{ "bcoid": "GLY_000483", "title": "Human Proteoform Citations (GlyConnect)", "description": "The Human Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...", "filename": "human_proteoform_citations_glycosylation_sites_glyconnect.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Proteoform" ], "tags": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "...", "Severe infan..." ], [ "...", "Severe infan..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "22", "G44748WB" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "22", "G30729YJ" ], [ "", "Fucosylated human milk oligosaccharides vary between individuals and over the course of lactation.", "Glycobiology", "2001 May", "Chaturvedi P, Warren CD, Altaye M, Morrow AL, Ruiz-Palacios G, Pickering LK, Newburg DS", "protein_xref_pubmed", "11425797", "glycan_xref_glyconnect", "25", "G23581QL" ], [ "", "Fucosylated human milk oligosaccharides vary between individuals and over the course of lactation.", "Glycobiology", "2001 May", "Chaturvedi P, Warren CD, Altaye M, Morrow AL, Ruiz-Palacios G, Pickering LK, Newburg DS", "protein_xref_pubmed", "11425797", "glycan_xref_glyconnect", "25", "G50540JU" ], [ "", "Comparison of oligosaccharides in milk specimens from humans and twelve other species.", "Advances in experimental medicine and biology", "2001", "Warren CD, Chaturvedi P, Newburg AR, Oftedal OT, Tilden CD, Newburg DS", "protein_xref_pubmed", "11787698", "glycan_xref_glyconnect", "25", "G23581QL" ], [ "", "Comparison of oligosaccharides in milk specimens from humans and twelve other species.", "Advances in experimental medicine and biology", "2001", "Warren CD, Chaturvedi P, Newburg AR, Oftedal OT, Tilden CD, Newburg DS", "protein_xref_pubmed", "11787698", "glycan_xref_glyconnect", "25", "G50540JU" ], [ "P19835-1", "The structure of N-linked oligosaccharides of human pancreatic bile-salt-dependent lipase.", "European journal of biochemistry", "1993 Sep 15", "Sugo T, Mas E, Abouakil N, Endo T, Escribano MJ, Kobata A, Lombardo D", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "G55373ZG" ], [ "P19835-1", "The structure of N-linked oligosaccharides of human pancreatic bile-salt-dependent lipase.", "European journal of biochemistry", "1993 Sep 15", "Sugo T, Mas E, Abouakil N, Endo T, Escribano MJ, Kobata A, Lombardo D", "protein_xref_pubmed", "8404898", "protein_xref_glyconnect", "74", "G44215PV" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "54", "G21290RB" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "70", "G72735IY" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "70", "G16828VN" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "89", "G82463GQ" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "89", "G91558YX" ], [ "", "Characterization of a novel type of chain-terminator Gal beta 1-6Gal beta 1-4)GlcNAc in an oligosaccharide related to N-glycosylated protein glycans isolated from GM1 the urine of patients with gangliosidosis.", "European journal of biochemistry", "1991 Jun 1", "Michalski JC, Lemoine J, Wieruszeski JM, Fournet B, Montreuil J, Strecker G", "protein_xref_pubmed", "1904026", "glycan_xref_glyconnect", "98", "G74900AO" ], [ "", "Characterization of a novel type of chain-terminator Gal beta 1-6Gal beta 1-4)GlcNAc in an oligosaccharide related to N-glycosylated protein glycans isolated from GM1 the urine of patients with gangliosidosis.", "European journal of biochemistry", "1991 Jun 1", "Michalski JC, Lemoine J, Wieruszeski JM, Fournet B, Montreuil J, Strecker