{ "bcoid": "GLY_000256", "title": "Human Protein Citations (RefSeq)", "description": "The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped ...", "filename": "human_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P0C7P3-1...", "SLFN14 mutat..." ], [ "Q8N7H5-1...", "SUMO Modific..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P0C7P3-1", "SLFN14 mutations underlie thrombocytopenia with excessive bleeding and platelet secretion defects.", "The Journal of clinical investigation", "2015 Sep", "Fletcher SJ, Johnson B, Lowe GC, Bem D, Drake S, Lordkipanidze M, Guiu IS, Dawood B, Rivera J, Simpson MA, Daly ME, Motwani J, Collins PW, Watson SP, Morgan NV", "protein_xref_pubmed", "26280575", "protein_xref_refseq", "NP_001123292" ], [ "Q8N7H5-1", "SUMO Modification of PAF1/PD2 Enables PML Interaction and Promotes Radiation Resistance in Pancreatic Ductal Adenocarcinoma.", "Molecular and cellular biology", "2021 Nov 22", "Rauth S, Karmakar S, Shah A, Seshacharyulu P, Nimmakayala RK, Ganguly K, Bhatia R, Muniyan S, Kumar S, Dutta S, Lin C, Datta K, Batra SK, Ponnusamy MP", "protein_xref_pubmed", "34570619", "protein_xref_refseq", "NP_001243755" ], [ "Q9BVV6-1", "The CP110-interacting proteins Talpid3 and Cep290 play overlapping and distinct roles in cilia assembly.", "The Journal of cell biology", "2014 Jan 20", "Kobayashi T, Kim S, Lin YC, Inoue T, Dynlacht BD", "protein_xref_pubmed", "24421332", "protein_xref_refseq", "NP_001231118" ], [ "A8TX70-1", "RNAseq-Based Prioritization Revealed COL6A5, COL8A1, COL10A1 and MIR146A as Common and Differential Susceptibility Biomarkers for Psoriasis and Psoriatic Arthritis: Confirmation from Genotyping Analysis of 1417 Italian Subjects.", "International journal of molecular sciences", "2020 Apr 15", "Caputo V, Strafella C, Termine A, Campione E, Bianchi L, Novelli G, Giardina E, Cascella R", "protein_xref_pubmed", "32326527", "protein_xref_refseq", "NP_001265227" ], [ "O75953-3", "Critical role of zebrafish dnajb5 in myocardial proliferation and regeneration.", "Journal of genetics and genomics = Yi chuan xue bao", "2020 Aug", "Pang M, Xiong C, Xiao C, Du J, Zheng L, Bai L, Zhu X, Xiong JW", "protein_xref_pubmed", "33191150", "protein_xref_refseq", "NP_001128476" ], [ "Q96RU2-1", "USP28 enables oncogenic transformation of respiratory cells, and its inhibition potentiates molecular therapy targeting mutant EGFR, BRAF and PI3K.", "Molecular oncology", "2022 Sep", "Prieto-Garcia C, Hartmann O, Reissland M, Braun F, Bozkurt S, Pahor N, Fuss C, Schirbel A, Schulein-Volk C, Buchberger A, Calzado Canale MA, Rosenfeldt M, Dikic I, Munch C, Diefenbacher ME", "protein_xref_pubmed", "35364627", "protein_xref_refseq", "NP_001333181" ], [ "O60609-1", "Expression of GFRalpha3 correlates with tumor progression and promotes cell metastasis in urothelial carcinoma.", "Minerva urologica e nefrologica = The Italian journal of urology and nephrology", "2018 Feb", "Yan Y, Li MN, Yang B, Geng J, Zheng JH, Yao XD", "protein_xref_pubmed", "28651425", "protein_xref_refseq", "NP_001487" ], [ "Q92824-1", "Osteopontin as a novel substrate for the proprotein convertase 5/6 (PCSK5) in bone.", "Bone", "2018 Feb", "Hoac B, Susan-Resiga