{ "bcoid": "GLY_000401", "title": "Human Gene Symbols (UniProtKB)", "description": "The Human Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for human [taxid:9606] ...", "filename": "human_protein_genenames_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Gene Symbols" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "O75818-1...", "RPP40..." ], [ "Q658T7-1...", "FAM90A2P..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol_recommended" }, { "type": "string", "label": "gene_symbol_alternative" }, { "type": "string", "label": "orf_name" } ], [ "O75818-1", "RPP40", "", "" ], [ "Q658T7-1", "FAM90A2P", "", "" ], [ "Q8TDG4-1", "HELQ", "", "" ], [ "P30613-1", "PKLR", "PK1", "" ], [ "P30613-1", "PKLR", "PKL", "" ], [ "P50213-1", "IDH3A", "", "" ], [ "Q9BQI5-1", "SGIP1", "", "" ], [ "A0A1B0GX78-1", "TRBV12-5", "", "" ], [ "Q9NPB8-1", "GPCPD1", "", "" ], [ "Q5MIZ7-1", "PPP4R3B", "KIAA1387", "" ], [ "Q5MIZ7-1", "PPP4R3B", "PP4R3B", "" ], [ "Q5MIZ7-1", "PPP4R3B", "SMEK2", "" ], [ "Q9NV96-1", "TMEM30A", "", "" ], [ "Q99687-1", "MEIS3", "", "" ], [ "Q969N2-1", "PIGT", "", "" ], [ "P05093-1", "CYP17A1", "", "" ], [ "A0A1W2PQ27-1", "SSU72L1", "", "" ], [ "O60285-1", "NUAK1", "", "" ], [ "P14136-1", "GFAP", "", "" ], [ "P09471-1", "GNAO1", "", "" ], [ "Q9Y312-1", "AAR2", "", "" ], [ "Q9UNP4-1", "ST3GAL5", "", "" ], [ "Q7RTN6-1", "STRADA", "", "" ], [ "Q5SRE7-1", "PHYHD1", "", "" ], [ "Q2PZI1-1", "DPY19L1", "", "" ], [ "Q5VT40-1", "FAM78B", "", "" ], [ "O94887-1", "FARP2", "", "" ], [ "O95672-1", "ECEL1", "", "" ], [ "Q9Y448-1", "KNSTRN", "", "" ], [ "P39023-1", "RPL3", "", "" ], [ "Q8TC84-1", "FANK1", "", "" ], [ "Q13241-1", "KLRD1", "", "" ], [ "Q13283-1", "G3BP1", "", "" ], [ "Q12815-1", "TROAP", "", "" ], [ "Q14BN4-1", "SLMAP", "", "" ], [ "Q86W67-1", "FAM228A", "", "" ], [ "P68400-1", "CSNK2A1", "", "" ], [ "P29122-1", "PCSK6", "", "" ], [ "P51788-1", "CLCN2", "", "" ], [ "P23919-1", "DTYMK", "CDC8", "" ], [ "P23919-1", "DTYMK", "TMPK", "" ], [ "P23919-1", "DTYMK", "TYMK", "" ], [ "Q8NHX4-1", "SPATA3", "TSARG1", "" ], [ "Q8NHX9-1", "TPCN2", "TPC2", "" ], [ "O00165-1", "HAX1", "", "" ], [ "O94993-1", "SOX30", "", "" ], [ "Q9NXR8-1", "ING3", "", "HSPC301" ], [ "P10242-1", "MYB", "", "" ], [ "Q9GZW8-1", "MS4A7", "", "" ], [ "O14817-1", "TSPAN4", "", "" ], [ "Q9C0H5-1", "ARHGAP39", "KIAA1688", "" ], [ "Q8NB91-1", "FANCB", "", "" ], [ "Q6UWY5-1", "OLFML1", "", "" ], [ "Q6IQ23-1", "PLEKHA7", "", "" ], [ "Q9C0H9-5", "SRCIN1", "KIAA1684", "" ], [ "Q9C0H9-5", "SRCIN1", "P140", "" ], [ "Q9C0H9-5", "SRCIN1", "SNIP", "" ], [ "Q9NXR1-2", "NDE1", "NUDE", "" ], [ "Q8N6H7-1", "ARFGAP2", "ZNF289", "hCG_1811553" ], [ "Q07960-1", "ARHGAP1", "CDC42GAP", "" ], [ "Q07960-1", "ARHGAP1", "RHOGAP1", "" ], [ "Q9NXR5-1", "ANKRD10", "", "" ], [ "Q9NXR7-2", "BABAM2", "BRCC45", "" ], [ "Q9NXR7-2", "BABAM2", "BRE", "" ], [ "Q96J66-1", "ABCC11", "MRP8", "" ], [ "P49840-1", "GSK3A", "", "" ], [ "Q5JUK3-1", "KCNT1", "", "" ], [ "O75448-1", "MED24", "", "" ], [ "P25705-1", "ATP5F1A", "", "" ], [ "Q6UW68-1", "TMEM205", "", "" ], [ "Q9BUZ4-1", "TRAF4", "", "" ], [ "Q96IK0-1", "TMEM101", "", "" ], [ "Q7Z7G2-1", "CPLX4", "", "hCG_1776479" ], [ "Q8N8Q3-1", "ENDOV", "", "" ], [ "Q8IYT4-1", "KATNAL2", "", "" ], [ "Q53F39-1", "MPPE1", "", "" ], [ "A6NC51-1", "TMEM150B", "", "" ], [ "Q13829-1", "TNFAIP1", "", "" ], [ "Q8TF47-1", "ZFP90", "", "" ], [ "P51153-1", "RAB13", "", "" ], [ "Q5H9R7-1", "PPP6R3", "", "" ], [ "Q96ER3-1", "SAAL1", "", "" ], [ "P40424-1", "PBX1", "PRL", "" ], [ "P40425-1", "PBX2", "G17", "" ] ] }, "readme": "Name\n - Human Gene Symbols (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2020-03-16T11:26:15.442401\n\nModified on\n - 2022-09-26T09:05:56.549809\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for human [taxid:9606] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature commitees. (for more info - https://www.uniprot.org/help/gene_name). The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_genenames_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_genenames_uniprotkb.csv\n Name: human_protein_genenames_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_genenames_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20382\"\n Name: \"gene_symbol_recommended\"\n Description: \"\"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\"\n Unique Values: \"20520\"\n Name: \"gene_symbol_alternative\"\n Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n Unique Values: \"21864\"\n Name: \"orf_name\"\n Description: \"\"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\"\n Unique Values: \"4218\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_genenames_uniprotkb.csv" }