G", "protein_xref_pubmed", "1904026", "glycan_xref_glyconnect", "98", "G23453IV" ], [ "P01588-1", "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "Biochemistry", "1988 Jul 26", "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "protein_xref_pubmed", "3179269", "protein_xref_glyconnect", "140", "G70894RY" ], [ "P01588-1", "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "Biochemistry", "1988 Jul 26", "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "protein_xref_pubmed", "3179269", "protein_xref_glyconnect", "140", "G51562OR" ], [ "P01588-1", "Comparative study of the asparagine-linked sugar chains of human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "The Journal of biological chemistry", "1988 Mar 15", "Takeuchi M, Takasaki S, Miyazaki H, Kato T, Hoshi S, Kochibe N, Kobata A", "protein_xref_pubmed", "3346214", "protein_xref_glyconnect", "140", "G70894RY" ], [ "P01588-1", "Comparative study of the asparagine-linked sugar chains of human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "The Journal of biological chemistry", "1988 Mar 15", "Takeuchi M, Takasaki S, Miyazaki H, Kato T, Hoshi S, Kochibe N, Kobata A", "protein_xref_pubmed", "3346214", "protein_xref_glyconnect", "140", "G51562OR" ], [ "P01588-1", "Biological and physicochemical characterization of recombinant human erythropoietins fractionated by Mono Q column chromatography and their modification with sialyltransferase.", "Glycoconjugate journal", "1996 Dec", "Morimoto K, Tsuda E, Said AA, Uchida E, Hatakeyama S, Ueda M, Hayakawa T", "protein_xref_pubmed", "8981093", "protein_xref_glyconnect", "140", "G70894RY" ], [ "P01588-1", "Biological and physicochemical characterization of recombinant human erythropoietins fractionated by Mono Q column chromatography and their modification with sialyltransferase.", "Glycoconjugate journal", "1996 Dec", "Morimoto K, Tsuda E, Said AA, Uchida E, Hatakeyama S, Ueda M, Hayakawa T", "protein_xref_pubmed", "8981093", "protein_xref_glyconnect", "140", "G51562OR" ], [ "P10646-1", "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "Biochemistry", "1996 May 21", "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "protein_xref_pubmed", "8639592", "protein_xref_glyconnect", "602", "G70894RY" ], [ "P10646-1", "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "Biochemistry", "1996 May 21", "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "protein_xref_pubmed", "8639592", "protein_xref_glyconnect", "602", "G51562OR" ], [ "P17050-1", "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "Glycobiology", "2000 Mar", "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "G14669DU" ], [ "P17050-1", "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "Glycobiology", "2000 Mar", "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "protein_xref_pubmed", "10704524", "protein_xref_glyconnect", "45", "G22768VO" ], [ "P56817-1", "Characterization of the glycosylation profiles of Alzheimer's beta -secretase protein Asp-2 expressed in a variety of cell lines.", "The Journal of biological chemistry", "2001 May 18", "Charlwood J, Dingwall C, Matico R, Hussain I, Johanson K, Moore S, Powell DJ, Skehel JM, Ratcliffe S, Clarke B, Trill J, Sweitzer S, Camilleri P", "protein_xref_pubmed", "11278492", "protein_xref_glyconnect", "71", "G14669DU" ], [ "P56817-1", "Characterization of the glycosylation profiles of Alzheimer's beta -secretase protein Asp-2 expressed in a variety of cell lines.", "The Journal of biological chemistry", "2001 May 18", "Charlwood