{ "bcoid": "GLY_000561", "title": "Mouse Proteoform Glycosylation Citations (UniProtKB)", "description": "", "filename": "mouse_proteoform_citations_glycosylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "status": [ "Reviewed" ] }, "minitable": { "content": [ [ "Q9ES57-1...", "Structures o..." ], [ "P28665-1...", "Enhanced ana..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "Q9ES57-1", "Structures of CD200/CD200 receptor family and implications for topology, regulation, and evolution.", "Structure (London, England : 1993)", "2013 May 7", "Hatherley D, Lea SM, Johnson S, Barclay AN", "protein_xref_pubmed", "23602662", "protein_xref_uniprotkb_gly", "Q9ES57", "" ], [ "P28665-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "P28665", "" ], [ "P06802-1", "Crystal structure of Enpp1, an extracellular glycoprotein involved in bone mineralization and insulin signaling.", "Proceedings of the National Academy of Sciences of the United States of America", "2012 Oct 16", "Kato K, Nishimasu H, Okudaira S, Mihara E, Ishitani R, Takagi J, Aoki J, Nureki O", "protein_xref_pubmed", "23027977", "protein_xref_uniprotkb_gly", "P06802", "" ], [ "P06802-1", "Structure of NPP1, an ectonucleotide pyrophosphatase/phosphodiesterase involved in tissue calcification.", "Structure (London, England : 1993)", "2012 Nov 7", "Jansen S, Perrakis A, Ulens C, Winkler C, Andries M, Joosten RP, Van Acker M, Luyten FP, Moolenaar WH, Bollen M", "protein_xref_pubmed", "23041369", "protein_xref_uniprotkb_gly", "P06802", "" ], [ "O70458-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "O70458", "" ], [ "P52800-1", "Crystal structure of an ephrin ectodomain.", "Developmental cell", "2001 Jul", "Toth J, Cutforth T, Gelinas AD, Bethoney KA, Bard J, Harrison CJ", "protein_xref_pubmed", "11703926", "protein_xref_uniprotkb_gly", "P52800", "" ], [ "Q62192-1", "Crystal structures of mouse and human RP105/MD-1 complexes reveal unique dimer organization of the toll-like receptor family.", "Journal of molecular biology", "2011 Nov 4", "Ohto U, Miyake K, Shimizu T", "protein_xref_pubmed", "21959264", "protein_xref_uniprotkb_gly", "Q62192", "" ], [ "Q9QUN7-1", "Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide.", "Cell", "2007 Sep 21", "Jin MS, Kim SE, Heo JY, Lee ME, Kim HM, Paik SG, Lee H, Lee JO", "protein_xref_pubmed", "17889651", "protein_xref_uniprotkb_gly", "Q9QUN7", "" ], [ "Q9QUN7-1", "Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer.", "Immunity", "2009 Dec 18", "Kang JY, Nan X, Jin MS, Youn SJ, Ryu YH, Mah S, Han SH, Lee H, Paik SG, Lee JO", "protein_xref_pubmed", "19931471", "protein_xref_uniprotkb_gly", "Q9QUN7", "" ], [ "Q9QUN7-1", "Structural basis for inhibition of TLR2 by staphylococcal superantigen-like protein 3 (SSL3).", "Proceedings of the National Academy of Sciences of the United States of America", "2015 Sep 1", "Koymans KJ, Feitsma LJ, Brondijk TH, Aerts PC, Lukkien E, Lossl P, van Kessel KP, de Haas CJ, van Strijp JA, Huizinga EG", "protein_xref_pubmed", "26283364", "protein_xref_uniprotkb_gly", "Q9QUN7", "" ], [ "P97290-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "P97290", "" ], [ "P97290-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "P97290", "" ], [ "Q6DYE8-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q6DYE8", "" ], [ "Q60751-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q60751", "" ], [ "P40237-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "P40237", "" ], [ "A6X935-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "A6X935", "" ], [ "A6X935-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "A6X935", "" ], [ "Q61838-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "Q61838", "" ], [ "P19221-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "P19221", "" ], [ "O35598-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "O35598", "" ], [ "P21995-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P21995", "" ], [ "P39061-3", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P39061", "" ], [ "P11499-1", "Mapping of O-GlcNAc sites of 20 S proteasome subunits and Hsp90 by a novel biotin-cystamine tag.", "Molecular & cellular proteomics : MCP", "2012 Aug", "Overath T, Kuckelkorn U, Henklein P, Strehl B, Bonar D, Kloss A, Siele D, Kloetzel PM, Janek K", "protein_xref_pubmed", "22556278", "protein_xref_uniprotkb_gly", "P11499", "" ], [ "P59384-1", "Biosynthesis and expression of a disintegrin-like and metalloproteinase domain with thrombospondin-1 repeats-15: a novel versican-cleaving proteoglycanase.", "The Journal of biological chemistry", "2013 Dec 27", "Dancevic CM, Fraser FW, Smith AD, Stupka N, Ward AC, McCulloch DR", "protein_xref_pubmed", "24220035", "protein_xref_uniprotkb_gly", "P59384", "" ], [ "Q8C0X7-1", "Structure of a mammalian sperm cation channel complex.", "Nature", "2021 Jul", "Lin S, Ke M, Zhang Y, Yan Z, Wu J", "protein_xref_pubmed", "34225353", "protein_xref_uniprotkb_gly", "Q8C0X7", "" ], [ "Q3TCN2-1", "Molecular characterization of the hypothetical 66.3-kDa protein in mouse: lysosomal targeting, glycosylation, processing and tissue distribution.", "FEBS letters", "2006 Oct 16", "Deuschl F, Kollmann K, von Figura K, Lubke T", "protein_xref_pubmed", "17007843", "protein_xref_uniprotkb_gly", "Q3TCN2", "" ], [ "Q3TCN2-1", "De novo sulfur SAD phasing of the lysosomal 66.3 kDa protein from mouse.", "Acta crystallographica. Section D, Biological crystallography", "2009 Mar", "Lakomek K, Dickmanns A, Mueller U, Kollmann K, Deuschl F, Berndt A, Lubke T, Ficner R", "protein_xref_pubmed", "19237744", "protein_xref_uniprotkb_gly", "Q3TCN2", "" ], [ "Q6PEM8-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q6PEM8", "" ], [ "Q64455-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q64455", "" ], [ "P56695-1", "Endoplasmic reticulum stress and N-glycosylation modulate expression of WFS1 protein.", "Biochemical and biophysical research communications", "2004 Dec 3", "Yamaguchi S, Ishihara H, Tamura A, Yamada T, Takahashi R, Takei D, Katagiri H, Oka Y", "protein_xref_pubmed", "15522226", "protein_xref_uniprotkb_gly", "P56695", "" ], [ "Q69Z26-1", "The protein tyrosine phosphatases PTPRZ and PTPRG bind to distinct members of the contactin family of neural recognition molecules.", "Proceedings of the National Academy of Sciences of the United States of America", "2010 Feb 9", "Bouyain S, Watkins DJ", "protein_xref_pubmed", "20133774", "protein_xref_uniprotkb_gly", "Q69Z26", "" ], [ "Q07113-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q07113", "" ], [ "Q09163-1", "Glycosylation analysis and protein structure determination of murine fetal antigen 1 (mFA1)--the circulating gene product of the delta-like protein (dlk), preadipocyte factor 1 (Pref-1) and stromal-cell-derived protein 1 (SCP-1) cDNAs.", "European journal of biochemistry", "1997 Mar 1", "Krogh TN, Bachmann E, Teisner B, Skjodt K, Hojrup P", "protein_xref_pubmed", "9118998", "protein_xref_uniprotkb_gly", "Q09163", "" ], [ "Q60841-1", "Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 Jun 12", "Yasui N, Nogi T, Kitao T, Nakano Y, Hattori M, Takagi J", "protein_xref_pubmed", "17548821", "protein_xref_uniprotkb_gly", "Q60841", "" ], [ "Q99J21-1", "Cryo-EM