{ "bcoid": "GLY_000264", "title": "Rat Protein Citations (RefSeq)", "description": "The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to ...", "filename": "rat_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tags": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P31392-1...", "Effects of a..." ], [ "D3ZS29-1...", "TNF-alpha up..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P31392-1", "Effects of adrenomedullin on the glomerular adrenomedullin system in a rat model of anti-thy1 glomerulonephritis.", "Nephron. Experimental nephrology", "2010", "Geissler B, Plank C, Hartner A, Amann K, Struwe FG, Hilgers KF, Rascher W, Dotsch J", "protein_xref_pubmed", "20431304", "protein_xref_refseq", "NP_445754" ], [ "D3ZS29-1", "TNF-alpha up-regulates Nanog by activating NF-kappaB pathway to induce primary rat spinal cord astrocytes dedifferentiation.", "Life sciences", "2021 Dec 15", "Ding Z, Dai C, Shan W, Liu R, Lu W, Gao W, Zhang H, Huang W, Guan J, Yin Z", "protein_xref_pubmed", "34758295", "protein_xref_refseq", "NP_001094251" ], [ "B1H259-1", "Ultrastructural co-localization of cochlin and type II collagen in the rat semicircular canal.", "Neuroscience letters", "2008 Mar 21", "Mizuta K, Ikezono T, Iwasaki S, Arai M, Hashimoto Y, Pawankar R, Watanabe T, Shindo S, Mineta H", "protein_xref_pubmed", "18304733", "protein_xref_refseq", "NP_001102180" ], [ "Q9QYK2-1", "The coactivator PGC-1 is involved in the regulation of the liver carnitine palmitoyltransferase I gene expression by cAMP in combination with HNF4 alpha and cAMP-response element-binding protein (CREB).", "The Journal of biological chemistry", "2002 Oct 11", "Louet JF, Hayhurst G, Gonzalez FJ, Girard J, Decaux JF", "protein_xref_pubmed", "12107181", "protein_xref_refseq", "NP_112637" ], [ "Q99P85-1", "Hypoxia-Induced Mitogenic Factor Acts as a Nonclassical Ligand of Calcium-Sensing Receptor, Therapeutically Exploitable for Intermittent Hypoxia-Induced Pulmonary Hypertension.", "Hypertension (Dallas, Tex. : 1979)", "2017 May", "Zeng X, Zhu L, Xiao R, Liu B, Sun M, Liu F, Hao Q, Lu Y, Zhang J, Li J, Wang T, Wei X, Hu Q", "protein_xref_pubmed", "28348014", "protein_xref_refseq", "NP_445785" ], [ "P19491-1", "Mechanisms underlying TARP modulation of the GluA1/2-gamma8 AMPA receptor.", "Nature communications", "2022 Feb 8", "Herguedas B, Kohegyi BK, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh SA, Lape R, Krieger JM, Greger IH", "protein_xref_pubmed", "35136046", "protein_xref_refseq", "NP_001077280" ], [ "Q03351-1", "P75NTR Exacerbates SCI-induced Mitochondrial Damage and Neuronal Apoptosis Depending on NTRK3.", "Current neurovascular research", "2021", "Tan W, Dong L, Shi X, Tang Q, Jiang D", "protein_xref_pubmed", "34970951", "protein_xref_refseq", "NP_001257584" ], [ "P56932-1", "The protein phosphatase 2A regulatory subunits B'beta and B'delta mediate sustained TrkA neurotrophin receptor autophosphorylation and neuronal differentiation.", "Molecular and cellular biology", "2009 Feb", "Van Kanegan MJ, Strack S", "protein_xref_pubmed", "19029245", "protein_xref_refseq", "NP_653347" ], [ "Q6DGF8-1", "Expression of new loci associated with obesity in diet-induced obese rats: from genetics to physiology.", "Obesity (Silver Spring, Md.)", "2012 Feb", "Gutierrez-Aguilar R, Kim DH, Woods SC, Seeley RJ", "protein_xref_pubmed", "21779089", "protein_xref_refseq", "NP_001007749" ], [ "Q6AYR4-1", "Anti-salusin-beta antibody enhances angiogenesis after myocardial ischemia reperfusion injury.", "Expert opinion on therapeutic targets", "2013 Sep", "Masumura M, Watanabe R, Nagashima A, Ogawa M, Suzuki J, Shichiri M, Komuro I, Isobe M", "protein_xref_pubmed", "23865521", "protein_xref_refseq", "NP_001007745" ], [ "Q641Y5-1", "ATG7-enhanced impaired autophagy exacerbates acute pancreatitis by promoting regulated necrosis via the miR-30b-5p/CAMKII pathway.", "Cell death & disease", "2022 Mar 7", "Ji L, Wang ZH, Zhang YH, Zhou Y, Tang DS, Yan CS, Ma JM, Fang K, Gao L, Ren NS, Cheng L, Guo XY, Sun B, Wang G", "protein_xref_pubmed", "35256590", "protein_xref_refseq", "NP_001012097" ], [ "P51577-1", "P2X4 Inhibition reduces microglia inflammation and apoptosis by NLRP3 and improves nervous system defects in rat brain trauma model.", "Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia", "2022 May", "He W, Wang Q, Sha W, Wang L, Li D, Chen G", "protein_xref_pubmed", "35290938", "protein_xref_refseq", "NP_113782" ], [ "D4ABK7-1", "hnRNP H and hnRNP F complex with Fox2 to silence fibroblast growth factor receptor 2 exon IIIc.", "Molecular and cellular biology", "2008 Sep", "Mauger DM, Lin C, Garcia-Blanco MA", "protein_xref_pubmed", "18573884", "protein_xref_refseq", "NP_001102002" ], [ "O08878-1", "Effects of estrogen receptor \u03b2 or G protein-coupled receptor 30 activation on anxiety-like behaviors in relation to GABAergic transmission in stress-ovariectomized rats.", "Neuroscience letters", "2022-10-15", "Tongta Sushawadee, Daendee Suwaporn, Kalandakanond-Thongsong Sarinee", "protein_xref_pubmed", "36152742", "protein_xref_refseq", "NP_598257" ], [ "P04176-1", "Domain Movements upon Activation of Phenylalanine Hydroxylase Characterized by Crystallography and Chromatography-Coupled Small-Angle X-ray Scattering.", "Journal of the American Chemical Society", "2016 May 25", "Meisburger SP, Taylor AB, Khan CA, Zhang S, Fitzpatrick PF, Ando N", "protein_xref_pubmed", "27145334", "protein_xref_refseq", "NP_036751" ], [ "Q6MGB4-1", "Hyperglycemia-Induced Changes in ZIP7 and ZnT7 Expression Cause Zn(2+) Release From the Sarco(endo)plasmic Reticulum and Mediate ER Stress in the Heart.", "Diabetes", "2017 May", "Tuncay E, Bitirim VC, Durak A, Carrat GRJ, Taylor KM, Rutter GA, Turan B", "protein_xref_pubmed", "28232492", "protein_xref_refseq", "NP_001008885" ], [ "P62836-1", "miR-202 modulates the progression of neuropathic pain through targeting RAP1A.", "Journal of cellular biochemistry", "2019 Mar", "Fang B, Wei L, Dong K, Niu X, Sui X, Zhang H", "protein_xref_pubmed", "30520098", "protein_xref_refseq", "NP_001005765" ], [ "P63149-1", "Upregulation of ubiquitin conjugating enzyme E2B (Ube2b) ameliorates neuropathic pain by regulating Kcna2 (potassium voltage-gated channel subfamily A member 2) in primary afferent neurons.", "Bioengineered", "2021 Dec", "Peng Y, Zhang Q, Cheng H, Yan G, Xing C", "protein_xref_pubmed", "34632937", "protein_xref_refseq", "NP_112400" ], [ "P01230-1", "In vivo oestrogenic modulation of Egr1 and Pitx1 gene expression in female rat pituitary gland.", "Journal of molecular endocrinology", "2014 Dec", "Gajewska A, Herman AP, Wolinska-Witort E, Kochman K, Zwierzchowski L", "protein_xref_pubmed", "25258388", "protein_xref_refseq", "NP_001029147" ], [ "O70196-1", "Inhibition of Prolyl Oligopeptidase Restores Prohibitin 2 Levels in Psychosis Models: Relationship to Cognitive Deficits in Schizophrenia.", "International journal of molecular sciences", "2023-03-23", "Vila \u00c8lia, Pinacho Raquel, Prades Roger, Tarrag\u00f3 Teresa, Castro Elena, Munarriz-Cuezva Eva, Meana J Javier, Eugui-Anta Ania, Roldan M\u00f2nica, Vera-Montecinos Am\u00e9rica, Ramos Bel\u00e9n", "protein_xref_pubmed", "37046989", "protein_xref_refseq", "NP_112614" ], [ "C0LP03-1", "HMGB1 Activates Proinflammatory Signaling via TLR5 Leading to Allodynia.", "Cell reports", "2016 Oct 18", "Das N, Dewan V, Grace PM, Gunn RJ, Tamura R, Tzarum N, Watkins LR, Wilson IA, Yin