{ "bcoid": "GLY_000261", "title": "Rat UniProtKB Xref PANTHER", "description": "The Rat UniProtKB Xref PANTHER contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tags": [ "Panther cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q5RJZ1-1...", "protein_xref..." ], [ "Q5RJZ1-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q5RJZ1-1", "protein_xref_panther", "PTHR11472:SF34", "REGULATOR OF TELOMERE ELONGATION HELICASE 1" ], [ "Q5RJZ1-1", "protein_xref_panther", "PTHR11472", "DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER" ], [ "F1LVT6-1", "protein_xref_panther", "PTHR12606:SF30", "SENTRIN-SPECIFIC PROTEASE 1" ], [ "F1LVT6-1", "protein_xref_panther", "PTHR12606", "SENTRIN/SUMO-SPECIFIC PROTEASE" ], [ "Q0HA29-1", "protein_xref_panther", "PTHR12039:SF18", "NICOTINAMIDE/NICOTINIC ACID MONONUCLEOTIDE ADENYLYLTRANSFERASE 2" ], [ "Q0HA29-1", "protein_xref_panther", "PTHR12039", "NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE" ], [ "Q9WVK3-1", "protein_xref_panther", "PTHR24317", "PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE" ], [ "Q9WVK3-1", "protein_xref_panther", "PTHR24317:SF7", "PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE" ], [ "A0A0G2JVG5-1", "protein_xref_panther", "PTHR14845", "COILED-COIL DOMAIN-CONTAINING 166" ], [ "A0A0G2JVG5-1", "protein_xref_panther", "PTHR14845:SF7", "GENE 6583-RELATED" ], [ "A0A0G2JVG6-1", "protein_xref_panther", "PTHR24376", "ZINC FINGER PROTEIN" ], [ "A0A0G2JVG6-1", "protein_xref_panther", "PTHR24376:SF161", "ZINC FINGER PROTEIN 60" ], [ "P30938-1", "protein_xref_panther", "PTHR24229:SF20", "SOMATOSTATIN RECEPTOR TYPE 5" ], [ "P30938-1", "protein_xref_panther", "PTHR24229", "NEUROPEPTIDES RECEPTOR" ], [ "P32301-1", "protein_xref_panther", "PTHR45620:SF25", "GLUCAGON-LIKE PEPTIDE 1 RECEPTOR" ], [ "P32301-1", "protein_xref_panther", "PTHR45620", "PDF RECEPTOR-LIKE PROTEIN-RELATED" ], [ "A0A8I5ZR95-1", "protein_xref_panther", "PTHR10972", "OXYSTEROL-BINDING PROTEIN-RELATED" ], [ "A0A8I5ZR95-1", "protein_xref_panther", "PTHR10972:SF194", "OXYSTEROL-BINDING PROTEIN 2" ], [ "A0A0G2K069-1", "protein_xref_panther", "PTHR24023:SF1079", "COLLAGEN ALPHA-1(IV) CHAIN" ], [ "A0A0G2K069-1", "protein_xref_panther", "PTHR24023", "COLLAGEN ALPHA" ], [ "A0A8I6B3C5-1", "protein_xref_panther", "PTHR12943", "HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER" ], [ "A0A8I6B3C5-1", "protein_xref_panther", "PTHR12943:SF7", "HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UBIQUITIN-LIKE DOMAIN MEMBER 1 PROTEIN" ], [ "A0A8I5Y4X4-1", "protein_xref_panther", "PTHR12948", "NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN" ], [ "A0A8I5Y4X4-1", "protein_xref_panther", "PTHR12948:SF3", "NEDD8 ULTIMATE BUSTER 1" ], [ "P30937-1", "protein_xref_panther", "PTHR24229:SF35", "SOMATOSTATIN RECEPTOR TYPE 4" ], [ "P30937-1", "protein_xref_panther", "PTHR24229", "NEUROPEPTIDES RECEPTOR" ], [ "O35152-1", "protein_xref_panther", "PTHR12791", "GOLGI SNARE BET1-RELATED" ], [ "O35152-1", "protein_xref_panther", "PTHR12791:SF37", "BET1-LIKE PROTEIN" ], [ "P30936-1", "protein_xref_panther", "PTHR24229", "NEUROPEPTIDES RECEPTOR" ], [ "P30936-1", "protein_xref_panther", "PTHR24229:SF42", "SOMATOSTATIN RECEPTOR TYPE 3" ], [ "O35158-1", "protein_xref_panther", "PTHR44170:SF1", "CELL ADHESION MOLECULE-RELATED/DOWN-REGULATED BY ONCOGENES" ], [ "O35158-1", "protein_xref_panther", "PTHR44170", "PROTEIN SIDEKICK" ], [ "F7FI04-1", "protein_xref_panther", "PTHR46209", "PX DOMAIN-CONTAINING PROTEIN" ], [ "F7FI04-1", "protein_xref_panther", "PTHR46209:SF2", "SORTING NEXIN-10" ], [ "P02761-1", "protein_xref_panther", "PTHR11430", "LIPOCALIN" ], [ "P02761-1", "protein_xref_panther", "PTHR11430:SF76", "MAJOR URINARY PROTEIN 1-RELATED" ], [ "Q9QYH1-1", "protein_xref_panther", "PTHR23122:SF34", "MAGUK P55 SUBFAMILY MEMBER 4" ], [ "Q9QYH1-1", "protein_xref_panther", "PTHR23122", "MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK" ], [ "P02764-1", "protein_xref_panther", "PTHR11967", "ALPHA-1-ACID GLYCOPROTEIN" ], [ "P02764-1", "protein_xref_panther", "PTHR11967:SF2", "ALPHA-1-ACID GLYCOPROTEIN 1" ], [ "P02767-1", "protein_xref_panther", "PTHR10395", "URICASE AND TRANSTHYRETIN-RELATED" ], [ "P02767-1", "protein_xref_panther", "PTHR10395:SF12", "TRANSTHYRETIN" ], [ "D4A4W8-1", "protein_xref_panther", "PTHR11267", "T-BOX PROTEIN-RELATED" ], [ "D4A4W8-1", "protein_xref_panther", "PTHR11267:SF83", "T-BOX TRANSCRIPTION FACTOR T" ], [ "D4A4W9-1", "protein_xref_panther", "PTHR46595", "60S RIBOSOMAL PROTEIN L34" ], [ "D4A4W9-1", "protein_xref_panther", "PTHR46595:SF2", "60S RIBOSOMAL PROTEIN L34" ], [ "D4A4W0-1", "protein_xref_panther", "PTHR48018:SF71", "OLFACTORY RECEPTOR" ], [ "D4A4W0-1", "protein_xref_panther", "PTHR48018", "OLFACTORY RECEPTOR" ], [ "D4A4W2-1", "protein_xref_panther", "PTHR11206", "MULTIDRUG RESISTANCE PROTEIN" ], [ "D4A4W2-1", "protein_xref_panther", "PTHR11206:SF270", "MULTIDRUG AND TOXIN EXTRUSION PROTEIN 2" ], [ "F7EN52-1", "protein_xref_panther", "PTHR24293", "CYTOCHROME P450 FAMILY 46 SUBFAMILY A" ], [ "F7EN52-1", "protein_xref_panther", "PTHR24293:SF1", "CHOLESTEROL 24-HYDROXYLASE" ], [ "D4A4W4-1", "protein_xref_panther", "PTHR43329", "EPOXIDE HYDROLASE" ], [ "D4A4W4-1", "protein_xref_panther", "PTHR43329:SF10", "EPOXIDE HYDROLASE 3" ], [ "D4A4W5-1", "protein_xref_panther", "PTHR24092", "PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE" ], [ "D4A4W5-1", "protein_xref_panther", "PTHR24092:SF79", "PHOSPHOLIPID-TRANSPORTING ATPASE VB" ], [ "D4A4W6-1", "protein_xref_panther", "PTHR48027", "HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED" ], [ "D4A4W6-1", "protein_xref_panther", "PTHR48027:SF20", "SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL" ], [ "D4A4W7-1", "protein_xref_panther", "PTHR22910", "PROTEIN