouse_protein_participants_reactome.csv" }