J, Dingwall C, Matico R, Hussain I, Johanson K, Moore S, Powell DJ, Skehel JM, Ratcliffe S, Clarke B, Trill J, Sweitzer S, Camilleri P", "protein_xref_pubmed", "11278492", "protein_xref_glyconnect", "71", "G22768VO" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G94854LT" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G74038AG" ], [ "", "Urinary oligosaccharides of fucosidosis. Evidence of the occurrence of X-antigenic determinant in serum-type sugar chains of glycoproteins.", "Journal of biochemistry", "1978 Oct", "Nishigaki M, Yamashita K, Matsuda I, Arashima S, Kobata A", "protein_xref_pubmed", "81832", "glycan_xref_glyconnect", "172", "G40544US" ], [ "", "Urinary oligosaccharides of fucosidosis. Evidence of the occurrence of X-antigenic determinant in serum-type sugar chains of glycoproteins.", "Journal of biochemistry", "1978 Oct", "Nishigaki M, Yamashita K, Matsuda I, Arashima S, Kobata A", "protein_xref_pubmed", "81832", "glycan_xref_glyconnect", "172", "G74724QE" ], [ "P14780-1", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "protein_xref_glyconnect", "6", "G81541IU" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "189", "G62946XF" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "189", "G69073PY" ], [ "P04275-1", "Structures of the asparagine-linked oligosaccharide chains of human von Willebrand factor. Occurrence of blood group A, B, and H(O) structures.", "The Journal of biological chemistry", "1992 May 5", "Matsui T, Titani K, Mizuochi T", "protein_xref_pubmed", "1577715", "protein_xref_glyconnect", "627", "G47175EF" ], [ "P04275-1", "Structures of the asparagine-linked oligosaccharide chains of human von Willebrand factor. Occurrence of blood group A, B, and H(O) structures.", "The Journal of biological chemistry", "1992 May 5", "Matsui T, Titani K, Mizuochi T", "protein_xref_pubmed", "1577715", "protein_xref_glyconnect", "627", "G44215PV" ], [ "", "Systematic review of the concentrations of oligosaccharides in human milk.", "Nutrition reviews", "2017 Nov 1", "Thurl S, Munzert M, Boehm G, Matthews C, Stahl B", "protein_xref_pubmed", "29053807", "glycan_xref_glyconnect", "212", "G54021WX" ], [ "", "Systematic review of the concentrations of oligosaccharides in human milk.", "Nutrition reviews", "2017 Nov 1", "Thurl S, Munzert M, Boehm G, Matthews C, Stahl B", "protein_xref_pubmed", "29053807", "glycan_xref_glyconnect", "212", "G66538GV" ], [ "", "Creating a Mass Spectral Reference Library for Oligosaccharides in Human Milk.", "Analytical chemistry", "2018 Aug 7", "Remoroza CA, Mak TD, De Leoz MLA, Mirokhin YA, Stein SE", "protein_xref_pubmed", "29969231", "glycan_xref_glyconnect", "212", "G54021WX" ], [ "", "Creating a Mass Spectral Reference Library for Oligosaccharides in Human Milk.", "Analytical chemistry", "2018 Aug 7", "Remoroza CA, Mak TD, De Leoz MLA, Mirokhin YA, Stein SE", "protein_xref_pubmed", "29969231", "glycan_xref_glyconnect", "212", "G66538GV" ], [ "", "Development of an annotated library of neutral human milk oligosaccharides.", "Journal of proteome research", "2010 Aug 6", "Wu S, Tao N, German JB, Grimm R, Lebrilla CB", "protein_xref_pubmed", "20578730", "glycan_xref_glyconnect", "212", "G54021WX" ], [ "", "Development of an annotated library of neutral human milk oligosaccharides.", "Journal of proteome research", "2010 Aug 6", "Wu S, Tao N, German JB, Grimm R, Lebrilla CB", "protein_xref_pubmed", "20578730", "glycan_xref_glyconnect", "212", "G66538GV" ], [ "", "Synthesis of asymmetrical multiantennary human