{ "bcoid": "GLY_000393", "title": "Mouse Protein Names (NCBI RefSeq)", "description": "The Mouse Protein Names (NCBI RefSeq) dataset contains mouse [taxid:10090] protein names (primary and ...", "filename": "mouse_protein_proteinnames_refseq.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tags": [ "Protein Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH24-1...", "NP_598608..." ], [ "Q8BH24-1...", "NP_598608..." ] ], "headers": [ "uniprotkb_ca...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "refseq_protein_name" } ], [ "Q8BH24-1", "NP_598608", "transmembrane 9 superfamily member 4 precursor" ], [ "Q8BH24-1", "NP_598608", "transmembrane 9 superfamily protein member 4" ], [ "Q8BH27-1", "NP_766282", "multiple epidermal growth factor-like domains protein 9 precursor" ], [ "Q8BH27-1", "NP_766282", "EGF-like-domain, multiple 5; multiple epidermal growth factor-like domains protein 9; EGF-like protein 5; multiple EGF-like domains protein 9; epidermal growth factor-like protein 5" ], [ "Q8BH26-1", "NP_001311444", "lysosomal enzyme trafficking factor isoform 2" ], [ "Q8BH26-1", "NP_001311444", "UPF0694 transmembrane protein C14orf109 homolog; transmembrane protein 251" ], [ "Q80T32-1", "NP_001334415", "adhesion G-protein coupled receptor D1 isoform 2 precursor" ], [ "Q80T32-1", "NP_001334415", "probable G-protein coupled receptor 133; G-protein coupled receptor PGR25; G protein coupled receptor Gpr133" ], [ "B2RXV4-1", "NP_001074728", "feline leukemia virus subgroup C receptor-related protein 1 isoform 1" ], [ "B2RXV4-1", "NP_001074728", "feline leukemia virus subgroup C receptor-related protein 1; major facilitator superfamily domain containing 7B" ], [ "E9Q3P4-1", "NP_001074832", "centromere protein F" ], [ "E9Q3P4-1", "NP_001074832", "leucine, glutamic acid, lysine family 1 protein; centromere autoantigen F" ], [ "A5H0M4-1", "NP_081894", "POTE ankyrin domain family member A isoform 2" ], [ "A5H0M4-1", "NP_081894", "gonad specific ankyrin repeat protein" ], [ "P03899-1", "NP_904335", "NADH dehydrogenase subunit 3" ], [ "O35153-1", "NP_061212", "BET1-like protein" ], [ "O35153-1", "NP_061212", "soluble N-ethylmaleimide-sensitive factor attachment protein (SNARE) 15; GOS-15; vesicle transport protein GOS15; golgi SNARE with a size of 15 kDa; golgi SNARE, 15 kD; blocked early in transport 1 homolog-like" ], [ "P03893-1", "NP_904329", "NADH dehydrogenase subunit 2" ], [ "Q9QYH9-1", "NP_062291", "tumor necrosis factor ligand superfamily member 14" ], [ "Q9QYH9-1", "NP_062291", "tumor necrosis factor ligand 1d" ], [ "P52479-1", "NP_001297559", "ubiquitin carboxyl-terminal hydrolase 10 isoform 2" ], [ "P52479-1", "NP_001297559", "ubiquintin c-terminal hydrolase related polypeptide; ubiquitin specific protease 10; ubiquitin carboxyl-terminal hydrolase 10; ubiquitin thioesterase 10; deubiquitinating enzyme 10; ubiquitin-specific-processing protease 10; ubiquitin thiolesterase 10" ], [ "P02762-1", "NP_001128599", "major urinary protein 11 precursor" ], [ "P02762-1", "NP_001128599", "major urinary protein 17; major urinary protein 14; Major urinary protein 6; MUP 6; Alpha-2U-globulin; Group 1, BS6; MUP11 and MUP8; Major urinary proteins 11 and 8; major urinary protein 11" ], [ "Q9QYH6-1", "NP_062765", "melanoma-associated antigen D1" ], [ "Q9QYH6-1", "NP_062765", "MAGE-D1 antigen; neurotrophin receptor-interacting MAGE homolog; melanoma antigen, family D, 1" ], [ "Q08AU9-1", "NP_001156945", "UPF0450 protein C17orf58 homolog isoform 1 precursor" ], [ "Q08AU9-1", "NP_001156945", "UPF0450 protein C17orf58 