H", "protein_xref_pubmed", "27760316", "protein_xref_refseq", "NP_001139300" ], [ "Q923Y2-1", "Expression of trace amine-associated receptors in the Grueneberg ganglion.", "Chemical senses", "2007 Jul", "Fleischer J, Schwarzenbacher K, Breer H", "protein_xref_pubmed", "17556730", "protein_xref_refseq", "NP_783175" ], [ "D4AE24-1", "Protein kinase Calpha is implicated in cholecystokinin-induced activation of 70-kd S6 kinase in AR42J cells.", "Pancreas", "2005 Jan", "Yutsudo Y, Kido Y, Okabayashi Y, Matsumoto M, Ogawa W, Ohba M, Kuroki T, Kasuga M", "protein_xref_pubmed", "15632699", "protein_xref_refseq", "NP_001010962" ], [ "P26255-1", "Opposite Effects of Voluntary Physical Exercise on beta3-Adrenergic Receptors in the White and Brown Adipose Tissue.", "Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme", "2019 Sep", "Balagova L, Graban J, Puhova A, Jezova D", "protein_xref_pubmed", "31295748", "protein_xref_refseq", "NP_037240" ], [ "P14669-1", "Regulation of total LC3 levels by angiotensin II in vascular smooth muscle cells.", "Journal of cellular and molecular medicine", "2022 Mar", "Mondaca-Ruff D, Quiroga C, Norambuena-Soto I, Riquelme JA, San Martin A, Bustamante M, Lavandero S, Chiong M", "protein_xref_pubmed", "35118791", "protein_xref_refseq", "NP_036955" ], [ "O35552-1", "[Sleep deprivation aggravates cognitive impairment in septic rats by activating neuronal glycolytic isoenzyme PFKFB3].", "Zhonghua wei zhong bing ji jiu yi xue", "2023 Mar", "Liu Y, Yao P, Song Y, Wang X, Wang X", "protein_xref_pubmed", "36916342", "protein_xref_refseq", "NP_476476" ], [ "P35284-1", "Rab12 Regulates Retrograde Transport of Mast Cell Secretory Granules by Interacting with the RILP-Dynein Complex.", "Journal of immunology (Baltimore, Md. : 1950)", "2016 Feb 1", "Efergan A, Azouz NP, Klein O, Noguchi K, Rothenberg ME, Fukuda M, Sagi-Eisenberg R", "protein_xref_pubmed", "26740112", "protein_xref_refseq", "NP_037149" ], [ "P56478-1", "TCR and IL-7 Signaling Are Altered in the Absence of Functional GTPase of the Immune Associated Nucleotide Binding Protein 5 (GIMAP5).", "PloS one", "2016", "Chen XL, Serrano D, Ghobadi F, Mayhue M, Hoebe K, Ilangumaran S, Ramanathan S", "protein_xref_pubmed", "27023180", "protein_xref_refseq", "NP_037242" ], [ "P43118-1", "Role of the prostanoid FP receptor in action potential generation and phenotypic transformation of NRK fibroblasts.", "Cellular signalling", "2008 Nov", "Almirza WH, Dernison MM, Peters PH, van Zoelen EJ, Theuvenet AP", "protein_xref_pubmed", "18703136", "protein_xref_refseq", "NP_037247" ], [ "P63039-1", "Heat Shock Protein HSP60 in Left Ventricular Cardiomyocytes of Hypertensive Rats with and without Insulin-Dependent Diabetes Mellitus.", "Bulletin of experimental biology and medicine", "2020 Nov", "Blagonravov ML, Sklifasovskaya AP, Korshunova AY, Azova MM, Kurlaeva AO", "protein_xref_pubmed", "33219889", "protein_xref_refseq", "NP_071565" ], [ "Q9Z336-1", "MAP4 mechanism that stabilizes mitochondrial permeability transition in hypoxia: microtubule enhancement and DYNLT1 interaction with VDAC1.", "PloS one", "2011", "Fang YD, Xu X, Dang YM, Zhang YM, Zhang JP, Hu JY, Zhang Q, Dai X, Teng M, Zhang DX, Huang YS", "protein_xref_pubmed", "22164227", "protein_xref_refseq", "NP_112608" ], [ "Q8R2H2-1", "Role of miR-223-3p in pulmonary arterial hypertension via targeting ITGB3 in the ECM pathway.", "Cell proliferation", "2019 Mar", "Liu A, Liu Y, Li B, Yang M, Liu Y, Su J", "protein_xref_pubmed", "30507047", "protein_xref_refseq", "NP_714942" ], [ "Q63634-1", "The identification of neuropeptide Y receptor subtype involved in phenylpropanolamine-induced increase in oxidative stress and appetite suppression.", "Neuromolecular medicine", "2013 Mar", "Hsieh