milk oligosaccharides.", "Proceedings of the National Academy of Sciences of the United States of America", "2017 Jul 3", "Prudden AR, Liu L, Capicciotti CJ, Wolfert MA, Wang S, Gao Z, Meng L, Moremen KW, Boons GJ", "protein_xref_pubmed", "28630345", "glycan_xref_glyconnect", "212", "G54021WX" ], [ "", "Synthesis of asymmetrical multiantennary human milk oligosaccharides.", "Proceedings of the National Academy of Sciences of the United States of America", "2017 Jul 3", "Prudden AR, Liu L, Capicciotti CJ, Wolfert MA, Wang S, Gao Z, Meng L, Moremen KW, Boons GJ", "protein_xref_pubmed", "28630345", "glycan_xref_glyconnect", "212", "G66538GV" ], [ "", "Human Milk Oligosaccharides (HMOS): Structure, Function, and Enzyme-Catalyzed Synthesis.", "Advances in carbohydrate chemistry and biochemistry", "2015", "Chen X", "protein_xref_pubmed", "26613816", "glycan_xref_glyconnect", "212", "G54021WX" ], [ "", "Human Milk Oligosaccharides (HMOS): Structure, Function, and Enzyme-Catalyzed Synthesis.", "Advances in carbohydrate chemistry and biochemistry", "2015", "Chen X", "protein_xref_pubmed", "26613816", "glycan_xref_glyconnect", "212", "G66538GV" ], [ "", "A comparative study of sialyloligosaccharides isolated from sialidosis and galactosialidosis urine.", "Journal of inherited metabolic disease", "1991", "Van Pelt J, Kamerling JP, Bakker HD, Vliegenthart JF", "protein_xref_pubmed", "1779619", "glycan_xref_glyconnect", "213", "G15531AF" ], [ "", "A comparative study of sialyloligosaccharides isolated from sialidosis and galactosialidosis urine.", "Journal of inherited metabolic disease", "1991", "Van Pelt J, Kamerling JP, Bakker HD, Vliegenthart JF", "protein_xref_pubmed", "1779619", "glycan_xref_glyconnect", "213", "G02622IU" ], [ "", "Characterization and analysis of branched-chain N-acetylglucosaminyl oligosaccharides accumulating in Sandhoff disease tissue. Evidence that biantennary bisected oligosaccharide side chains of glycoproteins are abundant substrates for lysosomes.", "The Journal of biological chemistry", "1985 May 25", "Warner TG, deKremer RD, Sjoberg ER, Mock AK", "protein_xref_pubmed", "3997819", "glycan_xref_glyconnect", "247", "G60145BJ" ], [ "", "Characterization and analysis of branched-chain N-acetylglucosaminyl oligosaccharides accumulating in Sandhoff disease tissue. Evidence that biantennary bisected oligosaccharide side chains of glycoproteins are abundant substrates for lysosomes.", "The Journal of biological chemistry", "1985 May 25", "Warner TG, deKremer RD, Sjoberg ER, Mock AK", "protein_xref_pubmed", "3997819", "glycan_xref_glyconnect", "247", "G55061AW" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "253", "G22310AV" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "253", "G96921ZU" ], [ "", "Sialyl-alpha 2-6-mannosyl-beta 1-4-N-acetylglucosamine, a novel compound occurring in urine of patients with beta-mannosidosis.", "The Journal of biological chemistry", "1990 Nov 15", "van Pelt J, Dorland L, Duran M, Hokke CH, Kamerling JP, Vliegenthart JF", "protein_xref_pubmed", "2246252", "glycan_xref_glyconnect", "286", "G35562PU" ], [ "", "Sialyl-alpha 2-6-mannosyl-beta 1-4-N-acetylglucosamine, a novel compound occurring in urine of patients with beta-mannosidosis.", "The Journal of biological chemistry", "1990 Nov 15", "van Pelt J, Dorland L, Duran M, Hokke CH, Kamerling JP, Vliegenthart JF", "protein_xref_pubmed", "2246252", "glycan_xref_glyconnect", "286", "G17756LB" ], [ "", "Urinary oligosaccharides of fucosidosis. Evidence of the