homolog" ], [ "Q08AU7-1", "NP_001191749", "myeloid-associated differentiation marker-like protein 2 isoform 2" ], [ "Q08AU7-1", "NP_001191749", "myeloid-associated differentiation marker-like protein 2" ], [ "Q5EBH1-1", "NP_001298023", "ras association domain-containing protein 5 isoform 2" ], [ "Q5EBH1-1", "NP_001298023", "ras association domain-containing protein 5; Rap1-binding protein; new ras effector 1; regulator for cell adhesion and polarization enriched in lymphoid tissues; novel ras effector 1" ], [ "Q80YU0-1", "NP_899004", "protein ABHD16B" ], [ "Q80YU0-1", "NP_899004", "abhydrolase domain-containing protein 16B; alpha/beta hydrolase domain-containing protein 16B" ], [ "Q5SRT8-1", "NP_001038995", "cyclin-J-like protein" ], [ "P70414-1", "NP_035536", "sodium/calcium exchanger 1 isoform A precursor" ], [ "P70414-1", "NP_035536", "sodium/calcium exchanger 1; Na/Ca exchanger; Na(+)/Ca(2+)-exchange protein 1; solute carrier family 8 member 1" ], [ "P70412-1", "NP_032437", "CUB and zona pellucida-like domain-containing protein 1 precursor" ], [ "P70412-1", "NP_032437", "integral membrane-associated protein 1; CUB and zona pellucida-like domain-containing protein 1; CUB and ZP domain-containing protein 1" ], [ "A0A0U1RNG7-1", "XP_006507673", "BTB/POZ domain-containing protein KCTD14 isoform X3" ], [ "P70419-1", "NP_056551", "polypeptide N-acetylgalactosaminyltransferase 3" ], [ "P70419-1", "NP_056551", "galNAc-T3; pp-GaNTase 3; polypeptide GalNAc transferase 3; protein-UDP acetylgalactosaminyltransferase 3; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3; ppGaNTase-T3; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3" ], [ "Q9EP78-1", "NP_068361", "carbohydrate sulfotransferase 7 precursor" ], [ "Q9EP78-1", "NP_068361", "carbohydrate sulfotransferase 7; chondroitin 6-sulfotransferase 2; N-acetylglucosamine 6-O-sulfotransferase 1; galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 5; N-acetylglucosamine 6-O-sulfotransferase 4" ], [ "Q9EP79-1", "NP_444452", "vomeronasal type-1 receptor 52" ], [ "Q9EP79-1", "NP_444452", "vomeronasal type-1 receptor A7; pheromone receptor VN3; vomeronasal receptor 3; vomeronasal 1 receptor, A7; vomernasal 1 receptor Vmn1r52" ], [ "Q9EP72-1", "NP_598510", "ER membrane protein complex subunit 7 precursor" ], [ "Q9EP72-1", "NP_598510", "UPF0480 protein C15orf24 homolog" ], [ "Q9EP73-1", "NP_068693", "programmed cell death 1 ligand 1 precursor" ], [ "Q9EP73-1", "NP_068693", "programmed cell death 1 ligand 1; B7 homolog 1; PDCD1 ligand 1" ], [ "Q9EP71-1", "NP_001159880", "ankycorbin isoform 1" ], [ "Q9EP71-1", "NP_001159880", "NORPEG-like protein; p125; retinoic acid-induced protein 14; novel retinal pigment epithelial cell protein; ankyrin repeat and coiled-coil structure-containing protein" ], [ "Q9EP75-1", "NP_001191262", "leukotriene-B4 omega-hydroxylase 3" ], [ "Q9EP75-1", "NP_001191262", "cytochrome P450 4F14; cytochrome P450-LTB-omega; leukotriene-B4 20-monooxygenase 3; cytochrome P450, subfamily IVF, polypeptide 14 (leukotriene B4 omega hydroxylase)" ], [ "Q8VF62-1", "NP_666529", "olfactory receptor 877" ], [ "Q8VF62-1", "NP_666529", "olfactory receptor MOR161-5; GA_x6K02T2PVTD-31540342-31541277" ], [ "P30282-1", "XP_006523616", "G1/S-specific cyclin-D3 isoform X2" ], [ "Q3UHI0-1", "NP_001334432", "serine-rich coiled-coil domain-containing protein 2 isoform 4" ], [ "Q3UHI0-1", "NP_001334432", "granule cell antiserum positive protein 14; protein FAM190B; granule cell antiserum positive 14; coiled-coil serine-rich protein 2; serine-rich coiled-coil domain-containing