D, Essalmani R, Marcinkiweicz E, Seidah NG, McKee MD", "protein_xref_pubmed", "29126984", "protein_xref_refseq", "NP_001177411" ], [ "O14684-1", "Microsomal prostaglandin E synthase-1 is a critical factor in dopaminergic neurodegeneration in Parkinson's disease.", "Neurobiology of disease", "2019 Apr", "Ikeda-Matsuo Y, Miyata H, Mizoguchi T, Ohama E, Naito Y, Uematsu S, Akira S, Sasaki Y, Tanabe M", "protein_xref_pubmed", "30423474", "protein_xref_refseq", "NP_004869" ], [ "Q96L91-1", "TIP60/P400/H4K12ac Plays a Role as a Heterochromatin Back-up Skeleton in Breast Cancer.", "Cancer genomics & proteomics", "2020 Nov-Dec", "Idrissou M, Boisnier T, Sanchez A, Khoufaf FZH, Penault-Llorca F, Bignon YJ, Bernard-Gallon D", "protein_xref_pubmed", "33099470", "protein_xref_refseq", "NP_056224" ], [ "Q14978-1", "Nucleolar TRF2 attenuated nucleolus stress-induced HCC cell-cycle arrest by altering rRNA synthesis.", "Cell death & disease", "2018 May 1", "Yuan F, Xu C, Li G, Tong T", "protein_xref_pubmed", "29725012", "protein_xref_refseq", "NP_001271317" ], [ "P60468-1", "Sec61beta facilitates the maintenance of endoplasmic reticulum homeostasis by associating microtubules.", "Protein & cell", "2018 Jul", "Zhu Y, Zhang G, Lin S, Shi J, Zhang H, Hu J", "protein_xref_pubmed", "29168059", "protein_xref_refseq", "NP_006799" ], [ "P14735-1", "Exploring the Structural Rearrangements of the Human Insulin-Degrading Enzyme through Molecular Dynamics Simulations.", "International journal of molecular sciences", "2022 Feb 3", "Ghoula M, Janel N, Camproux AC, Moroy G", "protein_xref_pubmed", "35163673", "protein_xref_refseq", "NP_001159418" ], [ "Q8N488-1", "The nuclear localization sequence of the epigenetic factor RYBP binds to human importin alpha3.", "Biochimica et biophysica acta. Proteins and proteomics", "2021 Aug", "Neira JL, Jimenez-Alesanco A, Rizzuti B, Velazquez-Campoy A", "protein_xref_pubmed", "33945888", "protein_xref_refseq", "NP_036366" ], [ "P10809-1", "Ectopic CH60 mediates HAPLN1-induced cell survival signaling in multiple myeloma.", "Life science alliance", "2023-03", "De Bakshi Debayan, Chen Yu-Chia, Wuerzberger-Davis Shelly M, Ma Min, Waters Bayley J, Li Lingjun, Suzuki Aussie, Miyamoto Shigeki", "protein_xref_pubmed", "36625202", "protein_xref_refseq", "NP_002147" ], [ "Q8WXX7-1", "Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene.", "Nucleic acids research", "2023-04-11", "Novotn\u00fd Ale\u0161, Plavec Janez, Kocman Voj\u010d", "protein_xref_pubmed", "36864756", "protein_xref_refseq", "NP_001120703" ], [ "P13473-1", "[Clinical characteristics of Danon disease].", "Zhonghua xin xue guan bing za zhi", "2023-01-24", "Wang W W, Zhu Y Y, Wu W, Zhao D C, Lin X, Fang L G, Zhang S Y", "protein_xref_pubmed", "36655242", "protein_xref_refseq", "NP_001116078" ], [ "P28290-1", "Deregulated expression of KRAP, a novel gene encoding actin-interacting protein, in human colon cancer cells.", "Journal of human genetics", "2004", "Inokuchi J, Komiya M, Baba I, Naito S, Sasazuki T, Shirasawa S", "protein_xref_pubmed", "14673706", "protein_xref_refseq", "NP_001274432" ], [ "P33681-1", "Cryptic association of B7-2 molecules and its implication for clustering.", "Protein