{ "bcoid": "GLY_000392", "title": "Human Protein Names (NCBI RefSeq)", "description": "The Human Protein Names (NCBI RefSeq) dataset contains human [taxid:9606] protein names (primary and ...", "filename": "human_protein_proteinnames_refseq.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Protein Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "NP_000289..." ], [ "P30613-1...", "NP_000289..." ] ], "headers": [ "uniprotkb_ca...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "refseq_protein_name" } ], [ "P30613-1", "NP_000289", "pyruvate kinase PKLR isoform 1" ], [ "P30613-1", "NP_000289", "pyruvate kinase type L; pyruvate kinase, liver and blood cell; pyruvate kinase 1; pyruvate kinase isozyme R/L; R-type/L-type pyruvate kinase; red cell/liver pyruvate kinase; pyruvate kinase isozymes R/L; pyruvate kinase isozymes L/R; pyruvate kinase PKLR; pyruvate kinase, liver and RBC" ], [ "Q96J66-1", "NP_115972", "ATP-binding cassette sub-family C member 11 isoform a" ], [ "Q96J66-1", "NP_115972", "multi-resistance protein 8; ATP-binding cassette transporter MRP8; ATP-binding cassette protein C11; ATP-binding cassette transporter sub-family C member 11; ATP-binding cassette sub-family C member 11; multidrug resistance-associated protein 8; ATP-binding cassette, sub-family C (CFTR/MRP), member 11" ], [ "Q96J65-1", "NP_150229", "ATP-binding cassette sub-family C member 12 isoform 1" ], [ "Q96J65-1", "NP_150229", "multidrug resistance-associated protein 9; ATP-binding cassette transporter sub-family C member 12; ATP-binding cassette sub-family C member 12; ATP-binding cassette, sub-family C (CFTR/MRP), member 12" ], [ "Q8NC06-1", "XP_016880588", "acyl-CoA-binding domain-containing protein 4 isoform X19" ], [ "Q8NBW4-1", "NP_001269358", "neutral amino acid transporter 9 isoform 4" ], [ "Q8NBW4-1", "NP_001269358", "putative sodium-coupled neutral amino acid transporter 9; up-regulated in lung cancer 11" ], [ "P40424-1", "NP_001191892", "pre-B-cell leukemia transcription factor 1 isoform 3" ], [ "P40424-1", "NP_001191892", "pre-B-cell leukemia transcription factor 1; homeobox protein PRL; homeobox protein PBX1; pre-B-cell leukemia homeobox 1" ], [ "P40425-1", "NP_002577", "pre-B-cell leukemia transcription factor 2" ], [ "P40425-1", "NP_002577", "homeobox 12; homeobox protein PBX2; XXbac-BPG300A18.13; pre-B-cell leukemia homeobox 2" ], [ "P40426-1", "NP_001128250", "pre-B-cell leukemia transcription factor 3 isoform 2" ], [ "P40426-1", "NP_001128250", "pre-B-cell leukemia transcription factor 3; homeobox protein PBX3; pre-B-cell leukemia homeobox 3" ], [ "P40429-1", "NP_001257420", "60S ribosomal protein L13a isoform 2" ], [ "P40429-1", "NP_001257420", "tissue specific transplantation antigen 1; 60S ribosomal protein L13a; 23 kDa highly basic protein; large ribosomal subunit protein uL13; epididymis secretory sperm binding protein; highly basic protein 23 kDa" ], [ "P62873-1", "NP_001269467", "guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 isoform 2" ], [ "P62873-1", "NP_001269467", "guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1; transducin beta chain 1; heterotrimeric guanine nucleotide-binding protein 2A; beta subunit, signal-transducing proteins GS/GI; testicular tissue protein Li 72; guanine nucleotide binding protein (G protein), beta polypeptide 1" ], [ "Q9H2I8-1", "NP_114413", "leucine-rich melanocyte differentiation-associated protein isoform 2" ], [ "Q9H2I8-1", "NP_114413", "leucine-rich repeat-containing protein C10orf11; leucine-rich melanocyte differentiation-associated protein" ], [ "H0YL14-1", "NP_001243455", "transmembrane protein 250" ], [ "H0YL14-1", "NP_001243455", "herpes virus UL25-binding protein; protein C9orf69" ], [ "Q9GZS3-1", "NP_001290177", "SKI8 subunit of superkiller complex protein isoform b" ], [ "Q9GZS3-1", "NP_001290177", "recombination protein REC14; WD repeat-containing protein 61; meiotic recombination