YS, Kuo MH, Chen PN, Kuo DY", "protein_xref_pubmed", "23179670", "protein_xref_refseq", "NP_037001" ], [ "P10868-1", "Mild guanidinoacetate increase under partial guanidinoacetate methyltransferase deficiency strongly affects brain cell development.", "Neurobiology of disease", "2015 Jul", "Hanna-El-Daher L, Beard E, Henry H, Tenenbaum L, Braissant O", "protein_xref_pubmed", "25896543", "protein_xref_refseq", "NP_036925" ], [ "P27615-1", "The NH(2)-terminal transmembrane and lumenal domains of LGP85 are needed for the formation of enlarged endosomes/lysosomes.", "Traffic (Copenhagen, Denmark)", "2005 Oct", "Kuronita T, Hatano T, Furuyama A, Hirota Y, Masuyama N, Saftig P, Himeno M, Fujita H, Tanaka Y", "protein_xref_pubmed", "16138903", "protein_xref_refseq", "NP_446453" ], [ "Q6IRJ7-1", "Annexin A7 and SNAP23 interactions in alveolar type II cells and in vitro: a role for Ca(2+) and PKC.", "Biochimica et biophysica acta", "2012 Oct", "Gerelsaikhan T, Vasa PK, Chander A", "protein_xref_pubmed", "22713544", "protein_xref_refseq", "NP_569100" ], [ "Q6RI86-1", "Mustard oils and cannabinoids excite sensory nerve fibres through the TRP channel ANKTM1.", "Nature", "2004 Jan 15", "Jordt SE, Bautista DM, Chuang HH, McKemy DD, Zygmunt PM, Hogestatt ED, Meng ID, Julius D", "protein_xref_pubmed", "14712238", "protein_xref_refseq", "NP_997491" ], [ "Q6XVN8-1", "Scanning Electron-Assisted Dielectric Microscopy Reveals Autophagosome Formation by LC3 and ATG12 in Cultured Mammalian Cells.", "International journal of molecular sciences", "2021 Feb 12", "Okada T, Ogura T", "protein_xref_pubmed", "33673233", "protein_xref_refseq", "NP_955794" ], [ "Q62795-1", "Postnatal development of the glutamate vesicular transporter VGLUT1 in rat cerebral cortex.", "Brain research. Developmental brain research", "2003 Feb 16", "Minelli A, Edwards RH, Manzoni T, Conti F", "protein_xref_pubmed", "12586437", "protein_xref_refseq", "NP_598238" ], [ "P97526-1", "The neurofibromatosis type I gene promotes autophagy via mTORC1 signalling pathway to enhance new bone formation after fracture.", "Journal of cellular and molecular medicine", "2020 Oct", "Tan Q, Wu JY, Liu YX, Liu K, Tang J, Ye WH, Zhu GH, Mei HB, Yang G", "protein_xref_pubmed", "32862562", "protein_xref_refseq", "NP_036741" ], [ "F1M3F2-1", "Inhibition of Smurf2 translation by miR-322/503 protects from ischemia-reperfusion injury by modulating EZH2/Akt/GSK3beta signaling.", "American journal of physiology. Cell physiology", "2019 Aug 1", "Dong W, Xie F, Chen XY, Huang WL, Zhang YZ, Luo WB, Chen J, Xie MT, Peng XP", "protein_xref_pubmed", "30649914", "protein_xref_refseq", "NP_001100531" ], [ "P25095-1", "Characterization of Type 1 Angiotensin II Receptor Activation Induced Dual-Specificity MAPK Phosphatase Gene Expression Changes in Rat Vascular Smooth Muscle Cells.", "Cells", "2021 Dec 15", "Gem JB, Kovacs KB, Szalai L, Szakadati G, Porkolab E, Szalai B, Turu G, Toth AD, Szekeres M, Hunyady L, Balla A", "protein_xref_pubmed", "34944046", "protein_xref_refseq", "NP_112247" ], [ "Q08406-1", "The modulatory effects of luteolin on cyclic AMP/Ciliary neurotrophic factor signaling pathway in experimentally induced autoimmune encephalomyelitis.", "IUBMB life", "2019 Sep", "El-Deeb OS, Ghanem HB, El-Esawy RO, Sadek MT", "protein_xref_pubmed", "31185137", "protein_xref_refseq", "NP_001003929" ], [ "Q8CF82-1", "Cloning of human and rat ABCA5/Abca5 and detection of a human splice variant.", "Biochemical and biophysical research communications", "2003 Jan 10", "Petry F, Kotthaus A, Hirsch-Ernst KI", "protein_xref_pubmed", "12504089", "protein_xref_refseq", "NP_775429" ], [ "Q7TNI4-1", "IL-22RA2 associates with multiple sclerosis and macrophage effector