structures of the mammalian endo-lysosomal TRPML1 channel elucidate the combined regulation mechanism.", "Protein & cell", "2017 Nov", "Zhang S, Li N, Zeng W, Gao N, Yang M", "protein_xref_pubmed", "28936784", "protein_xref_uniprotkb_gly", "Q99J21", "" ], [ "Q99J21-1", "Structure of mammalian endolysosomal TRPML1 channel in nanodiscs.", "Nature", "2017 Oct 19", "Chen Q, She J, Zeng W, Guo J, Xu H, Bai XC, Jiang Y", "protein_xref_pubmed", "29019981", "protein_xref_uniprotkb_gly", "Q99J21", "" ], [ "P20239-1", "Structural characterization of native mouse zona pellucida proteins using mass spectrometry.", "The Journal of biological chemistry", "2003 Sep 5", "Boja ES, Hoodbhoy T, Fales HM, Dean J", "protein_xref_pubmed", "12799386", "protein_xref_uniprotkb_gly", "P20239", "" ], [ "O88737-1", "O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry.", "Molecular & cellular proteomics : MCP", "2006 May", "Vosseller K, Trinidad JC, Chalkley RJ, Specht CG, Thalhammer A, Lynn AJ, Snedecor JO, Guan S, Medzihradszky KF, Maltby DA, Schoepfer R, Burlingame AL", "protein_xref_pubmed", "16452088", "protein_xref_uniprotkb_gly", "O88737", "" ], [ "Q80UL9-1", "The molecular interaction of CAR and JAML recruits the central cell signal transducer PI3K.", "Science (New York, N.Y.)", "2010 Sep 3", "Verdino P, Witherden DA, Havran WL, Wilson IA", "protein_xref_pubmed", "20813955", "protein_xref_uniprotkb_gly", "Q80UL9", "" ], [ "Q8BKG3-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8BKG3", "" ], [ "E9Q9F6-1", "Structure of a mammalian sperm cation channel complex.", "Nature", "2021 Jul", "Lin S, Ke M, Zhang Y, Yan Z, Wu J", "protein_xref_pubmed", "34225353", "protein_xref_uniprotkb_gly", "E9Q9F6", "" ], [ "Q01339-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "Q01339", "" ], [ "P19137-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P19137", "" ], [ "Q61001-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q61001", "" ], [ "Q9Z1M0-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9Z1M0", "" ], [ "Q9JLB4-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9JLB4", "" ], [ "P04441-1", "Identification of the glycosaminoglycan-attachment site of mouse invariant-chain proteoglycan core protein by site-directed mutagenesis.", "Proceedings of the National Academy of Sciences of the United States of America", "1988 Mar", "Miller J, Hatch JA, Simonis S, Cullen SE", "protein_xref_pubmed", "3422739", "protein_xref_uniprotkb_gly", "P04441", "" ], [ "O09126-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "O09126", "" ], [ "Q8VC69-1", "Role of glycosylation in the organic anion transporter OAT1.", "The Journal of biological chemistry", "2004 Apr 9", "Tanaka K, Xu W, Zhou F, You G", "protein_xref_pubmed", "14749323", "protein_xref_uniprotkb_gly", "Q8VC69", "" ], [ "P05532-1", "Structural basis for stem cell factor-KIT signaling and activation of class III receptor tyrosine kinases.", "The EMBO journal", "2007 Feb 7", "Liu H, Chen X, Focia PJ, He X", "protein_xref_pubmed", "17255936", "protein_xref_uniprotkb_gly", "P05532", "" ], [ "Q9QWK4-1", "Modification of N-glycosylation modulates the secretion and lipolytic function of apoptosis inhibitor of macrophage (AIM).", "FEBS letters", "2012 Oct 19", "Mori M, Kimura H, Iwamura Y, Arai S, Miyazaki T", "protein_xref_pubmed", "23236605", "protein_xref_uniprotkb_gly", "Q9QWK4", "" ], [ "O70362-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "O70362", "" ], [ "P43406-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "P43406", "" ], [ "Q9R0E1-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9R0E1", "" ], [ "Q8BGN3-1", "Structure and biological function of ENPP6, a choline-specific glycerophosphodiester-phosphodiesterase.", "Scientific reports", "2016 Feb 18", "Morita J, Kano K, Kato K, Takita H, Sakagami H, Yamamoto Y, Mihara E, Ueda H, Sato T, Tokuyama H, Arai H, Asou H, Takagi J, Ishitani R, Nishimasu H, Nureki O, Aoki J", "protein_xref_pubmed", "26888014", "protein_xref_uniprotkb_gly", "Q8BGN3", "" ], [ "O35298-1", "Crystal structure of the mammalian lipopolysaccharide detoxifier.