occurrence of X-antigenic determinant in serum-type sugar chains of glycoproteins.", "Journal of biochemistry", "1978 Oct", "Nishigaki M, Yamashita K, Matsuda I, Arashima S, Kobata A", "protein_xref_pubmed", "81832", "glycan_xref_glyconnect", "288", "G12313PD" ], [ "", "Urinary oligosaccharides of fucosidosis. Evidence of the occurrence of X-antigenic determinant in serum-type sugar chains of glycoproteins.", "Journal of biochemistry", "1978 Oct", "Nishigaki M, Yamashita K, Matsuda I, Arashima S, Kobata A", "protein_xref_pubmed", "81832", "glycan_xref_glyconnect", "288", "G10973QG" ], [ "", "The expression of free oligosaccharides in human seminal plasma.", "The Journal of biological chemistry", "2002 Sep 6", "Chalabi S, Easton RL, Patankar MS, Lattanzio FA, Morrison JC, Panico M, Morris HR, Dell A, Clark GF", "protein_xref_pubmed", "12063266", "glycan_xref_glyconnect", "294", "G64162JC" ], [ "", "The expression of free oligosaccharides in human seminal plasma.", "The Journal of biological chemistry", "2002 Sep 6", "Chalabi S, Easton RL, Patankar MS, Lattanzio FA, Morrison JC, Panico M, Morris HR, Dell A, Clark GF", "protein_xref_pubmed", "12063266", "glycan_xref_glyconnect", "294", "G21561XX" ], [ "", "Colorectal cancer cell lines show striking diversity of their O-glycome reflecting the cellular differentiation phenotype.", "Cellular and molecular life sciences : CMLS", "2021 Jan", "Madunic K, Zhang T, Mayboroda OA, Holst S, Stavenhagen K, Jin C, Karlsson NG, Lageveen-Kammeijer GSM, Wuhrer M", "protein_xref_pubmed", "32236654", "glycan_xref_glyconnect", "295", "G29940LU" ], [ "P19652-1", "Structural determination of N-linked carbohydrates by matrix-assisted laser desorption/ionization-mass spectrometry following enzymatic release within sodium dodecyl sulphate-polyacrylamide electrophoresis gels: application to species-specific glycosylation of alpha1-acid glycoprotein.", "Electrophoresis", "1998 Aug", "Kuster B, Hunter AP, Wheeler SF, Dwek RA, Harvey DJ", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "G88756OE" ], [ "P19652-1", "Structural determination of N-linked carbohydrates by matrix-assisted laser desorption/ionization-mass spectrometry following enzymatic release within sodium dodecyl sulphate-polyacrylamide electrophoresis gels: application to species-specific glycosylation of alpha1-acid glycoprotein.", "Electrophoresis", "1998 Aug", "Kuster B, Hunter AP, Wheeler SF, Dwek RA, Harvey DJ", "protein_xref_pubmed", "9740055", "protein_xref_glyconnect", "14", "G88555GL" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "306", "G15531AF" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "306", "G79896CK" ], [ "", "Primary structure of the N-glycosidically linked sialoglycans of secretory immunoglobulins A from human milk.", "European journal of biochemistry", "1982 Jul", "Pierce-Cretel A, Pamblanco M, Strecker G, Montreuil J, Spik G, Dorland L, Van Halbeek H, Vliegenthart JF", "protein_xref_pubmed", "7117239", "glycan_xref_glyconnect", "311", "G22310AV" ], [ "", "Primary structure of the N-glycosidically linked sialoglycans of secretory immunoglobulins A from human milk.", "European journal of biochemistry", "1982 Jul", "Pierce-Cretel A, Pamblanco M, Strecker G, Montreuil J, Spik G, Dorland L, Van Halbeek H, Vliegenthart JF", "protein_xref_pubmed", "7117239", "glycan_xref_glyconnect", "311", "G56749GV" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "311", "G56749GV" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "317", "G04576KS" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "317", "G23294PN" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "331", "G25418HZ" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "331", "G94281RO" ], [ "", "Hypomorphic homozygous mutations in phosphoglucomutase 3 (PGM3) impair immunity and increase serum IgE levels.", "The Journal of allergy and clinical immunology", "2014 May", "Sassi A, Lazaroski S, Wu G, Haslam SM, Fliegauf M, Mellouli F, Patiroglu T, Unal E, Ozdemir MA, Jouhadi Z, Khadir K, Ben-Khemis L, Ben-Ali M, Ben-Mustapha I, Borchani L, Pfeifer D, Jakob T, Khemiri M, Asplund AC, Gustafsson MO, Lundin KE, Falk-Sorqvist E, Moens LN, Gungor HE, Engelhardt KR, Dziadzio M, Stauss H, Fleckenstein B, Meier R, Prayitno K, Maul-Pavicic A, Schaffer S, Rakhmanov M, Henneke P, Kraus H, Eibel H, Kolsch U, Nadifi S, Nilsson M, Bejaoui M, Schaffer AA, Smith CI, Dell A, Barbouche MR, Grimbacher B", "protein_xref_pubmed", "24698316", "glycan_xref_glyconnect", "350", "G91473PK" ], [ "", "Hypomorphic homozygous mutations in phosphoglucomutase 3 (PGM3) impair immunity and increase serum IgE levels.", "The Journal of allergy and clinical immunology", "2014 May", "Sassi A, Lazaroski S, Wu G, Haslam SM, Fliegauf M, Mellouli F, Patiroglu T, Unal E, Ozdemir MA, Jouhadi Z, Khadir K, Ben-Khemis L, Ben-Ali M, Ben-Mustapha I, Borchani L, Pfeifer D, Jakob T, Khemiri M, Asplund AC, Gustafsson MO, Lundin KE, Falk-Sorqvist E, Moens LN, Gungor HE, Engelhardt KR, Dziadzio M, Stauss H, Fleckenstein B, Meier R, Prayitno K, Maul-Pavicic A, Schaffer S, Rakhmanov M, Henneke P, Kraus H, Eibel H, Kolsch U, Nadifi S, Nilsson M, Bejaoui M, Schaffer AA, Smith CI, Dell A, Barbouche MR, Grimbacher B", "protein_xref_pubmed", "24698316", "glycan_xref_glyconnect", "350", "G65219TP" ], [ "", "Colorectal cancer cell lines show striking diversity of their O-glycome reflecting the cellular differentiation phenotype.", "Cellular and molecular life sciences : CMLS", "2021 Jan", "Madunic K, Zhang T, Mayboroda OA, Holst S, Stavenhagen K, Jin C, Karlsson NG, Lageveen-Kammeijer GSM, Wuhrer M", "protein_xref_pubmed", "32236654", "glycan_xref_glyconnect", "375", "G59155GF" ], [ "", "Isolation and characterization of novel phosphate-containing sialyloligosaccharides from normal human urine.", "European journal of biochemistry", "1984 Apr 16", "Parkkinen J, Finne J", "protein_xref_pubmed", "6714239", "glycan_xref_glyconnect", "394", "G23094JF" ], [ "", "Hypomorphic homozygous mutations in phosphoglucomutase 3 (PGM3) impair immunity and increase serum IgE levels.", "The Journal of allergy and clinical immunology", "2014 May", "Sassi A, Lazaroski S, Wu G, Haslam SM, Fliegauf M, Mellouli F, Patiroglu T, Unal E, Ozdemir MA, Jouhadi Z, Khadir K, Ben-Khemis L, Ben-Ali M, Ben-Mustapha I, Borchani L, Pfeifer D, Jakob T, Khemiri M, Asplund AC, Gustafsson MO, Lundin KE, Falk-Sorqvist E, Moens LN, Gungor HE, Engelhardt KR, Dziadzio M, Stauss H, Fleckenstein B, Meier R, Prayitno K, Maul-Pavicic A, Schaffer S, Rakhmanov M, Henneke P, Kraus H, Eibel H, Kolsch U, Nadifi S, Nilsson M, Bejaoui M, Schaffer AA, Smith CI, Dell A, Barbouche MR, Grimbacher B", "protein_xref_pubmed", "24698316", "glycan_xref_glyconnect", "398", "G10773YW" ], [ "", "Hypomorphic homozygous mutations in phosphoglucomutase 3 (PGM3) impair immunity and increase serum IgE levels.", "The Journal of allergy and clinical immunology", "2014 May", "Sassi A, Lazaroski S, Wu G, Haslam SM, Fliegauf M, Mellouli F, Patiroglu T, Unal E, Ozdemir MA, Jouhadi Z, Khadir