REC14 protein homolog; SKI8 homolog; SKI complex component SKI8; Ski complex subunit Rec14; WD repeat domain 61; SKI8 subunit of superkiller complex protein" ], [ "Q5VVP1-1", "NP_001138668", "spermatogenesis-associated protein 31A6" ], [ "Q5VVP1-1", "NP_001138668", "family with sequence similarity 75, member A6" ], [ "Q8N865-1", "NP_620166", "uncharacterized protein C7orf31" ], [ "A6NIR3-1", "NP_001137472", "arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5" ], [ "A6NIR3-1", "NP_001137472", "centaurin, gamma-like family, member 2; AGAP-5" ], [ "Q86VY4-1", "NP_277047", "testis-specific Y-encoded-like protein 5" ], [ "Q86VY4-1", "NP_277047", "TSPY-like protein 5" ], [ "Q86VY9-1", "NP_001245205", "transmembrane protein 200A" ], [ "Q86VY9-1", "NP_001245205", "two transmembrane C" ], [ "Q9Y5S9-1", "NP_005096", "RNA-binding protein 8A" ], [ "Q9Y5S9-1", "NP_005096", "binder of OVCA1-1; ribonucleoprotein RBM8; RNA binding motif protein 8B; BOV-1; RNA-binding protein Y14; ribonucleoprotein RBM8A" ], [ "P19075-1", "NP_004607", "tetraspanin-8" ], [ "P19075-1", "NP_004607", "transmembrane 4 superfamily member 3; tumor-associated antigen CO-029; tspan-8" ], [ "Q96QE4-1", "NP_001308279", "leucine-rich repeat-containing protein 37B isoform 2" ], [ "Q96QE4-1", "NP_001308279", "leucine-rich repeat-containing protein 37B; C66 SLIT-like testicular protein" ], [ "Q99519-1", "NP_000425", "sialidase-1 precursor" ], [ "Q99519-1", "NP_000425", "exo-alpha-sialidase; lysosomal sialidase; N-acetyl-alpha-neuraminidase 1; acetylneuraminyl hydrolase; G9 sialidase; sialidase 1 (lysosomal sialidase)" ], [ "O15417-1", "NP_001073964", "trinucleotide repeat-containing gene 18 protein" ], [ "O15417-1", "NP_001073964", "long CAG trinucleotide repeat-containing gene 79 protein" ], [ "Q96RU7-1", "NP_001288117", "tribbles homolog 3 isoform 1" ], [ "Q96RU7-1", "NP_001288117", "p65-interacting inhibitor of NF-kappaB; neuronal cell death inducible putative kinase; TRB-3; p65-interacting inhibitor of NF-kappa-B; tribbles homolog 3" ], [ "Q96RU3-1", "NP_055848", "formin-binding protein 1 isoform 1" ], [ "Q96RU3-1", "NP_055848", "formin-binding protein 17" ], [ "Q96RU2-1", "NP_001333187", "ubiquitin carboxyl-terminal hydrolase 28 isoform h" ], [ "Q96RU2-1", "NP_001333187", "ubiquitin thioesterase 28; deubiquitinating enzyme 28; ubiquitin-specific-processing protease 28; ubiquitin thiolesterase 28" ], [ "Q01813-1", "NP_001310000", "ATP-dependent 6-phosphofructokinase, platelet type isoform 7" ], [ "Q01813-1", "NP_001310000", "6-phosphofructokinase type C; phosphohexokinase; phosphofructokinase 1; phosphofructo-1-kinase isozyme C; 6-phosphofructokinase, platelet type; ATP-dependent 6-phosphofructokinase, platelet type" ], [ "Q96RU8-1", "NP_001269914", "tribbles homolog 1 isoform 2" ], [ "Q96RU8-1", "NP_001269914", "G-protein-coupled receptor induced protein; phosphoprotein regulated by mitogenic pathways; tribbles-like protein 1; G-protein-coupled receptor-induced protein 2; G-protein-coupled receptor-induced gene 2 protein; tribbles homolog 1" ], [ "Q6ZRV2-1", "NP_940890", "protein FAM83H" ], [ "P16520-1", "NP_001284500", "guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 isoform 2" ], [ "P16520-1", "NP_001284500", "guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 3; GTP-binding regulatory protein beta-3 chain; transducin beta chain 3; G protein, beta-3 subunit; guanine nucleotide binding protein (G protein), beta polypeptide 3; hypertension associated protein; heterotrimeric guanine nucleotide-binding protein 2D" ], [ "Q8NCJ5-1", "NP_116229", "SPRY domain-containing protein 3" ], [ "Q9Y296-1", "NP_001305415", "trafficking protein particle complex subunit 4 isoform 2 precursor" ], [ "Q9Y296-1", "NP_001305415", "TRS23 homolog; hematopoietic stem/progenitor cell protein 172; trafficking protein particle complex 4" ], [ "Q9Y297-1", "NP_003930", "F-box/WD repeat-containing protein 