{ "bcoid": "GLY_000560", "title": "Human Proteoform Glycosylation Citations (UniProtKB)", "description": "", "filename": "human_proteoform_citations_glycosylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Proteoform" ], "tags": [ "Protein Citations UniProtKB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8NBL1-1...", "Structural b..." ], [ "P04921-1...", "N-terminal a..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "Q8NBL1-1", "Structural basis of Notch O-glucosylation and O-xylosylation by mammalian protein-O-glucosyltransferase 1 (POGLUT1).", "Nature communications", "2017 Aug 4", "Li Z, Fischer M, Satkunarajah M, Zhou D, Withers SG, Rini JM", "protein_xref_pubmed", "28775322", "protein_xref_uniprotkb_gly", "Q8NBL1", "" ], [ "P04921-1", "N-terminal amino acid sequence of sialoglycoprotein D (glycophorin C) from human erythrocyte membranes.", "European journal of biochemistry", "1982 Jun 15", "Dahr W, Beyreuther K, Kordowicz M, Kruger J", "protein_xref_pubmed", "7106126", "protein_xref_uniprotkb_gly", "P04921", "" ], [ "Q15910-1", "O-GlcNAcylation regulates EZH2 protein stability and function.", "Proceedings of the National Academy of Sciences of the United States of America", "2014 Jan 28", "Chu CS, Lo PW, Yeh YH, Hsu PH, Peng SH, Teng YC, Kang ML, Wong CH, Juan LJ", "protein_xref_pubmed", "24474760", "protein_xref_uniprotkb_gly", "Q15910", "" ], [ "Q95460-1", "Biochemical features of the MHC-related protein 1 consistent with an immunological function.", "Journal of immunology (Baltimore, Md. : 1950)", "2003 Jun 15", "Miley MJ, Truscott SM, Yu YY, Gilfillan S, Fremont DH, Hansen TH, Lybarger L", "protein_xref_pubmed", "12794138", "protein_xref_uniprotkb_gly", "Q95460", "" ], [ "Q5T6X5-1", "N-glycosylation and disulfide bonding affects GPRC6A receptor expression, function, and dimerization.", "FEBS letters", "2015 Feb 27", "Norskov-Lauritsen L, Jorgensen S, Brauner-Osborne H", "protein_xref_pubmed", "25617829", "protein_xref_uniprotkb_gly", "Q5T6X5", "" ], [ "P35442-1", "Structure of the calcium-rich signature domain of human thrombospondin-2.", "Nature structural & molecular biology", "2005 Oct", "Carlson CB, Bernstein DA, Annis DS, Misenheimer TM, Hannah BL, Mosher DF, Keck JL", "protein_xref_pubmed", "16186819", "protein_xref_uniprotkb_gly", "P35442", "" ], [ "O00469-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "O00469", "" ], [ "Q92954-1", "The O-glycomap of lubricin, a novel mucin responsible for joint lubrication, identified by site-specific glycopeptide analysis.", "Molecular & cellular proteomics : MCP", "2014 Dec", "Ali L, Flowers SA, Jin C, Bennet EP, Ekwall AK, Karlsson NG", "protein_xref_pubmed", "25187573", "protein_xref_uniprotkb_gly", "Q92954", "" ], [ "P10253-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P10253", "" ], [ "P10253-1", "Human lysosomal alpha-glucosidase: functional characterization of the glycosylation sites.", "The Biochemical journal", "1993 Feb 1", "Hermans MM, Wisselaar HA, Kroos MA, Oostra BA, Reuser AJ", "protein_xref_pubmed", "8435067", "protein_xref_uniprotkb_gly", "P10253", "" ], [ "P10253-1", "Structure of human lysosomal acid alpha-glucosidase-a guide for the treatment of Pompe disease.", "Nature communications", "2017 Oct 24", "Roig-Zamboni V, Cobucci-Ponzano B, Iacono R, Ferrara MC, Germany S, Bourne Y, Parenti G, Moracci M, Sulzenbacher G", "protein_xref_pubmed", "29061980", "protein_xref_uniprotkb_gly", "P10253", "" ], [ "P98088-1", "Dynamic interplay between catalytic and lectin domains of GalNAc-transferases modulates protein O-glycosylation.", "Nature communications", "2015 May 5", "Lira-Navarrete E, de Las Rivas M, Companon I, Pallares MC, Kong Y, Iglesias-Fernandez J, Bernardes GJ, Peregrina JM, Rovira C, Bernado P, Bruscolini P, Clausen H, Lostao A, Corzana F, Hurtado-Guerrero R", "protein_xref_pubmed", "25939779", "protein_xref_uniprotkb_gly", "P98088", "" ], [ "P06133-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P06133", "" ], [ "Q96DR5-1", "Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry.", "Journal of proteome research", "2006 Jun", "Ramachandran P, Boontheung P, Xie Y, Sondej M, Wong DT, Loo JA", "protein_xref_pubmed", "16740002", "protein_xref_uniprotkb_gly", "Q96DR5", "" ], [ "Q9UKX5-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "Q9UKX5", "" ], [ "P05164-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P05164", "" ], [ "P05164-1", "Glycosylation pattern of mature dimeric leukocyte and recombinant monomeric myeloperoxidase: glycosylation is required for optimal