mechanisms in experimental neuroinflammation.", "Journal of immunology (Baltimore, Md. : 1950)", "2010 Dec 1", "Beyeen AD, Adzemovic MZ, Ockinger J, Stridh P, Becanovic K, Laaksonen H, Lassmann H, Harris RA, Hillert J, Alfredsson L, Celius EG, Harbo HF, Kockum I, Jagodic M, Olsson T", "protein_xref_pubmed", "21041731", "protein_xref_refseq", "NP_001003404" ], [ "D3Z9H7-1", "Involvement of calcineurin/NFATc4 pathway in a single-prolonged stress-based rat model of post-traumatic stress disorder.", "Molecular biology reports", "2019 Dec", "Su Q, Liu M, Jiang M, Wang Y, Ma X, Li S, Xie J", "protein_xref_pubmed", "31486013", "protein_xref_refseq", "NP_001100734" ], [ "P12711-1", "Analysis of mammalian alcohol dehydrogenase 5 (ADH5): characterisation of rat ADH5 with comparisons to the corresponding human variant.", "Chemico-biological interactions", "2013 Feb 25", "Ostberg LJ, Stromberg P, Hedberg JJ, Persson B, Hoog JO", "protein_xref_pubmed", "23159888", "protein_xref_refseq", "NP_001119592" ], [ "P60517-1", "Interaction of Bcl-2 with the autophagy-related GABAA receptor-associated protein (GABARAP): biophysical characterization and functional implications.", "The Journal of biological chemistry", "2013 Dec 27", "Ma P, Schwarten M, Schneider L, Boeske A, Henke N, Lisak D, Weber S, Mohrluder J, Stoldt M, Strodel B, Methner A, Hoffmann S, Weiergraber OH, Willbold D", "protein_xref_pubmed", "24240096", "protein_xref_refseq", "NP_742033" ], [ "Q8K3E7-1", "A role of histone H3 lysine 4 methyltransferase components in endosomal trafficking.", "The Journal of cell biology", "2009 Aug 10", "Xu Z, Gong Q, Xia B, Groves B, Zimmermann M, Mugler C, Mu D, Matsumoto B, Seaman M, Ma D", "protein_xref_pubmed", "19651892", "protein_xref_refseq", "NP_775140" ], [ "Q9WUB5-1", "NCoR negatively regulates adipogenic differentiation of mesenchymal stem cells.", "In vitro cellular & developmental biology. Animal", "2015 Aug", "Hong-Wei G, Lan L, De-Guo X, Zhong-Hao L, Peng R, Zhi-Qiang L, Guo-Qiang S, Ming-Zhi G", "protein_xref_pubmed", "26019118", "protein_xref_refseq", "NP_001258032" ], [ "Q03114-1", "Cdk5 mediates rotational force-induced brain injury.", "Scientific reports", "2023-02-28", "Umfress Alan, Chakraborti Ayanabha, Priya Sudarsana Devi Suma, Adams Raegan, Epstein Daniel, Massicano Adriana, Sorace Anna, Singh Sarbjit, Iqbal Hossian M, Andrabi Shaida A, Crossman David K, Kumar Nilesh, Shahid Mukhtar M, Luo Huiyang, Simpson Claire, Abell Kathryn, Stokes Matthew, Wiederhold Thorsten, Rosen Charles, Lu Hongbing, Natarajan Amarnath, Bibb James A", "protein_xref_pubmed", "36854738", "protein_xref_refseq", "NP_543161" ], [ "Q63099-1", "Control of voltage-gated potassium channel Kv2.2 expression by pyruvate-isocitrate cycling regulates glucose-stimulated insulin secretion.", "The Journal of biological chemistry", "2013 Aug 9", "Jensen MV, Haldeman JM, Zhang H, Lu D, Huising MO, Vale WW, Hohmeier HE, Rosenberg P, Newgard CB", "protein_xref_pubmed", "23788641", "protein_xref_refseq", "NP_446452" ], [ "A0A8I6G8L9-1", "Interaction between the transcriptional corepressor Sin3B and voltage-gated sodium channels modulates functional channel expression.", "Scientific reports", "2013 Sep 30", "Vega AV, Avila G, Matthews G", "protein_xref_pubmed", "24077057", "protein_xref_refseq", "NP_001108510" ], [ "P47196-1", "The protective role of hippocampal LRP1 knockdown involves synaptic plasticity through the promoting microtubule dynamics and activation of Akt/GSK-3\u03b2 pathway in depressive rats.", "Journal of affective disorders", "2023-02-01", "Wang Hui, Liang Liang, Yang Can, Xiao Ling, Wang Huiling, Wang Gaohua, Zhu Zhixian", "protein_xref_pubmed", "36372121", "protein_xref_refseq", "NP_150233" ], [ "Q66H70-1", "Red nucleus IL-33 facilitates the early development of mononeuropathic pain in male rats by inducing TNF-alpha through activating ERK, p38 MAPK, and JAK2/STAT3.", "Journal of neuroinflammation", "2021 Jul 5", "Li HN, Yang QQ, Wang WT, Tian X, Feng F, Zhang ST, Xia YT, Wang JX, Zou YW, Wang JY, Zeng XY", "protein_xref_pubmed", "34225736", "protein_xref_refseq", "NP_001014188" ], [ "P23680-1", "Serum amyloid P component induces neuronal apoptosis and beta-amyloid immunoreactivity.", "Brain research", "2003 Oct 24", "Urbanyi Z, Laszlo L, Tomasi TB, Toth E, Mekes E, Sass M, Pazmany T", "protein_xref_pubmed", "14519527", "protein_xref_refseq", "NP_058866" ], [ "A0A8I6A0F8-1", "Differentially expressed microRNAs during the differentiation of muscle-derived stem cells into insulin-producing cells, a promoting role of microRNA-708-5p/STK4 axis.", "PloS one", "2022", "Ren Y, Wang X, Liang H, Ma Y", "protein_xref_pubmed", "35395037", "protein_xref_refseq", "NP_001101270" ], [ "P62494-1", "Characterization of Heparan Sulfate Proteoglycan-positive Recycling Endosomes Isolated from Glioma Cells.", "Cancer genomics & proteomics", "2016 11-12", "Podyma-Inoue KA, Moriwaki T, Rajapakshe AR, Terasawa K, Hara-Yokoyama M", "protein_xref_pubmed", "27807067", "protein_xref_refseq", "NP_112414" ], [ "P36970-1", "The RNA-binding protein SND1 promotes the degradation of GPX4 by destabilizing the HSPA5 mRNA and suppressing HSPA5 expression, promoting ferroptosis in osteoarthritis chondrocytes.", "Inflammation research : official journal of the European Histamine Research Society ... [et al.]", "2022 Apr", "Lv M, Cai Y, Hou W, Peng K, Xu K, Lu C, Yu W, Zhang W, Liu L", "protein_xref_pubmed", "35320827", "protein_xref_refseq", "NP_001034938" ], [ "A0A8I5ZN89-1", "Immunolocalization of glutaryl-CoA dehydrogenase (GCDH) in adult and embryonic rat brain and peripheral tissues.", "Neuroscience", "2017 Feb 20", "Braissant O, Jafari P, Remacle N, Cudre-Cung HP, Do Vale Pereira S, Ballhausen D", "protein_xref_pubmed", "27984186", "protein_xref_refseq", "NP_001102366" ], [ "Q920E1-1", "Protease-activated receptor subtype expression in developing eye and adult retina of the rat after optic nerve crush.", "Journal of neuroscience research", "2003 Jul 15", "Rohatgi T, Sedehizade F, Sabel BA, Reiser G", "protein_xref_pubmed", "12836167", "protein_xref_refseq", "NP_445765" ], [ "Q920L6-1", "Modulation of palmitate-induced endoplasmic reticulum stress and apoptosis in pancreatic beta-cells by stearoyl-CoA desaturase and Elovl6.", "American journal of physiology. Endocrinology and metabolism", "2011 Apr", "Green CD, Olson LK", "protein_xref_pubmed", "21266672", "protein_xref_refseq", "NP_599210" ], [ "Q9WVI4-1", "Involvement of soluble guanylate cyclase alpha(1) and alpha(2), and SK(Ca) channels in NANC relaxation of mouse distal colon.", "European journal of pharmacology", "2008 Jul 28", "Dhaese I, Vanneste G, Sips P, Buys E, Brouckaert P, Lefebvre RA", "protein_xref_pubmed", "18572161", "protein_xref_refseq", "NP_076446" ], [ "Q9ES67-1", "Ethanol increases the activity of rat excitatory amino acid transporter type 4 expressed in Xenopus oocytes: role of protein kinase C and phosphatidylinositol 3-kinase.", "Alcoholism, clinical and experimental research", "2008 Feb", "Park HY, Kim JH, Zuo Z, Do SH", "protein_xref_pubmed", "18226120", "protein_xref_refseq", "NP_076472" ], [ "Q5HZY2-1", "Sar1 translocation onto the ER-membrane for vesicle budding has different pathways for promotion and suppression of ER-to-Golgi transport mediated through H89-sensitive kinase and ER-resident G protein.", "Molecular and cellular biochemistry", "2012 Jul", "Nakagawa H, Ishizaki M, Miyazaki S, Abe T, Nishimura