K, Ben-Khemis L, Ben-Ali M, Ben-Mustapha I, Borchani L, Pfeifer D, Jakob T, Khemiri M, Asplund AC, Gustafsson MO, Lundin KE, Falk-Sorqvist E, Moens LN, Gungor HE, Engelhardt KR, Dziadzio M, Stauss H, Fleckenstein B, Meier R, Prayitno K, Maul-Pavicic A, Schaffer S, Rakhmanov M, Henneke P, Kraus H, Eibel H, Kolsch U, Nadifi S, Nilsson M, Bejaoui M, Schaffer AA, Smith CI, Dell A, Barbouche MR, Grimbacher B", "protein_xref_pubmed", "24698316", "glycan_xref_glyconnect", "398", "G12511VU" ], [ "P14151-1", "Carbohydrate structures of soluble human L-selectin recombinantly expressed in baby-hamster kidney cells.", "Biotechnology and applied biochemistry", "2000 Aug", "Gohlke M, Mach U, Nuck R, Zimmermann-Kordmann M, Grunow D, Fieger C, Volz B, Tauber R, Petri T, Debus N, Reutter W", "protein_xref_pubmed", "10918037", "protein_xref_glyconnect", "346", "G55373ZG" ], [ "P14151-1", "Carbohydrate structures of soluble human L-selectin recombinantly expressed in baby-hamster kidney cells.", "Biotechnology and applied biochemistry", "2000 Aug", "Gohlke M, Mach U, Nuck R, Zimmermann-Kordmann M, Grunow D, Fieger C, Volz B, Tauber R, Petri T, Debus N, Reutter W", "protein_xref_pubmed", "10918037", "protein_xref_glyconnect", "346", "G44215PV" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "427", "G52934AK" ], [ "", "Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis.", "Journal of proteome research", "2021 Feb 5", "Wongtrakul-Kish K, Herbert BR, Packer NH", "protein_xref_pubmed", "33383989", "glycan_xref_glyconnect", "427", "G79568CQ" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "461", "G02014WF" ], [ "", "Severe infantile sialidosis--the characteristics of oligosaccharides isolated from the urine and the abdominal ascites.", "The Tohoku journal of experimental medicine", "1992 Apr", "Nakamura Y, Takahashi Y, Yamaguchi S, Omiya S, Orii T, Yara A, Gushiken M", "protein_xref_pubmed", "1502687", "glycan_xref_glyconnect", "461", "G83853UX" ], [ "", "A comparative study of sialyloligosaccharides isolated from sialidosis and galactosialidosis urine.", "Journal of inherited metabolic disease", "1991", "Van Pelt J, Kamerling JP, Bakker HD, Vliegenthart JF", "protein_xref_pubmed", "1779619", "glycan_xref_glyconnect", "468", "G04501FH" ], [ "", "A comparative study of sialyloligosaccharides isolated from sialidosis and galactosialidosis urine.", "Journal of inherited metabolic disease", "1991", "Van Pelt J, Kamerling JP, Bakker HD, Vliegenthart JF", "protein_xref_pubmed", "1779619", "glycan_xref_glyconnect", "468", "G18618EA" ] ] }, "readme": "Name\n - Human Proteoform Citations (GlyConnect)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2020-04-28T10:49:06.505148\n\nModified on\n - 2023-03-14T16:36:45.444Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The Human Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: human_proteoform_citations_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1240\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"417\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"80\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"367\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"410\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"417\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"2\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1557\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"2027\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_proteoform_citations_glycosylation_sites_glyconnect.csv" }