{ "bcoid": "GLY_000372", "title": "HCV1a UniProtKB Xref PDB", "description": "The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref PDB contains hcv1a [taxid:11108] UniProtKB ...", "filename": "hcv1a_protein_xref_pdb.csv", "filetype": "csv", "categories": { "species": [ "Hepatitis C virus (genotype 1a, isolate H)" ], "molecule": [ "Protein" ], "tags": [ "Pdb cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P27958-1...", "protein_xref..." ], [ "P27958-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P27958-1", "protein_xref_pdb", "3RC4", "" ], [ "P27958-1", "protein_xref_pdb", "5JZI", "" ], [ "P27958-1", "protein_xref_pdb", "3RC5", "" ], [ "P27958-1", "protein_xref_pdb", "7DUU", "" ], [ "P27958-1", "protein_xref_pdb", "5YXN", "" ], [ "P27958-1", "protein_xref_pdb", "5YXU", "" ], [ "P27958-1", "protein_xref_pdb", "1A1R", "" ], [ "P27958-1", "protein_xref_pdb", "1A1V", "" ], [ "P27958-1", "protein_xref_pdb", "1CWX", "" ], [ "P27958-1", "protein_xref_pdb", "1HEI", "" ], [ "P27958-1", "protein_xref_pdb", "1JR6", "" ], [ "P27958-1", "protein_xref_pdb", "1N1L", "" ], [ "P27958-1", "protein_xref_pdb", "1ONB", "" ], [ "P27958-1", "protein_xref_pdb", "1R7C", "" ], [ "P27958-1", "protein_xref_pdb", "1R7D", "" ], [ "P27958-1", "protein_xref_pdb", "1R7E", "" ], [ "P27958-1", "protein_xref_pdb", "1R7F", "" ], [ "P27958-1", "protein_xref_pdb", "1R7G", "" ], [ "P27958-1", "protein_xref_pdb", "1RGQ", "" ], [ "P27958-1", "protein_xref_pdb", "2A4R", "" ], [ "P27958-1", "protein_xref_pdb", "2F9V", "" ], [ "P27958-1", "protein_xref_pdb", "2HD0", "" ], [ "P27958-1", "protein_xref_pdb", "2JXF", "" ], [ "P27958-1", "protein_xref_pdb", "2KDR", "" ], [ "P27958-1", "protein_xref_pdb", "2N1P", "" ], [ "P27958-1", "protein_xref_pdb", "2O8M", "" ], [ "P27958-1", "protein_xref_pdb", "2OBO", "" ], [ "P27958-1", "protein_xref_pdb", "2OBQ", "" ], [ "P27958-1", "protein_xref_pdb", "2OC0", "" ], [ "P27958-1", "protein_xref_pdb", "2OC1", "" ], [ "P27958-1", "protein_xref_pdb", "2OC7", "" ], [ "P27958-1", "protein_xref_pdb", "2OC8", "" ], [ "P27958-1", "protein_xref_pdb", "2OIN", "" ], [ "P27958-1", "protein_xref_pdb", "2P59", "" ], [ "P27958-1", "protein_xref_pdb", "2QV1", "" ], [ "P27958-1", "protein_xref_pdb", "2XI2", "" ], [ "P27958-1", "protein_xref_pdb", "2XI3", "" ], [ "P27958-1", "protein_xref_pdb", "2XNI", "" ], [ "P27958-1", "protein_xref_pdb", "4CL1", "" ], [ "P27958-1", "protein_xref_pdb", "4JZN", "" ], [ "P27958-1", "protein_xref_pdb", "4JZO", "" ], [ "P27958-1", "protein_xref_pdb", "4MWF", "" ], [ "P27958-1", "protein_xref_pdb", "4N0Y", "" ], [ "P27958-1", "protein_xref_pdb", "4Q0X", "" ], [ "P27958-1", "protein_xref_pdb", "4XVJ", "" ], [ "P27958-1", "protein_xref_pdb", "4Z0X", "" ], [ "P27958-1", "protein_xref_pdb", "5EOC", "" ], [ "P27958-1", "protein_xref_pdb", "5ERW", "" ], [ "P27958-1", "protein_xref_pdb", "5FGB", "" ], [ "P27958-1", "protein_xref_pdb", "5FGC", "" ], [ "P27958-1", "protein_xref_pdb", "6BQJ", "" ], [ "P27958-1", "protein_xref_pdb", "6BQK", "" ], [ "P27958-1", "protein_xref_pdb", "6BZU", "" ], [ "P27958-1", "protein_xref_pdb", "6BZV", "" ], [ "P27958-1", "protein_xref_pdb", "6BZW", "" ], [ "P27958-1", "protein_xref_pdb", "6BZY", "" ], [ "P27958-1", "protein_xref_pdb", "6UYD", "" ], [ "P27958-1", "protein_xref_pdb", "6WO5", "" ], [ "P27958-1", "protein_xref_pdb", "6WOQ", "" ] ] }, "readme": "Name\n - HCV1a UniProtKB Xref PDB\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2020-03-14T17:38:53.233399\n\nModified on\n - 2022-09-26T09:05:27.708538\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref PDB contains hcv1a [taxid:11108] UniProtKB canonical accessions cross-referenced to PDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The Protein Data Bank is a database for the three-dimensional structural data of large biological molecules, such as proteins and nucleic acids.\n\nDescription Domain\n Keywords\n - protein 3D structure\n - RCSB PDB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to RCSB PDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-hepatitis-c-virus-1a.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-hepatitis-c-virus-1a.nt\n Output Subdomain\n Name: hcv1a_protein_xref_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/hcv1a_protein_xref_pdb.csv\n Name: hcv1a_protein_xref_pdb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/hcv1a_protein_xref_pdb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"59\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/hcv1a_protein_xref_pdb.csv" }