science : a publication of the Protein Society", "2021 Sep", "Lankipalli S, H S MS, Selvam D, Samanta D, Nair D, Ramagopal UA", "protein_xref_pubmed", "34191384", "protein_xref_refseq", "NP_005182" ], [ "Q99956-1", "Expression of Dual-Specificity Phosphatase 9 in Placenta and Its Relationship with Gestational Diabetes Mellitus.", "Journal of diabetes research", "2019", "Wei Q, Pu X, Zhang L, Xu Y, Duan M, Wang Y", "protein_xref_pubmed", "31772940", "protein_xref_refseq", "NP_001305432" ], [ "Q9H267-1", "Comparative evolutionary analysis of VPS33 homologues: genetic and functional insights.", "Human molecular genetics", "2005 May 15", "Gissen P, Johnson CA, Gentle D, Hurst LD, Doherty AJ, O'Kane CJ, Kelly DA, Maher ER", "protein_xref_pubmed", "15790593", "protein_xref_refseq", "NP_001276077" ], [ "Q96GN5-1", "Glucocorticoid and androgen activation of monoamine oxidase A is regulated differently by R1 and Sp1.", "The Journal of biological chemistry", "2006 Jul 28", "Ou XM, Chen K, Shih JC", "protein_xref_pubmed", "16728402", "protein_xref_refseq", "NP_001120842" ], [ "Q8WVF2-1", "Ucma, a novel secreted cartilage-specific protein with implications in osteogenesis.", "The Journal of biological chemistry", "2008 Mar 14", "Surmann-Schmitt C, Dietz U, Kireva T, Adam N, Park J, Tagariello A, Onnerfjord P, Heinegard D, Schlotzer-Schrehardt U, Deutzmann R, von der Mark K, Stock M", "protein_xref_pubmed", "18156182", "protein_xref_refseq", "NP_001290047" ], [ "P58062-1", "ECRG2, a novel candidate of tumor suppressor gene in the esophageal carcinoma, interacts directly with metallothionein 2A and links to apoptosis.", "Biochemical and biophysical research communications", "2003 Mar 21", "Cui Y, Wang J, Zhang X, Lang R, Bi M, Guo L, Lu SH", "protein_xref_pubmed", "12646258", "protein_xref_refseq", "NP_115955" ], [ "Q3KP66-1", "C1orf106 is a colitis risk gene that regulates stability of epithelial adherens junctions.", "Science (New York, N.Y.)", "2018 Mar 9", "Mohanan V, Nakata T, Desch AN, Levesque C, Boroughs A, Guzman G, Cao Z, Creasey E, Yao J, Boucher G, Charron G, Bhan AK, Schenone M, Carr SA, Reinecker HC, Daly MJ, Rioux JD, Lassen KG, Xavier RJ", "protein_xref_pubmed", "29420262", "protein_xref_refseq", "NP_060735" ], [ "Q9NR71-1", "Neutral ceramidase: Advances in mechanisms, cell regulation, and roles in cancer.", "Advances in biological regulation", "2019 Jan", "Coant N, Hannun YA", "protein_xref_pubmed", "30389354", "protein_xref_refseq", "NP_001137446" ], [ "Q96AX2-1", "RAB37 Hypermethylation Regulates Metastasis and Resistance to Docetaxel-Based Induction Chemotherapy in Nasopharyngeal Carcinoma.", "Clinical cancer research : an official journal of the American Association for Cancer Research", "2018 Dec 15", "Li Y, Yang X, Du X, Lei Y, He Q, Hong X, Tang X, Wen X, Zhang P, Sun Y, Zhang J, Wang Y, Ma J, Liu N", "protein_xref_pubmed", "30131385", "protein_xref_refseq", "NP_001006639" ], [ "O00507-1", "Genetic variants of Y chromosome are associated with a protective lipid profile in black men.", "Arteriosclerosis, thrombosis, and vascular biology", "2008 Aug", "Russo P, Siani A, Miller MA, Karanam S, Esposito T, Gianfrancesco F, Barba G, Lauria