{ "bcoid": "GLY_000407", "title": "Rat NCBI Protein Linkouts", "description": "The Rat NCBI Protein Linkouts contains rat [taxid:10116] NCBI RefSeq accessions with their corresponding ...", "filename": "rat_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tags": [ "NCBI Linkouts" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "XP_006235834", "https://glygen.org/protein/Q5RJZ1", "", "", "", "" ], [ "10227", "Protein", "XP_008764072", "https://glygen.org/protein/F1LVT6", "", "", "", "" ], [ "10227", "Protein", "NP_001041507", "https://glygen.org/protein/Q0HA29", "", "", "", "" ], [ "10227", "Protein", "XP_008758946", "https://glygen.org/protein/A0A0G2JVG5", "", "", "", "" ], [ "10227", "Protein", "NP_037168", "https://glygen.org/protein/P30937", "", "", "", "" ], [ "10227", "Protein", "NP_062241", "https://glygen.org/protein/O35152", "", "", "", "" ], [ "10227", "Protein", "NP_598206", "https://glygen.org/protein/P30936", "", "", "", "" ], [ "10227", "Protein", "NP_059054", "https://glygen.org/protein/O35158", "", "", "", "" ], [ "10227", "Protein", "NP_671747", "https://glygen.org/protein/P02761", "", "", "", "" ], [ "10227", "Protein", "NP_445740", "https://glygen.org/protein/P02764", "", "", "", "" ], [ "10227", "Protein", "NP_036813", "https://glygen.org/protein/P02767", "", "", "", "" ], [ "10227", "Protein", "NP_001099679", "https://glygen.org/protein/D4A4W8", "", "", "", "" ], [ "10227", "Protein", "NP_001000252", "https://glygen.org/protein/D4A4W0", "", "", "", "" ], [ "10227", "Protein", "XP_017443583", "https://glygen.org/protein/D4A4W1", "", "", "", "" ], [ "10227", "Protein", "NP_001178849", "https://glygen.org/protein/D4A4W2", "", "", "", "" ], [ "10227", "Protein", "XP_006240610", "https://glygen.org/protein/F7EN52", "", "", "", "" ], [ "10227", "Protein", "NP_001102458", "https://glygen.org/protein/D4A4W4", "", "", "", "" ], [ "10227", "Protein", "XP_008765859", "https://glygen.org/protein/D4A4W5", "", "", "", "" ], [ "10227", "Protein", "NP_001102977", "https://glygen.org/protein/D4A4W6", "", "", "", "" ], [ "10227", "Protein", "NP_001103026", "https://glygen.org/protein/D4A4W7", "", "", "", "" ], [ "10227", "Protein", "XP_006224266", "https://glygen.org/protein/A0A8I6ABX7", "", "", "", "" ], [ "10227", "Protein", "NP_036761", "https://glygen.org/protein/P01237", "", "", "", "" ], [ "10227", "Protein", "NP_001029147", "https://glygen.org/protein/P01230", "", "", "", "" ], [ "10227", "Protein", "NP_113719", "https://glygen.org/protein/P09006", "", "", "", "" ], [ "10227", "Protein", "NP_446248", "https://glygen.org/protein/Q9JHY1", "", "", "", "" ], [ "10227", "Protein", "NP_075237", "https://glygen.org/protein/Q9JHY2", "", "", "", "" ], [ "10227", "Protein", "NP_071610", "https://glygen.org/protein/Q9JHY7", "", "", "", "" ], [ "10227", "Protein", "NP_690003", "https://glygen.org/protein/Q9WU49", "", "", "", "" ], [ "10227", "Protein", "XP_006239308", "https://glygen.org/protein/F1MAA4", "", "", "", "" ], [ "10227", "Protein", "XP_006245984", "https://glygen.org/protein/P83748", "", "", "", "" ], [ "10227", "Protein", "XP_006246187", "https://glygen.org/protein/P18508", "", "", "", "" ], [ "10227", "Protein", "NP_434692", "https://glygen.org/protein/P04757", "", "", "", "" ], [ "10227", "Protein", "XP_008762354", "https://glygen.org/protein/Q8R512", "", "", "", "" ], [ "10227", "Protein", "NP_001102559", "https://glygen.org/protein/A0A8I5Y6V4", "", "", "", "" ], [ "10227", "Protein", "XP_017457136", "https://glygen.org/protein/D3ZGN2", "", "", "", "" ], [ "10227", "Protein", "XP_006257013", "https://glygen.org/protein/Q9Z0V5", "", "", "", "" ], [ "10227", "Protein", "NP_001257790", "https://glygen.org/protein/Q9R1N3", "", "", "", "" ], [ "10227", "Protein", "NP_001102016", "https://glygen.org/protein/D3ZIY3", "", "", "", "" ], [ "10227", "Protein", "XP_006254733", "https://glygen.org/protein/Q62952", "", "", "", "" ], [ "10227", "Protein", "XP_017448191", "https://glygen.org/protein/A0A8I6A6H3", "", "", "", "" ], [ "10227", "Protein", "NP_001103108", "https://glygen.org/protein/D3ZFP5", "", "", "", "" ], [ "10227", "Protein", "NP_001178734", "https://glygen.org/protein/D3ZFP4", "", "", "", "" ], [ "10227", "Protein", "NP_001099755", "https://glygen.org/protein/D3ZFP7", "", "", "", "" ], [ "10227", "Protein", "XP_218829", "https://glygen.org/protein/D3ZFP6", "", "", "", "" ], [ "10227", "Protein", "NP_001128013", "https://glygen.org/protein/D3ZFP1", "", "", "", "" ], [ "10227", "Protein", "NP_001102224", "https://glygen.org/protein/D4A131", "", "", "", "" ], [ "10227", "Protein", "NP_001101788", "https://glygen.org/protein/A0A1W2Q641", "", "", "", "" ], [ "10227", "Protein", "NP_001178605", "https://glygen.org/protein/P09875", "", "", "", "" ], [ "10227", "Protein", "NP_001099415", "https://glygen.org/protein/D4A138", "", "", "", "" ], [ "10227", "Protein", "NP_001333290", "https://glygen.org/protein/A0A8I6ALX9", "", "", "", "" ], [ "10227", "Protein", "NP_001099300", "https://glygen.org/protein/D3ZCS5", "", "", "", "" ], [ "10227", "Protein", "NP_001178638", "https://glygen.org/protein/D3ZCS4", "", "", "", "" ], [ "10227", "Protein", "NP_001099321", "https://glygen.org/protein/D3ZCS6", "", "", "", "" ], [ "10227", "Protein", "XP_017454472", "https://glygen.org/protein/D3ZCS1", "", "", "", "" ], [ "10227", "Protein", "NP_001178812", "https://glygen.org/protein/D3ZCS3", "", "", "", "" ], [ "10227", "Protein", "NP_001178847", "https://glygen.org/protein/A0A3B0J1M6", "", "", "", "" ], [ "10227", "Protein", "NP_001127979", "https://glygen.org/protein/D3ZCS9", "", "", "", "" ], [ "10227", "Protein", "NP_001101602", "https://glygen.org/protein/A0A0G2KAH3", "", "", "", "" ], [ "10227", "Protein", "NP_001178817", "https://glygen.org/protein/A0A8I6ACL3", "", "", "", "" ], [ "10227", "Protein", "NP_001128052", "https://glygen.org/protein/D3ZUF1", "", "", "", "" ], [ "10227", "Protein", "NP_445864", "https://glygen.org/protein/Q9JIL3", "", "", "", "" ], [ "10227", "Protein", "NP_001013150", "https://glygen.org/protein/A0A8I6A636", "", "", "", "" ], [ "10227", "Protein", "NP_001009617", "https://glygen.org/protein/Q6P5P5", "", "", "", "" ], [ "10227", "Protein", "NP_001101836", "https://glygen.org/protein/A0A0G2JVP1", "", "", "", "" ], [ "10227", "Protein", "NP_001007694", "https://glygen.org/protein/Q6P5P3", "", "", "", "" ], [ "10227", "Protein", "NP_001099395", "https://glygen.org/protein/D3ZXJ0", "", "", "", "" ], [ "10227", "Protein", "XP_017445447", "https://glygen.org/protein/D3ZB41", "", "", "", "" ], [ "10227", "Protein", "NP_001099447", "https://glygen.org/protein/A0A8I5ZXW0", "", "", "", "" ], [ "10227", "Protein", "NP_001101004", "https://glygen.org/protein/D3ZXJ5", "", "", "", "" ], [ "10227", "Protein", "XP_006223194", "https://glygen.org/protein/A0A8I6ACH9", "", "", "", "" ], [ "10227", "Protein", "NP_001165596", "https://glygen.org/protein/A0A0G2JVZ2", "", "", "", "" ], [ "10227", "Protein", "XP_001066449", "https://glygen.org/protein/A0A0G2JVZ7", "", "", "", "" ], [ "10227", "Protein", "XP_017444662", "https://glygen.org/protein/A0A8I6A180", "", "", "", "" ], [ "10227", "Protein", "XP_006239837", "https://glygen.org/protein/Q6AYA4", "", "", "", "" ], [ "10227", "Protein", "NP_067701", "https://glygen.org/protein/Q9QYH7", "", "", "", "" ], [ "10227", "Protein", "XP_001055605", "https://glygen.org/protein/D3Z813", "", "", "", "" ], [ "10227", "Protein", "XP_006256147", "https://glygen.org/protein/Q6MG49", "", "", "", "" ], [ "10227", "Protein", "NP_001074374", "https://glygen.org/protein/Q67ER9", "", "", "", "" ], [ "10227", "Protein", "XP_006242800", "https://glygen.org/protein/A0A8I6ARG8", "", "", "", "" ], [ "10227", "Protein", "NP_001101853", "https://glygen.org/protein/D3ZT68", "", "", "", "" ], [ "10227", "Protein", "NP_077338", "https://glygen.org/protein/Q9EPW1", "", "", "", "" ], [ "10227", "Protein", "NP_001103015", "https://glygen.org/protein/D3ZT64", "", "", "", "" ], [ "10227", "Protein", "NP_001000042", "https://glygen.org/protein/D3ZT66", "", "", "", "" ], [ "10227", "Protein", "NP_001178760", "https://glygen.org/protein/D4AE80", "", "", "", "" ] ] }, "readme": "Name\n - Rat NCBI Protein Linkouts\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2020-03-20T15:56:44.646296\n\nModified on\n - 2022-09-26T09:05:56.519333\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Rat NCBI Protein Linkouts contains rat [taxid:10116] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_proteinnames_refseq.csv\n Name: rat_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_ncbi_linkouts.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_ncbi_linkouts.csv\n Name: rat_protein_ncbi_linkouts.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"22035\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"17550\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_ncbi_linkouts.csv" }