K, Komori M, Matsuo S", "protein_xref_pubmed", "22484643", "protein_xref_refseq", "NP_001009622" ], [ "P48679-1", "Lamin A/C mutation associated with lipodystrophy influences adipogenic differentiation of stem cells through interaction with Notch signaling.", "Biochemistry and cell biology = Biochimie et biologie cellulaire", "2018 Jun", "Perepelina K, Dmitrieva R, Ignatieva E, Borodkina A, Kostareva A, Malashicheva A", "protein_xref_pubmed", "29040816", "protein_xref_refseq", "NP_001002016" ], [ "O35179-1", "Endophilin A2 protects H2O2-induced apoptosis by blockade of Bax translocation in rat basilar artery smooth muscle cells.", "Journal of molecular and cellular cardiology", "2016 Mar", "Liu Y, Gao M, Ma MM, Tang YB, Zhou JG, Wang GL, Du YH, Guan YY", "protein_xref_pubmed", "26854628", "protein_xref_refseq", "NP_446387" ], [ "Q63604-1", "Enhanced BDNF and TrkB Activation Enhance GABA Neurotransmission in Cerebellum in Hyperammonemia.", "International journal of molecular sciences", "2022-10-04", "Arenas Yaiza M, Mart\u00ednez-Garc\u00eda Mar, Llansola Marta, Felipo Vicente", "protein_xref_pubmed", "36233065", "protein_xref_refseq", "NP_001156640" ], [ "Q91ZF1-1", "Inhibition of glucose-stimulated insulin secretion by KCNJ15, a newly identified susceptibility gene for type 2 diabetes.", "Diabetes", "2012 Jul", "Okamoto K, Iwasaki N, Doi K, Noiri E, Iwamoto Y, Uchigata Y, Fujita T, Tokunaga K", "protein_xref_pubmed", "22566534", "protein_xref_refseq", "NP_579855" ], [ "P43219-1", "Expression of glucose-dependent insulinotropic polypeptide and its receptor in the rat major salivary glands.", "Acta histochemica", "2014 May", "Privatananupunt J, Watari I, Podyma-Inoue KA, Kubono M, Ono T", "protein_xref_pubmed", "24360021", "protein_xref_refseq", "NP_036846" ], [ "P20294-1", "Ciliary Neurotrophic Factor (CNTF) Protects Myocardial Cells from Oxygen Glucose Deprivation (OGD)/Re-Oxygenation via Activation of Akt-Nrf2 Signaling.", "Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology", "2018", "Zheng K, Zhang Q, Sheng Z, Li Y, Lu HH", "protein_xref_pubmed", "30504707", "protein_xref_refseq", "NP_037298" ], [ "D4A4E8-1", "Suppression of tumor suppressor Tsc2 and DNA repair glycosylase Nth1 during spontaneous liver tumorigenesis in Long-Evans Cinnamon rats.", "Molecular and cellular biochemistry", "2010 May", "Sajankila SP, Manthena PV, Adhikari S, Choudhury S, Izumi K, Roy R", "protein_xref_pubmed", "20033472", "protein_xref_refseq", "NP_001099198" ], [ "Q811Q5-1", "Cyclic AMP signalling through PKA but not Epac is essential for neurturin-induced biphasic ERK1/2 activation and neurite outgrowths through GFRalpha2 isoforms.", "Cellular signalling", "2011 Nov", "Wan G, Zhou L, Lim Q', Wong YH, Too HP", "protein_xref_pubmed", "21723942", "protein_xref_refseq", "NP_445851" ], [ "P85834-1", "Identification of mitochondria translation elongation factor Tu as a contributor to oxidative damage of postburn myocardium.", "Journal of proteomics", "2012 Dec 21", "Zhang DX, Yan H, Hu JY, Zhang JP, Teng M, Tong DL, Xiang F, Zhang Q, Fang YD, Liang GP, Huang YS", "protein_xref_pubmed", "23041468", "protein_xref_refseq", "NP_001099765" ], [ "P05432-1", "A two-tiered mechanism of EGFR inhibition by RALT/MIG6 via kinase suppression and receptor degradation.", "The Journal of cell biology", "2010 May 3", "Frosi Y, Anastasi S, Ballaro C, Varsano G, Castellani L, Maspero E, Polo S, Alema S, Segatto O", "protein_xref_pubmed", "20421427", "protein_xref_refseq", "NP_001014093" ], [ "Q920H8-1", "Age-dependent expression of duodenal cytochrome b, divalent metal transporter 1, ferroportin 1, and hephaestin in the duodenum of rats.", "Journal of gastroenterology and hepatology", "2015 Mar", "Kong WN, Wu