F, Strazzullo P, Cappuccio FP", "protein_xref_pubmed", "18511697", "protein_xref_refseq", "NP_004645" ], [ "Q8N3E9-1", "CircMAP3K4 protects human lens epithelial cells from H2O2-induced dysfunction by targeting miR-193a-3p/PLCD3 axis in age-related cataract.", "Cell cycle (Georgetown, Tex.)", "2022-09-07", "Ma Yu, Liu Yi, Shu Baotong, Yang Jianguo, Lv Liang, Zhou Lixiao, Wang Lichun, Shi Zongli", "protein_xref_pubmed", "36071682", "protein_xref_refseq", "NP_588614" ], [ "Q9NSV4-3", "Diaph3 underlines tumor cell heterogeneity in glioblastoma with implications for treatment modalities resistance.", "Journal of neuro-oncology", "2022 May", "Stoyanov GS, Lyutfi E, Georgieva R, Georgiev R, Dzhenkov D, Petkova L, Ivanov BD, Kaprelyan A, Ghenev P", "protein_xref_pubmed", "35380294", "protein_xref_refseq", "NP_001035982" ], [ "O95864-1", "Association of placental fatty acid desaturase 2 (FADS2) methylation with maternal fatty acid levels in women with preeclampsia.", "Prostaglandins, leukotrienes, and essential fatty acids", "2022 Sep", "Dave K, Kaur L, Sundrani D, Sharma P, Bayyana S, Mehendale S, Randhir K, Chandak GR, Joshi S", "protein_xref_pubmed", "35872376", "protein_xref_refseq", "NP_001268430" ], [ "Q9UGU0-1", "Variants in TCF20 in neurodevelopmental disability: description of 27 new patients and review of literature.", "Genetics in medicine : official journal of the American College of Medical Genetics", "2019 Sep", "Torti E, Keren B, Palmer EE, Zhu Z, Afenjar A, Anderson IJ, Andrews MV, Atkinson C, Au M, Berry SA, Bowling KM, Boyle J, Buratti J, Cathey SS, Charles P, Cogne B, Courtin T, Escobar LF, Finley SL, Graham JM Jr, Grange DK, Heron D, Hewson S, Hiatt SM, Hibbs KA, Jayakar P, Kalsner L, Larcher L, Lesca G, Mark PR, Miller K, Nava C, Nizon M, Pai GS, Pappas J, Parsons G, Payne K, Putoux A, Rabin R, Sabatier I, Shinawi M, Shur N, Skinner SA, Valence S, Warren H, Whalen S, Crunk A, Douglas G, Monaghan KG, Person RE, Willaert R, Solomon BD, Juusola J", "protein_xref_pubmed", "30739909", "protein_xref_refseq", "NP_005641" ], [ "Q6UQ28-1", "Identification of Plet-1 as a specific marker of early thymic epithelial progenitor cells.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Jan 22", "Depreter MG, Blair NF, Gaskell TL, Nowell CS, Davern K, Pagliocca A, Stenhouse FH, Farley AM, Fraser A, Vrana J, Robertson K, Morahan G, Tomlinson SR, Blackburn CC", "protein_xref_pubmed", "18195351", "protein_xref_refseq", "NP_001138496" ], [ "Q9C0G0-1", "Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.", "American journal of human genetics", "2009 Nov", "Talmud PJ, Drenos F, Shah S, Shah T, Palmen J, Verzilli C, Gaunt TR, Pallas J, Lovering R, Li K, Casas JP, Sofat R, Kumari M, Rodriguez S, Johnson T, Newhouse SJ, Dominiczak A, Samani NJ, Caulfield M, Sever P, Stanton A, Shields DC, Padmanabhan S, Melander O, Hastie C, Delles C, Ebrahim S, Marmot MG, Smith GD, Lawlor DA, Munroe PB, Day IN, Kivimaki M, Whittaker J, Humphries SE, Hingorani AD", "protein_xref_pubmed", "19913121", "protein_xref_refseq", "NP_001139661" ], [ "Q9UH99-1", "The SUN2-nesprin-2 LINC complex and KIF20A function in the Golgi dispersal.", "Scientific reports", "2021 Mar 8", "Hieda