{ "bcoid": "GLY_000262", "title": "Rat UniProtKB Xref PRO", "description": "The Rat UniprotKB Xref PRO contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tags": [ "Pro cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q0HA29-1...", "protein_xref..." ], [ "P30938-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q0HA29-1", "protein_xref_pro", "PR_Q0HA29", "" ], [ "P30938-1", "protein_xref_pro", "PR_P30938", "" ], [ "P30937-1", "protein_xref_pro", "PR_P30937", "" ], [ "O35152-1", "protein_xref_pro", "PR_O35152", "" ], [ "P30936-1", "protein_xref_pro", "PR_P30936", "" ], [ "O35158-1", "protein_xref_pro", "PR_O35158", "" ], [ "P02761-1", "protein_xref_pro", "PR_P02761", "" ], [ "Q9QYH1-1", "protein_xref_pro", "PR_Q9QYH1", "" ], [ "P02764-1", "protein_xref_pro", "PR_P02764", "" ], [ "P02767-1", "protein_xref_pro", "PR_P02767", "" ], [ "P01237-1", "protein_xref_pro", "PR_P01237", "" ], [ "P01230-1", "protein_xref_pro", "PR_P01230", "" ], [ "P09006-1", "protein_xref_pro", "PR_P09006", "" ], [ "Q9JHY8-1", "protein_xref_pro", "PR_Q9JHY8", "" ], [ "Q9JHY1-1", "protein_xref_pro", "PR_Q9JHY1", "" ], [ "Q9JHY2-1", "protein_xref_pro", "PR_Q9JHY2", "" ], [ "Q9JHY7-1", "protein_xref_pro", "PR_Q9JHY7", "" ], [ "Q9WU49-1", "protein_xref_pro", "PR_Q9WU49", "" ], [ "Q9R1N3-1", "protein_xref_pro", "PR_Q9R1N3", "" ], [ "D3ZSP7-1", "protein_xref_pro", "PR_D3ZSP7", "" ], [ "Q9JIL3-1", "protein_xref_pro", "PR_Q9JIL3", "" ], [ "Q6P5P5-1", "protein_xref_pro", "PR_Q6P5P5", "" ], [ "Q6P5P3-1", "protein_xref_pro", "PR_Q6P5P3", "" ], [ "A0A0G2JVZ7-1", "protein_xref_pro", "PR_A0A0G2JVZ7", "" ], [ "Q9QYH7-1", "protein_xref_pro", "PR_Q9QYH7", "" ], [ "Q67ER9-1", "protein_xref_pro", "PR_Q67ER9", "" ], [ "P97613-1", "protein_xref_pro", "PR_P97613", "" ], [ "P43219-1", "protein_xref_pro", "PR_P43219", "" ], [ "Q9ESR9-1", "protein_xref_pro", "PR_Q9ESR9", "" ], [ "Q1M168-1", "protein_xref_pro", "PR_Q1M168", "" ], [ "Q60I18-1", "protein_xref_pro", "PR_Q60I18", "" ], [ "P37089-1", "protein_xref_pro", "PR_P37089", "" ], [ "Q00972-1", "protein_xref_pro", "PR_Q00972", "" ], [ "Q9ESN0-1", "protein_xref_pro", "PR_Q9ESN0", "" ], [ "Q5BK30-1", "protein_xref_pro", "PR_Q5BK30", "" ], [ "Q5BK32-1", "protein_xref_pro", "PR_Q5BK32", "" ], [ "Q5BK38-1", "protein_xref_pro", "PR_Q5BK38", "" ], [ "Q5BK39-1", "protein_xref_pro", "PR_Q5BK39", "" ], [ "P31016-1", "protein_xref_pro", "PR_P31016", "" ], [ "O88302-1", "protein_xref_pro", "PR_O88302", "" ], [ "Q2ABP3-1", "protein_xref_pro", "PR_Q2ABP3", "" ], [ "Q9R1E9-1", "protein_xref_pro", "PR_Q9R1E9", "" ], [ "B1WBP0-1", "protein_xref_pro", "PR_B1WBP0", "" ], [ "Q8VHU4-1", "protein_xref_pro", "PR_Q8VHU4", "" ], [ "Q63285-1", "protein_xref_pro", "PR_Q63285", "" ], [ "Q62739-1", "protein_xref_pro", "PR_Q62739", "" ], [ "Q62737-1", "protein_xref_pro", "PR_Q62737", "" ], [ "Q62736-1", "protein_xref_pro", "PR_Q62736", "" ], [ "Q62735-1", "protein_xref_pro", "PR_Q62735", "" ], [ "Q62730-1", "protein_xref_pro", "PR_Q62730", "" ], [ "P40329-1", "protein_xref_pro", "PR_P40329", "" ], [ "Q9Z1Z1-1", "protein_xref_pro", "PR_Q9Z1Z1", "" ], [ "Q9Z1Z3-1", "protein_xref_pro", "PR_Q9Z1Z3", "" ], [ "Q9Z1Z6-1", "protein_xref_pro", "PR_Q9Z1Z6", "" ], [ "Q9Z1Z9-1", "protein_xref_pro", "PR_Q9Z1Z9", "" ], [ "Q9R006-1", "protein_xref_pro", "PR_Q9R006", "" ], [ "O35923-1", "protein_xref_pro", "PR_O35923", "" ], [ "D3ZN95-1", "protein_xref_pro", "PR_D3ZN95", "" ], [ "O70132-1", "protein_xref_pro", "PR_O70132", "" ], [ "Q69FH1-1", "protein_xref_pro", "PR_Q69FH1", "" ], [ "D4A7T3-1", "protein_xref_pro", "PR_D4A7T3", "" ], [ "Q63035-1", "protein_xref_pro", "PR_Q63035", "" ], [ "Q5XIR6-1", "protein_xref_pro", "PR_Q5XIR6", "" ], [ "Q5XIR4-1", "protein_xref_pro", "PR_Q5XIR4", "" ], [ "Q5XIR9-1", "protein_xref_pro", "PR_Q5XIR9", "" ], [ "Q5XIR8-1", "protein_xref_pro", "PR_Q5XIR8", "" ], [ "P28818-1", "protein_xref_pro", "PR_P28818", "" ], [ "Q04667-1", "protein_xref_pro", "PR_Q04667", "" ], [ "Q04666-1", "protein_xref_pro", "PR_Q04666", "" ], [ "P00884-1", "protein_xref_pro", "PR_P00884", "" ], [ "Q5EBA3-1", "protein_xref_pro", "PR_Q5EBA3", "" ], [ "Q4FZV3-1", "protein_xref_pro", "PR_Q4FZV3", "" ], [ "Q4FZV2-1", "protein_xref_pro", "PR_Q4FZV2", "" ], [ "P16296-1", "protein_xref_pro", "PR_P16296", "" ], [ "Q4FZV0-1", "protein_xref_pro", "PR_Q4FZV0", "" ], [ "Q4FZV7-1", "protein_xref_pro", "PR_Q4FZV7", "" ], [ "P62282-1", "protein_xref_pro", "PR_P62282", "" ], [ "P14841-1", "protein_xref_pro", "PR_P14841", "" ], [ "P14423-1", "protein_xref_pro", "PR_P14423", "" ], [ "Q6SA80-1", "protein_xref_pro", "PR_Q6SA80", "" ], [ "Q99JD1-1", "protein_xref_pro", "PR_Q99JD1", "" ], [ "B0BND4-1", "protein_xref_pro", "PR_B0BND4", "" ], [ "B0BND0-1", "protein_xref_pro", "PR_B0BND0", "" ], [ "O88498-1", "protein_xref_pro", "PR_O88498", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref PRO\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-09-06T14:06:38.988943\n\nModified on\n - 2022-09-26T09:04:47.951266\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniprotKB Xref PRO contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. \n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_pro.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_pro.csv\n Name: rat_protein_xref_pro.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_pro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"8118\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8122\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_xref_pro.csv" }