{ "bcoid": "GLY_000464", "title": "GlyGen-Pharos Crossreferences Mapping", "description": "The GlyGen-Pharos Cross-references Mapping dataset contains GlyGen's human [taxid:9606] UniProtKB accessions ...", "filename": "protein_glygen_pharos_xref_mapping.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "GlyGen-Pharos Crossreferences" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q13507...", "https://glyg..." ], [ "Q13506...", "https://glyg..." ] ], "headers": [ "uniprotkb_ac...", "glygen_prote..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_ac" }, { "type": "string", "label": "glygen_protein_url" } ], [ "Q13507", "https://glygen.org/protein/Q13507" ], [ "Q13506", "https://glygen.org/protein/Q13506" ], [ "Q9HCK8", "https://glygen.org/protein/Q9HCK8" ], [ "Q9HCK5", "https://glygen.org/protein/Q9HCK5" ], [ "A6NFN9", "https://glygen.org/protein/A6NFN9" ], [ "Q9HCK4", "https://glygen.org/protein/Q9HCK4" ], [ "Q9HCK1", "https://glygen.org/protein/Q9HCK1" ], [ "Q9HCK0", "https://glygen.org/protein/Q9HCK0" ], [ "Q9Y3Y4", "https://glygen.org/protein/Q9Y3Y4" ], [ "Q5MIZ7", "https://glygen.org/protein/Q5MIZ7" ], [ "A6NFN3", "https://glygen.org/protein/A6NFN3" ], [ "Q86VB7", "https://glygen.org/protein/Q86VB7" ], [ "Q68G74", "https://glygen.org/protein/Q68G74" ], [ "A0A0J9YWL9", "https://glygen.org/protein/A0A0J9YWL9" ], [ "Q9Y3Y2", "https://glygen.org/protein/Q9Y3Y2" ], [ "Q68G75", "https://glygen.org/protein/Q68G75" ], [ "P28347", "https://glygen.org/protein/P28347" ], [ "Q86V88", "https://glygen.org/protein/Q86V88" ], [ "Q86UW8", "https://glygen.org/protein/Q86UW8" ], [ "Q9Y3Q4", "https://glygen.org/protein/Q9Y3Q4" ], [ "Q9BS34", "https://glygen.org/protein/Q9BS34" ], [ "Q86V87", "https://glygen.org/protein/Q86V87" ], [ "Q9Y3Q3", "https://glygen.org/protein/Q9Y3Q3" ], [ "Q86UW7", "https://glygen.org/protein/Q86UW7" ], [ "Q9Y426", "https://glygen.org/protein/Q9Y426" ], [ "Q86UW6", "https://glygen.org/protein/Q86UW6" ], [ "Q86V86", "https://glygen.org/protein/Q86V86" ], [ "Q9BRR3", "https://glygen.org/protein/Q9BRR3" ], [ "Q86V85", "https://glygen.org/protein/Q86V85" ], [ "Q9Y3Q0", "https://glygen.org/protein/Q9Y3Q0" ], [ "Q9BRR9", "https://glygen.org/protein/Q9BRR9" ], [ "Q9BRR8", "https://glygen.org/protein/Q9BRR8" ], [ "Q86UW2", "https://glygen.org/protein/Q86UW2" ], [ "Q9Y421", "https://glygen.org/protein/Q9Y421" ], [ "Q9BRR6", "https://glygen.org/protein/Q9BRR6" ], [ "Q86UW1", "https://glygen.org/protein/Q86UW1" ], [ "Q86V81", "https://glygen.org/protein/Q86V81" ], [ "Q9HCB6", "https://glygen.org/protein/Q9HCB6" ], [ "Q9BS31", "https://glygen.org/protein/Q9BS31" ], [ "Q9Y3Q8", "https://glygen.org/protein/Q9Y3Q8" ], [ "Q9Y3Q7", "https://glygen.org/protein/Q9Y3Q7" ], [ "Q9BRR0", "https://glygen.org/protein/Q9BRR0" ], [ "Q9NV64", "https://glygen.org/protein/Q9NV64" ], [ "Q9UIH9", "https://glygen.org/protein/Q9UIH9" ], [ "Q86UW9", "https://glygen.org/protein/Q86UW9" ], [ "Q9NUU6", "https://glygen.org/protein/Q9NUU6" ], [ "Q99766", "https://glygen.org/protein/Q99766" ], [ "Q9NV66", "https://glygen.org/protein/Q9NV66" ], [ "Q01523", "https://glygen.org/protein/Q01523" ], [ "Q9NUU7", "https://glygen.org/protein/Q9NUU7" ], [ "Q01524", "https://glygen.org/protein/Q01524" ], [ "Q99767", "https://glygen.org/protein/Q99767" ], [ "Q8WUU4", "https://glygen.org/protein/Q8WUU4" ], [ "Q8WUU5", "https://glygen.org/protein/Q8WUU5" ], [ "Q8WV60", "https://glygen.org/protein/Q8WV60" ], [ "Q8WUU8", "https://glygen.org/protein/Q8WUU8" ], [ "Q96P09", "https://glygen.org/protein/Q96P09" ], [ "Q8N9Y4", "https://glygen.org/protein/Q8N9Y4" ], [ "Q86UV7", "https://glygen.org/protein/Q86UV7" ], [ "Q9BRQ4", "https://glygen.org/protein/Q9BRQ4" ], [ "Q9Y3R5", "https://glygen.org/protein/Q9Y3R5" ], [ "Q86UV6", "https://glygen.org/protein/Q86UV6" ], [ "Q9BRQ3", "https://glygen.org/protein/Q9BRQ3" ], [ "Q9Y3R4", "https://glygen.org/protein/Q9Y3R4" ], [ "Q86UV5", "https://glygen.org/protein/Q86UV5" ], [ "Q9BRQ8", "https://glygen.org/protein/Q9BRQ8" ], [ "Q9UII4", "https://glygen.org/protein/Q9UII4" ], [ "Q6XCG6", "https://glygen.org/protein/Q6XCG6" ], [ "Q9Y3R0", "https://glygen.org/protein/Q9Y3R0" ], [ "Q86V71", "https://glygen.org/protein/Q86V71" ], [ "Q9BS26", "https://glygen.org/protein/Q9BS26" ], [ "Q9BRQ6", "https://glygen.org/protein/Q9BRQ6" ], [ "Q9UII2", "https://glygen.org/protein/Q9UII2" ], [ "Q9BRQ5", "https://glygen.org/protein/Q9BRQ5" ], [ "Q9NV70", "https://glygen.org/protein/Q9NV70" ], [ "Q9UII6", "https://glygen.org/protein/Q9UII6" ], [ "Q9UII5", "https://glygen.org/protein/Q9UII5" ], [ "A0A0J9YX35", "https://glygen.org/protein/A0A0J9YX35" ], [ "Q9NV72", "https://glygen.org/protein/Q9NV72" ], [ "Q9BRQ0", "https://glygen.org/protein/Q9BRQ0" ], [ "Q5MJ09", "https://glygen.org/protein/Q5MJ09" ], [ "Q5MJ08", "https://glygen.org/protein/Q5MJ08" ], [ "Q5MJ07", "https://glygen.org/protein/Q5MJ07" ], [ "Q99755", "https://glygen.org/protein/Q99755" ] ] }, "readme": "Name\n - GlyGen-Pharos Crossreferences Mapping\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2020-04-03T22:31:02.233246\n\nModified on\n - 2022-09-26T09:05:56.479326\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The GlyGen-Pharos Cross-references Mapping dataset contains GlyGen's human [taxid:9606] UniProtKB accessions and corresponding GlyGen URLs. The dataset is derived from 2019-09 UniProtKB release.\n - The dataset is created for Pharos database to crosslink their protein page links to GlyGen protein pages.