1A isoform 2" ], [ "Q9Y297-1", "NP_003930", "beta-TrCP1; F-box/WD repeat-containing protein 1A; E3RSIkappaB; pIkappaBalpha-E3 receptor subunit; epididymis tissue protein Li 2a; F-box and WD repeats protein beta-TrCP; F-box and WD-repeat protein 1B" ], [ "Q9Y294-1", "NP_054753", "histone chaperone ASF1A" ], [ "Q9Y294-1", "NP_054753", "ASF1 anti-silencing function 1 homolog A; CCG1-interacting factor A; hCIA; hAsf1; hAsf1a; anti-silencing function protein 1 homolog A" ], [ "Q9Y295-1", "NP_004138", "developmentally-regulated GTP-binding protein 1" ], [ "Q9Y295-1", "NP_004138", "neural precursor cell expressed, developmentally down-regulated 3; DRG-1; NEDD-3; neural precursor cell expressed developmentally down-regulated protein 3; TRAFAC GTPase DRG1; translation factor GTPase DRG1" ], [ "Q6ICB4-1", "NP_001002034", "sesquipedalian-2" ], [ "Q6ICB4-1", "NP_001002034", "27 kDa inositol polyphosphate phosphatase interacting protein B; inositol polyphosphate phosphatase-interacting protein B; family with sequence similarity 109 member B" ], [ "Q6ICB0-1", "NP_056519", "desumoylating isopeptidase 1" ], [ "Q6ICB0-1", "NP_056519", "family with sequence similarity 152, member B; PPPDE peptidase domain-containing protein 2; PPPDE peptidase domain containing 2; desumoylating isopeptidase 2; polyubiquitinated substrate transporter" ], [ "P17693-1", "NP_002118", "HLA class I histocompatibility antigen, alpha chain G isoform 2 precursor" ], [ "P17693-1", "NP_002118", "HLA-G histocompatibility antigen, class I, G; HLA class I histocompatibility antigen, alpha chain G; b2 microglobulin; MHC class I antigen G; HLA G antigen; mutant MHC class I antigen; MHC class Ib antigen; mutant MHC class Ib antigen; MHC class I protein" ], [ "O00507-1", "NP_004645", "probable ubiquitin carboxyl-terminal hydrolase FAF-Y" ], [ "O00507-1", "NP_004645", "ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila); ubiquitin thiolesterase FAF-Y; ubiquitin-specific processing protease FAF-Y; deubiquitinating enzyme FAF-Y; ubiquitin thioesterase FAF-Y; fat facets protein-related, Y-linked; ubiquitin-specific protease 9, Y chromosome; azoospermia factor A" ], [ "O00505-1", "NP_002258", "importin subunit alpha-4" ], [ "O00505-1", "NP_002258", "importin alpha 4; importin subunit alpha-3; importin alpha-3; qip2; SRP1-gamma; importin alpha Q2; karyopherin alpha 3 (importin alpha 4)" ], [ "O00501-1", "NP_001124333", "claudin-5 isoform 1" ], [ "O00501-1", "NP_001124333", "transmembrane protein deleted in velocardiofacial syndrome; transmembrane protein deleted in VCFS" ], [ "O15033-1", "XP_006720407", "apoptosis-resistant E3 ubiquitin protein ligase 1 isoform X2" ], [ "Q8IYD2-1", "NP_001258792", "kelch domain-containing protein 8A" ], [ "Q8IYD2-1", "NP_001258792", "S-delta-E1; substitute for delta-EGFR expression 1" ], [ "Q8IYD1-1", "NP_060564", "eukaryotic peptide chain release factor GTP-binding subunit ERF3B" ], [ "Q8IYD1-1", "NP_060564", "eukaryotic peptide chain release factor subunit 3b" ], [ "Q8IYD9-1", "NP_001275910", "lung adenoma susceptibility protein 2 isoform a" ] ] }, "readme": "Name\n - Human Protein Names (NCBI RefSeq)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2020-03-15T13:26:46.282740\n\nModified on\n - 2022-09-26T09:05:27.635223\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Names (NCBI RefSeq) dataset contains human [taxid:9606] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein names\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_proteinnames_refseq.csv\n Name: human_protein_proteinnames_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_proteinnames_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18749\"\n Name: \"refseq_ac\"\n Description: \"Accession in the NCBI RefSeq database\"\n Unique Values: \"21440\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"38554\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_proteinnames_refseq.csv" }