MGARP" ], [ "D4A4W7-1", "protein_xref_panther", "PTHR22910:SF6", "PROTEIN MGARP" ], [ "P07727-1", "protein_xref_panther", "PTHR18945", "NEUROTRANSMITTER GATED ION CHANNEL" ], [ "P07727-1", "protein_xref_panther", "PTHR18945:SF213", "GLYCINE RECEPTOR SUBUNIT ALPHA-1" ], [ "D4A6Q6-1", "protein_xref_panther", "PTHR45685:SF2", "CHROMATIN-REMODELING ATPASE INO80" ], [ "D4A6Q6-1", "protein_xref_panther", "PTHR45685", "HELICASE SRCAP-RELATED" ], [ "P01237-1", "protein_xref_panther", "PTHR11417", "SOMATOTROPIN,PROLACTIN" ], [ "P01237-1", "protein_xref_panther", "PTHR11417:SF5", "PROLACTIN" ], [ "A0A8I6AEL7-1", "protein_xref_panther", "PTHR23318", "ATP SYNTHASE GAMMA-RELATED" ], [ "A0A8I6AEL7-1", "protein_xref_panther", "PTHR23318:SF19", "PROTEIN PPP4R3C" ], [ "P01230-1", "protein_xref_panther", "PTHR11515", "GLYCOPROTEIN HORMONE BETA CHAIN" ], [ "P01230-1", "protein_xref_panther", "PTHR11515:SF11", "LUTROPIN SUBUNIT BETA" ], [ "P09005-1", "protein_xref_panther", "PTHR11461", "SERINE PROTEASE INHIBITOR, SERPIN" ], [ "P09005-1", "protein_xref_panther", "PTHR11461:SF195", "SERINE PROTEASE INHIBITOR A3A-RELATED" ], [ "P09006-1", "protein_xref_panther", "PTHR11461", "SERINE PROTEASE INHIBITOR, SERPIN" ], [ "P09006-1", "protein_xref_panther", "PTHR11461:SF133", "SERINE PROTEASE INHIBITOR A3N" ], [ "A0A8I5ZLJ0-1", "protein_xref_panther", "PTHR16238", "GEM-ASSOCIATED PROTEIN 8" ], [ "A0A8I5ZLJ0-1", "protein_xref_panther", "PTHR16238:SF7", "GEM-ASSOCIATED PROTEIN 8" ], [ "Q6AYS7-1", "protein_xref_panther", "PTHR45892", "AMINOACYLASE-1" ], [ "Q6AYS7-1", "protein_xref_panther", "PTHR45892:SF1", "AMINOACYLASE-1" ], [ "Q9JHY8-1", "protein_xref_panther", "PTHR45674", "DNA LIGASE 1/3 FAMILY MEMBER" ], [ "Q9JHY8-1", "protein_xref_panther", "PTHR45674:SF4", "DNA LIGASE 1" ], [ "Q9JHY1-1", "protein_xref_panther", "PTHR45113", "JUNCTIONAL ADHESION MOLECULE A" ], [ "Q9JHY1-1", "protein_xref_panther", "PTHR45113:SF1", "JUNCTIONAL ADHESION MOLECULE A" ], [ "Q9JHY2-1", "protein_xref_panther", "PTHR11153", "SIDEROFLEXIN" ], [ "Q9JHY2-1", "protein_xref_panther", "PTHR11153:SF20", "SIDEROFLEXIN-3" ] ] }, "readme": "Name\n - Rat UniProtKB Xref PANTHER\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-09-06T14:06:38.988053\n\nModified on\n - 2022-09-26T09:04:47.981209\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref PANTHER contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products. \n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_panther.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_panther.csv\n Name: rat_protein_xref_panther.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_panther.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"21696\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"25476\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"21598\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_xref_panther.csv" }