M, Matsumoto T, Isobe M, Kurono S, Yuka K, Kametaka S, Wang JY, Chi YH, Kameda K, Kimura H, Matsuura N, Matsuura S", "protein_xref_pubmed", "33686165", "protein_xref_refseq", "NP_001186508" ], [ "Q04727-1", "Polymorphisms of TGFB1, TLE4 and MUC22 are associated with childhood asthma in Chinese population.", "Allergologia et immunopathologia", "2017 Sep - Oct", "Chen JB, Zhang J, Hu HZ, Xue M, Jin YJ", "protein_xref_pubmed", "28262390", "protein_xref_refseq", "NP_001269677" ], [ "Q8NG31-1", "Characterization of the MLL partner gene AF15q14 involved in t(11;15)(q23;q14).", "Oncogene", "2003 Mar 6", "Kuefer MU, Chinwalla V, Zeleznik-Le NJ, Behm FG, Naeve CW, Rakestraw KM, Mukatira ST, Raimondi SC, Morris SW", "protein_xref_pubmed", "12618768", "protein_xref_refseq", "NP_653091" ], [ "Q96P63-1", "Deciphering the three-domain architecture in schlafens and the structures and roles of human schlafen12 and serpinB12 in transcriptional regulation.", "Journal of molecular graphics & modelling", "2019 Jul", "Chen J, Kuhn LA", "protein_xref_pubmed", "31026779", "protein_xref_refseq", "NP_001294857" ], [ "Q9H7M9-1", "Targeting STAT3-VISTA axis to suppress tumor aggression and burden in acute myeloid leukemia.", "Journal of hematology & oncology", "2023-02-27", "Mo Jianshan, Deng Lin, Peng Keren, Ouyang Shumin, Ding Wen, Lou Linlin, Lin Ziyou, Zhu Jianzheng, Li Jingwei, Zhang Qiyi, Wang Pengyan, Wen Yuanzhen, Chen Xiaobing, Yue Peibin, Lu Jin-Jian, Zhu Kai, Zheng Yongjiang, Wang Yuanxiang, Zhang Xiaolei", "protein_xref_pubmed", "36849939", "protein_xref_refseq", "NP_071436" ], [ "Q92786-1", "Prox1 is differentially localized during lens development.", "Mechanisms of development", "2002 Mar", "Duncan MK, Cui W, Oh DJ, Tomarev SI", "protein_xref_pubmed", "11850194", "protein_xref_refseq", "NP_001257545" ], [ "Q9UPG8-1", "Amplification of the PLAG-family genes-PLAGL1 and PLAGL2-is\u00a0a key feature of the novel tumor type CNS embryonal tumor with PLAGL amplification.", "Acta neuropathologica", "2023-01", "Keck Michaela-Kristina, Sill Martin, Wittmann Andrea, Joshi Piyush, Stichel Damian, Beck Pengbo, Okonechnikow Konstantin, Sievers Philipp, Wefers Annika K, Roncaroli Federico, Avula Shivaram, McCabe Martin G, Hayden James T, Wesseling Pieter, \u00d8ra Ingrid, Nist\u00e9r Monica, Kranendonk Mari\u00ebtte E G, Tops Bastiaan B J, Zapotocky Michal, Zamecnik Josef, Vasiljevic Alexandre, Fenouil Tanguy, Meyronet David, von Hoff Katja, Sch\u00fcller Ulrich, Loiseau Hugues, Figarella-Branger Dominique, Kramm Christof M, Sturm Dominik, Scheie David, Rauramaa Tuomas, Pesola Jouni, Gojo Johannes, Haberler Christine, Brandner Sebastian, Jacques Tom, Sexton Oates Alexandra, Saffery Richard, Koscielniak Ewa, Baker Suzanne J, Yip Stephen, Snuderl Matija, Ud Din Nasir, Samuel David, Schramm Kathrin, Blattner-Johnson Mirjam, Selt Florian, Ecker Jonas, Milde Till, von Deimling Andreas, Korshunov Andrey, Perry Arie, Pfister Stefan M, Sahm Felix, Solomon David A, Jones David T W", "protein_xref_pubmed", "36437415", "protein_xref_refseq", "NP_002648" ], [ "P25874-1", "Increased uncoupling protein 1 levels are associated with attention deficit and hyperactivity disorder in medication-free