enzymatic activity.", "The Journal of biological chemistry", "2010 May 21", "Van Antwerpen P, Slomianny MC, Boudjeltia KZ, Delporte C, Faid V, Calay D, Rousseau A, Moguilevsky N, Raes M, Vanhamme L, Furtmuller PG, Obinger C, Vanhaeverbeek M, Neve J, Michalski JC", "protein_xref_pubmed", "20332087", "protein_xref_uniprotkb_gly", "P05164", "" ], [ "Q16363-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "Q16363", "" ], [ "P07686-1", "Complete analysis of the glycosylation and disulfide bond pattern of human beta-hexosaminidase B by MALDI-MS.", "Glycobiology", "2001 Jul", "Schuette CG, Weisgerber J, Sandhoff K", "protein_xref_pubmed", "11447134", "protein_xref_uniprotkb_gly", "P07686", "" ], [ "P07686-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P07686", "" ], [ "P07686-1", "Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry.", "Nature biotechnology", "2003 Jun", "Zhang H, Li XJ, Martin DB, Aebersold 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"protein_xref_pubmed", "14760718", "protein_xref_uniprotkb_gly", "P01023", "" ], [ "P01023-1", "Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.", "Journal of proteome research", "2005 Nov-Dec", "Liu T, Qian WJ, Gritsenko MA, Camp DG 2nd, Monroe ME, Moore RJ, Smith RD", "protein_xref_pubmed", "16335952", "protein_xref_uniprotkb_gly", "P01023", "" ], [ "P27701-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P27701", "" ], [ "P27701-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P27701", "" ], [ "P09603-1", "Structural analysis of proteoglycan macrophage colony-stimulating factor.", "The Journal of biological chemistry", "1994-08-05", "Kimura F, Suzu S, Nakamura Y, Wakimoto N, Kanatani Y, Yanai N, Nagata N, Motoyoshi K", "protein_xref_pubmed", "8051056", "protein_xref_uniprotkb_gly", "P09603", "" ], [ "Q9Y251-1", "Secretion of heparanase protein is regulated by glycosylation in human tumor cell lines.", "The Journal of biological chemistry", "2004 Jan 23", "Simizu S, Ishida K, Wierzba MK, Osada H", "protein_xref_pubmed", "14573609", "protein_xref_uniprotkb_gly", "Q9Y251", "" ], [ "Q02985-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "Q02985", "" ], [ "Q07075-1", "Structural insights into central hypertension regulation by human aminopeptidase A.", "The Journal of biological chemistry", "2013 Aug 30", "Yang Y, Liu C, Lin YL, Li F", "protein_xref_pubmed", "23888046", "protein_xref_uniprotkb_gly", "Q07075", "" ], [ "O15118-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "O15118", "" ], [ "O15118-1", "Structural Insights into the Niemann-Pick C1 (NPC1)-Mediated Cholesterol Transfer and Ebola Infection.", "Cell", "2016 Jun 2", "Gong X, Qian H, Zhou X, Wu J, Wan T, Cao P, Huang W, Zhao X, Wang X, Wang P, Shi Y, Gao GF, Zhou Q, Yan N", "protein_xref_pubmed", "27238017", "protein_xref_uniprotkb_gly", "O15118", "" ], [ "Q30154-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "Q30154", "" ], [ "P19634-1", "The Na+/H+ exchanger NHE-1 possesses N- and O-linked glycosylation restricted to the first N-terminal extracellular domain.", "Biochemistry", "1994 Aug 30", "Counillon L, Pouyssegur J, Reithmeier RA", "protein_xref_pubmed", "8068684", "protein_xref_uniprotkb_gly", "P19634", "" ], [ "Q9Y5C1-1", "Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.", "Journal of proteome research", "2005 Nov-Dec", "Liu T, Qian WJ, Gritsenko MA, Camp DG 2nd, Monroe ME, Moore RJ, Smith RD", "protein_xref_pubmed", "16335952", "protein_xref_uniprotkb_gly", "Q9Y5C1", "" ], [ "P05556-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "Journal of proteome research", "2009 Feb", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P05556", "" ], [ "Q9NY35-1", "Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.", "Nature biotechnology", "2009 Apr", "Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q9NY35", "" ] ] }, "readme": "Name\n - Human Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2021-06-03T16:32:02.053252\n\nModified on\n - 2023-03-14T16:52:07.896Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_uniprotkb.csv\n Name: human_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1237\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"963\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"147\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"847\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"961\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"963\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1237\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_uniprotkb.csv" }