Q, Shen D, Zhao SE, Guo P, Duan XL, Chang YZ", "protein_xref_pubmed", "25318588", "protein_xref_refseq", "NP_579838" ], [ "Q5M831-1", "The schizophrenia susceptibility factor dysbindin and its associated complex sort cargoes from cell bodies to the synapse.", "Molecular biology of the cell", "2011 Dec", "Larimore J, Tornieri K, Ryder PV, Gokhale A, Zlatic SA, Craige B, Lee JD, Talbot K, Pare JF, Smith Y, Faundez V", "protein_xref_pubmed", "21998198", "protein_xref_refseq", "NP_001014178" ], [ "Q1AAU6-1", "ASAP1 promotes tumor cell motility and invasiveness, stimulates metastasis formation in vivo, and correlates with poor survival in colorectal cancer patients.", "Oncogene", "2010 Apr 22", "Muller T, Stein U, Poletti A, Garzia L, Rothley M, Plaumann D, Thiele W, Bauer M, Galasso A, Schlag P, Pankratz M, Zollo M, Sleeman JP", "protein_xref_pubmed", "20154719", "protein_xref_refseq", "NP_001037710" ], [ "Q03062-1", "Folic acid enhances Notch signaling, hippocampal neurogenesis, and cognitive function in a rat model of cerebral ischemia.", "Nutritional neuroscience", "2012 Mar", "Zhang X, Huang G, Liu H, Chang H, Wilson JX", "protein_xref_pubmed", "22334042", "protein_xref_refseq", "NP_077359" ], [ "P39947-1", "Cyclin C and cyclin dependent kinases 1, 2 and 3 in thrombin-induced neuronal cell cycle progression and apoptosis.", "Neuroscience letters", "2009 Feb 6", "Rao HV, Thirumangalakudi L, Grammas P", "protein_xref_pubmed", "19103257", "protein_xref_refseq", "NP_001093942" ], [ "Q62840-1", "Ameloblastin and amelogenin share a common secretory pathway and are co-secreted during enamel formation.", "Matrix biology : journal of the International Society for Matrix Biology", "2008 May", "Zalzal SF, Smith CE, Nanci A", "protein_xref_pubmed", "18281204", "protein_xref_refseq", "NP_037032" ], [ "Q07116-1", "Sulphite oxidase gene expression in human brain and in other human and rat tissues.", "Biochemical and biophysical research communications", "2003 Jun 6", "Woo WH, Yang H, Wong KP, Halliwell B", "protein_xref_pubmed", "12763039", "protein_xref_refseq", "NP_112389" ], [ "P26453-1", "Inflammation suppression by dexamethasone via inhibition of CD147-mediated NF-kappaB pathway in collagen-induced arthritis rats.", "Molecular and cellular biochemistry", "2020 Oct", "Wang Q, Xu B, Fan K, Wu J, Wang T", "protein_xref_pubmed", "32594339", "protein_xref_refseq", "NP_001103352" ], [ "A0A8I6A0T0-1", "GRP78, but Not Protein-disulfide Isomerase, Partially Reverses Hyperglycemia-induced Inhibition of Insulin Synthesis and Secretion in Pancreatic beta-Cells.", "The Journal of biological chemistry", "2009 Feb 20", "Zhang L, Lai E, Teodoro T, Volchuk A", "protein_xref_pubmed", "19103594", "protein_xref_refseq", "NP_001099245" ] ] }, "readme": "Name\n - Rat Protein Citations (RefSeq)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-09-06T14:06:38.990766\n\nModified on\n - 2022-09-26T09:04:47.917146\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/compiled/rat_protein_blacklisted_pmids_uniprotkb.csv\n Name: rat_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_function_refseq.csv\n Output Subdomain\n Name: rat_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_citations_refseq.csv\n Name: rat_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"5681\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"13664\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1331\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"3555\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"13611\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"13664\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"5855\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_citations_refseq.csv" }