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 Jan 30", "Gorelik A, Illes K, Nagar B", "protein_xref_pubmed", "29343645", "protein_xref_uniprotkb_gly", "O35298", "" ], [ "Q04519-1", "Crystal structure of mammalian acid sphingomyelinase.", "Nature communications", "2016 Jul 20", "Gorelik A, Illes K, Heinz LX, Superti-Furga G, Nagar B", "protein_xref_pubmed", "27435900", "protein_xref_uniprotkb_gly", "Q04519", "" ], [ "Q9Z0L0-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9Z0L0", "" ], [ "Q3TDQ1-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q3TDQ1", "" ], [ "Q62313-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q62313", "" ], [ "P33587-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "P33587", "" ], [ "P41233-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P41233", "" ], [ "Q8R2Y2-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8R2Y2", "" ], [ "A2ARV4-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "A2ARV4", "" ], [ "P10493-1", "Structure and localization of O- and N-linked oligosaccharide chains on basement membrane protein nidogen.", "Matrix (Stuttgart, Germany)", "1993 May", "Fujiwara S, Shinkai H, Mann K, Timpl R", "protein_xref_pubmed", "8326911", "protein_xref_uniprotkb_gly", "P10493", "" ], [ "P22599-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "P22599", "" ], [ "Q9QUG3-1", "Doppel is an N-glycosylated, glycosylphosphatidylinositol-anchored protein. Expression in testis and ectopic production in the brains of Prnp(0/0) mice predisposed to Purkinje cell loss.", "The Journal of biological chemistry", "2000 Sep 1", "Silverman GL, Qin K, Moore RC, Yang Y, Mastrangelo P, Tremblay P, Prusiner SB, Cohen FE, Westaway D", "protein_xref_pubmed", "10842180", "protein_xref_uniprotkb_gly", "Q9QUG3", "" ], [ "P58242-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P58242", "" ], [ "P58242-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "P58242", "" ], [ "P58242-1", "Crystal Structure of the Acid Sphingomyelinase-like Phosphodiesterase SMPDL3B Provides Insights into Determinants of Substrate Specificity.", "The Journal of biological chemistry", "2016 Nov 11", "Gorelik A, Heinz LX, Illes K, Superti-Furga G, Nagar B", "protein_xref_pubmed", "27687724", "protein_xref_uniprotkb_gly", "P58242", "" ], [ "Q6S5C2-1", "Post-translational modifications of the gamma-subunit affect intracellular trafficking and complex assembly of GlcNAc-1-phosphotransferase.", "The Journal of biological chemistry", "2011 Feb 18", "Encarnacao M, Kollmann K, Trusch M, Braulke T, Pohl S", "protein_xref_pubmed", "21173149", "protein_xref_uniprotkb_gly", "Q6S5C2", "" ], [ "P45700-1", "Structure of mouse Golgi alpha-mannosidase IA reveals the molecular basis for substrate specificity among class 1 (family 47 glycosylhydrolase) alpha1,2-mannosidases.", "The Journal of biological chemistry", "2004 Jul 9", "Tempel W, Karaveg K, Liu ZJ, Rose J, Wang BC, Moremen KW", "protein_xref_pubmed", "15102839", "protein_xref_uniprotkb_gly", "P45700", "" ], [ "O35114-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "O35114", "" ], [ "P08553-1", "O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry.", "Molecular & cellular proteomics : MCP", "2006 May", "Vosseller K, Trinidad JC, Chalkley RJ, Specht CG, Thalhammer A, Lynn AJ, Snedecor JO, Guan S, Medzihradszky KF, Maltby DA, Schoepfer R, Burlingame AL", "protein_xref_pubmed", "16452088", "protein_xref_uniprotkb_gly", "P08553", "" ], [ "P49582-1", "NACHO Engages N-Glycosylation ER Chaperone Pathways for alpha7 Nicotinic Receptor Assembly.", "Cell reports", "2020 Aug 11", "Kweon HJ, Gu S, Witham E, Dhara M, Yu H, Mandon ED, Jawhari A, Bredt DS", "protein_xref_pubmed", "32783947", "protein_xref_uniprotkb_gly", "P49582", "" ], [ "P11276-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P11276", "" ], [ "P11276-1", "The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.", "Molecular & cellular proteomics : MCP", "2009 Nov", "Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B", "protein_xref_pubmed", "19656770", "protein_xref_uniprotkb_gly", "P11276", "" ], [ "P42703-1", "An unusual cytokine:Ig-domain interaction revealed in the crystal structure of leukemia inhibitory factor (LIF) in complex with the LIF receptor.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 Jul 31", "Huyton T, Zhang JG, Luo CS, Lou MZ, Hilton DJ, Nicola NA, Garrett TP", "protein_xref_pubmed", "17652170", "protein_xref_uniprotkb_gly", "P42703", "" ], [ "P42703-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "P42703", "" ], [ "P23953-1", "Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.", "Journal of proteome research", "2007 Mar", "Bernhard OK, Kapp EA, Simpson RJ", "protein_xref_pubmed", "17330941", "protein_xref_uniprotkb_gly", "P23953", "" ], [ "P23953-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "P23953", "" ], [ "Q9QUK6-1", "Crystal structure of the TLR4-MD-2 complex with bound endotoxin antagonist Eritoran.", "Cell", "2007 Sep 7", "Kim HM, Park BS, Kim JI, Kim SE, Lee J, Oh SC, Enkhbayar P, Matsushima N, Lee H, Yoo OJ, Lee JO", "protein_xref_pubmed", "17803912", "protein_xref_uniprotkb_gly", "Q9QUK6", "" ], [ "Q60590-1", "Proteome-wide characterization of N-glycosylation events by diagonal chromatography.", "Journal of proteome research", "2006 Sep", "Ghesquiere B, Van Damme J, Martens L, Vandekerckhove J, Gevaert K", "protein_xref_pubmed", "16944957", "protein_xref_uniprotkb_gly", "Q60590", "" ], [ "Q05769-1", "Structural insights into the stereochemistry of the cyclooxygenase reaction.", "Nature", "2000 May 4", "Kiefer JR, Pawlitz JL, Moreland KT, Stegeman RA, Hood WF, Gierse JK, Stevens AM, Goodwin DC, Rowlinson SW, Marnett LJ, Stallings WC, Kurumbail RG", "protein_xref_pubmed", "10811226", "protein_xref_uniprotkb_gly", "Q05769", "" ] ] }, "readme": "Name\n - Mouse Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2021-06-03T16:33:45.288361\n\nModified on\n - 2023-03-14T16:53:05.178Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_uniprotkb.csv\n Output Subdomain\n Name: mouse_proteoform_citations_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_citations_glycosylation_sites_uniprotkb.csv\n Name: mouse_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"493\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"209\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"71\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"198\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"209\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"209\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"496\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/mouse_proteoform_citations_glycosylation_sites_uniprotkb.csv" }