{ "bcoid": "GLY_000309", "title": "Synthesized glycans", "description": "The dataset lists the synthesized glycans which are identified by the the GlyTouCan accessions. Source:- ...", "filename": "glycan_synthesized.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tags": [ "synthesized Glycan" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Rattus", "Rattus norvegicus", "Drosophila melanogaster" ] }, "minitable": { "content": [ [ "G01361CV...", "synthesized ..." ], [ "G01361CV...", "synthesized ..." ] ], "headers": [ "glytoucan_ac...", "tag..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "tag" }, { "type": "string", "label": "evidence" }, { "type": "string", "label": "source" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" } ], [ "G01361CV", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G01361CV", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G01659IT", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G01659IT", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G07822HH", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G07822HH", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G09415JG", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G09415JG", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G10422IZ", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G10422IZ", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G14589ZB", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G14589ZB", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G18059CR", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G18059CR", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G19289JN", "synthesized glycan", "22334653", "The Boons Group (UGA)", "glycan_xref_pubmed", "22334653" ], [ "G19289JN", "synthesized glycan", "22334653", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G25956VZ", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G25956VZ", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G29024OJ", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G29024OJ", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G29695SR", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G29695SR", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G35033DR", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G35033DR", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G44219AA", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G44219AA", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G45354TV", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G45354TV", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G47809QP", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G47809QP", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G47922TD", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G47922TD", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G53567BY", "synthesized glycan", "28167527", "The Boons Group (UGA)", "glycan_xref_pubmed", "28167527" ], [ "G53567BY", "synthesized glycan", "28167527", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G53567BY", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G53567BY", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G55763HW", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G55763HW", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G63053GR", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G63053GR", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G64936OS", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G64936OS", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G65345NM", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G65345NM", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G65356DX", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G65356DX", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G65984FE", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G65984FE", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G66044FT", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G66044FT", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G66685CE", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G66685CE", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G73866ZM", "synthesized glycan", "9133639", "The Boons Group (UGA)", "glycan_xref_pubmed", "9133639" ], [ "G73866ZM", "synthesized glycan", "9133639", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G79420BT", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G79420BT", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G81578NL", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G81578NL", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G83916HL", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G83916HL", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G84526ST", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G84526ST", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G87373RB", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G87373RB", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G90411BS", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_pubmed", "28630345" ], [ "G90411BS", "synthesized glycan", "28630345", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G96677EZ", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G96677EZ", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G97109LT", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_pubmed", "30532014" ], [ "G97109LT", "synthesized glycan", "30532014", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G25869ML", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_pubmed", "31108002" ], [ "G25869ML", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G35749EP", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_pubmed", "31108002" ], [ "G35749EP", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G42113HJ", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_pubmed", "31108002" ], [ "G42113HJ", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G64022EC", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_pubmed", "31108002" ], [ "G64022EC", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G84792SV", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_pubmed", "31108002" ], [ "G84792SV", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G92147QP", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_pubmed", "31108002" ], [ "G92147QP", "synthesized glycan", "31108002", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ], [ "G23290TL", "synthesized glycan", "30792508", "The Boons Group (UGA)", "glycan_xref_pubmed", "30792508" ], [ "G23290TL", "synthesized glycan", "30792508", "The Boons Group (UGA)", "glycan_xref_glygen_ds", "GLY_000309" ] ] }, "readme": "Name\n - Synthesized glycans\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-11-14T15:24:17.374565\n\nModified on\n - 2022-09-26T09:05:27.718160\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Gerardus JOSEPHUS Boons [gjboons@ccrc.uga.edu], Lin Liu [linliu@ccrc.uga.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset lists the synthesized glycans which are identified by the the GlyTouCan accessions. Source:- The Boons Group. https://www.ccrc.uga.edu/~gjboons/boons/Home.htm()\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Synthesized Glycan\n - ID/Accession Mapping\n\n Pipeline Steps\n - Step-1: Authors provided figures for fully-defined glycan strutures (images) long with the associated publication (PubMed ID). Based on the images, the glycans were mapped or registered in the GlyTouCan database manually. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_synthesized.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/compiled/glycan_synthesized.csv\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_masterlist.csv\n Output Subdomain\n Name: glycan_synthesized.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_synthesized.csv\n Name: glycan_synthesized.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_synthesized.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"84\"\n Name: \"tag\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"evidence\"\n Description: \"NCBI PubMed Id (PMID) or DOI (Digital Object Identifier) as evidence for the entry/annotation\"\n Unique Values: \"10\"\n Name: \"source\"\n Description: \"Source for the data\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"11\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/glycan_synthesized.csv" }