protein 2" ], [ "S4R213-1", "NP_001230191", "putative beta-lactamase-like 1" ], [ "Q91VV4-1", "NP_082386", "DENN domain-containing protein 2D isoform 1" ], [ "Q91VV4-1", "NP_082386", "DENN domain-containing protein 2D; DENN/MADD domain containing 2D" ], [ "P53702-1", "NP_001317978", "holocytochrome c-type synthase isoform 1" ], [ "P53702-1", "NP_001317978", "cytochrome c-type heme lyase; holocytochrome c-type synthase" ], [ "O08911-1", "NP_038899", "mitogen-activated protein kinase 12 isoform 1" ], [ "O08911-1", "NP_038899", "ERK-6; MAPK 12; MAP kinase 12; MAP kinase p38 gamma; stress-activated protein kinase 3; extracellular signal-regulated kinase 6; mitogen-activated protein kinase p38 gamma" ], [ "Q80WC9-1", "NP_776126", "beta-alanine-activating enzyme" ], [ "Q80WC9-1", "NP_776126", "acyl-CoA synthetase family member 4; 2-aminoadipic 6-semialdehyde dehydrogenase; protein LYS2 homolog; putative aminoadipate-semialdehyde dehydrogenase" ], [ "O08912-1", "NP_001153876", "polypeptide N-acetylgalactosaminyltransferase 1" ], [ "O08912-1", "NP_001153876", "galNAc-T1; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1; pp-GaNTase 1; polypeptide GalNAc transferase 1; protein-UDP acetylgalactosaminyltransferase 1; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1; ppGaNTase-T1" ], [ "O08915-1", "NP_001263213", "AH receptor-interacting protein" ], [ "O08914-1", "NP_034303", "fatty-acid amide hydrolase 1" ], [ "O08914-1", "NP_034303", "amide hydrolase; fatty acid amide hydrolase protein; oleamide hydrolase 1; anandamide amidohydrolase 1; fatty acid ester hydrolase" ], [ "O08917-1", "NP_032053", "flotillin-1 isoform 1" ], [ "Q80WC3-1", "NP_001116202", "trinucleotide repeat-containing gene 18 protein isoform A" ], [ "Q80WC3-1", "NP_001116202", "trinucleotide repeat-containing gene 18 protein" ], [ "O08918-1", "NP_031661", "cyclin-G2" ], [ "Q80WC1-1", "NP_796159", "ubinuclein-2" ], [ "Q80WC7-1", "NP_835456", "arf-GAP domain and FG repeat-containing protein 2 isoform 2" ], [ "Q80WC7-1", "NP_835456", "arf-GAP domain and FG repeats-containing protein 2; HIV-1 Rev-binding protein-like protein; rev/Rex activation domain-binding protein related" ], [ "Q9JHY4-1", "NP_001039019", "WAP four-disulfide core domain protein 15B precursor" ], [ "Q9JHY4-1", "NP_001039019", "WAP four-disulfide core domain 15; WAP four-disulfide core domain protein 15B; elafin-like protein I; single WAP motif protein 1" ], [ "Q8BYW1-1", "NP_001032816", "rho GTPase-activating protein 25 isoform a" ], [ "Q8BYW1-1", "NP_001032816", "rho GTPase-activating protein 25; rho-type GTPase-activating protein 25" ] ] }, "readme": "Name\n - Mouse Protein Names (NCBI RefSeq)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2020-03-15T13:29:07.339002\n\nModified on\n - 2022-09-26T09:05:27.672378\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Names (NCBI RefSeq) dataset contains mouse [taxid:10090] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein names\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_xref_refseq.csv\n Output Subdomain\n Name: mouse_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_proteinnames_refseq.csv\n Name: mouse_protein_proteinnames_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_proteinnames_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20233\"\n Name: \"refseq_ac\"\n Description: \"Accession in the NCBI RefSeq database\"\n Unique Values: \"23521\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"40065\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/mouse_protein_proteinnames_refseq.csv" }