\n - The log file contains the Pharos protein accessions that could not be mapped to GlyGen protein accessions\n\nDescription Domain\n Keywords\n - Pharos\n - GlyGen\n - crossreferences\n - human\n - mouse\n - rat\n\n Pipeline Steps\n - Step-1: The script loads the human UniProtKB GlyGen accessions that mapped to the Pharos protein accessions along with the GlyGen protein accession URL and extracts it into csv dataset file. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_masterlist.csv\n Name: fruitfly_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_protein_xref_refseq.csv\n Name: fruitfly_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_proteoform_glycosylation_sites_glyconnect.csv\n Name: fruitfly_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Name: fruitfly_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Name: fruitfly_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/fruitfly_proteoform_glycosylation_sites_uniprotkb.csv\n Name: glycan_xref_pubchem.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_xref_pubchem.csv\n Name: hcv1a_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/hcv1a_protein_masterlist.csv\n Name: hcv1a_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/hcv1a_proteoform_glycosylation_sites_literature.csv\n Name: hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n Name: hcv1b_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/hcv1b_protein_masterlist.csv\n Name: hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n Name: human_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_masterlist.csv\n Name: human_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_refseq.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_gptwiki.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n Name: human_proteoform_glycosylation_sites_harvard.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n Name: human_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_literature.csv\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Name: human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Name: human_proteoform_glycosylation_sites_o_gluc.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_o_gluc.csv\n Name: human_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_tyr_o_linked.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_tyr_o_linked.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Name: mouse_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_masterlist.csv\n Name: mouse_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_xref_refseq.csv\n Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n Name: mouse_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_literature_mining.csv\n Name: mouse_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: mouse_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Name: mouse_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Name: mouse_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_pdb.csv\n Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n Name: mouse_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_proteoform_glycosylation_sites_uniprotkb.csv\n Name: rat_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_masterlist.csv\n Name: rat_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_refseq.csv\n Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n Name: rat_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_literature_mining.csv\n Name: rat_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: rat_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Name: rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n Name: rat_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_pdb.csv\n Name: rat_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_unicarbkb.csv\n Name: rat_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: rat_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv\n Name: sarscov1_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov1_protein_masterlist.csv\n Name: sarscov1_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov1_protein_xref_refseq.csv\n Name: sarscov1_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov1_proteoform_glycosylation_sites_literature.csv\n Name: sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n Name: sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n Name: sarscov2_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov2_protein_masterlist.csv\n Name: sarscov2_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov2_protein_xref_refseq.csv\n Name: sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n Name: sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n Name: sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n Output Subdomain\n Name: protein_glygen_pharos_xref_mapping.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/protein_glygen_pharos_xref_mapping.csv\n Name: protein_glygen_pharos_xref_mapping.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/protein_glygen_pharos_xref_mapping.stat.csv\n\nFields\n Name: \"uniprotkb_ac\"\n Description: \"Accession assigned to the protein in the UniProtKB database\"\n Unique Values: \"19949\"\n Name: \"glygen_protein_url\"\n Description: \"GlyGen protein detail page URL for GlyGen's UniProtKB proteins\"\n Unique Values: \"19949\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/protein_glygen_pharos_xref_mapping.csv" }