children.", "Journal of psychiatric research", "2022-12", "Esad Tezcan Mustafa, U\u00e7ar Halit Necmi, Vatansev H\u00fcsamettin", "protein_xref_pubmed", "36327766", "protein_xref_refseq", "NP_068605" ], [ "O76050-1", "Fe65 negatively regulates Jagged1 signaling by decreasing Jagged1 protein stability through the E3 ligase Neuralized-like 1.", "Biochimica et biophysica acta", "2015 Nov", "Lee HJ, Yoon JH, Ahn JS, Jo EH, Kim MY, Lee YC, Kim JW, Ann EJ, Park HS", "protein_xref_pubmed", "26276215", "protein_xref_refseq", "NP_004201" ], [ "Q8WVC0-1", "LEO1 is a partner for Cockayne syndrome protein B (CSB) in response to transcription-blocking DNA damage.", "Nucleic acids research", "2021 Jun 21", "Tiwari V, Kulikowicz 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Zhou Z, Chen X", "protein_xref_pubmed", "32843621", "protein_xref_refseq", "NP_001254657" ], [ "Q9Y3E5-1", "Bit1-a novel regulator of astrocyte function during retinal development: proliferation, migration, and paracrine effects on vascular endothelial cell.", "Human cell", "2019 Oct", "Liu Y, Ji J, Shao W, Luo M, Ma B", "protein_xref_pubmed", "31368047", "protein_xref_refseq", "NP_001015509" ], [ "Q9HBJ8-1", "TMEM27 expression and clinical characteristics and survival in clear cell renal cell carcinoma.", "Acta oncologica (Stockholm, Sweden)", "2022-11-11", "Grewal Rickinder, Choung Hae Yoon G, Roberts Lisa L, Beane Timothy, Chen Luojing, Gilroy Daniel X, Rappold Phillip M, Le Thu H", "protein_xref_pubmed", "36369873", "protein_xref_refseq", "NP_065716" ], [ "Q5BKU9-1", "Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.", "PloS one", "2010 Sep 21", "Hendrickson SL, Lautenberger JA, Chinn LW, Malasky M, Sezgin E, Kingsley LA, Goedert JJ, Kirk GD, Gomperts ED, Buchbinder SP, Troyer JL, O'Brien SJ", "protein_xref_pubmed", "20877624", "protein_xref_refseq", "NP_001291924" ], [ "A0PJK1-1", "Functional characterisation of human SGLT-5 as a novel kidney-specific sodium-dependent sugar transporter.", "FEBS letters", "2012 Feb 3", "Grempler R, Augustin R, Froehner S, Hildebrandt T, Simon E, Mark M, Eickelmann P", "protein_xref_pubmed", "22212718", "protein_xref_refseq", "NP_001035915" ], [ "Q96RG2-1", "Involvement of Per-Arnt-Sim (PAS) kinase in the stimulation of preproinsulin and pancreatic duodenum homeobox 1 gene expression by glucose.", "Proceedings of the National Academy of Sciences of the United States of America", "2004 Jun 1", "da Silva Xavier G, Rutter J, Rutter GA", "protein_xref_pubmed", "15148392", "protein_xref_refseq", "NP_001239048" ], [ "P02788-1", "Evaluation of faecal lactoferrin as a morbidity biomarker in Schistosoma mansoni infection.", "Tropical medicine & international health : TM & IH", "2022 Dec", "Elhadad H, Mohamed MA, Mohamed MM, Abdo S", "protein_xref_pubmed", "36264644", "protein_xref_refseq", "NP_001308050" ], [ "P23582-1", "A novel variant of NPPC causes abnormal post-translational cleavage: A candidate gene for premature ovarian insufficiency.", "Maturitas", "2022 Mar", "Park JY, Go M, Lyu SW, Yoon TK, Kang KM, Kim JW, Shim SH", "protein_xref_pubmed", "35120671", "protein_xref_refseq", "NP_077720" ], [ "O95136-1", "Increased S1P induces S1PR2 internalization to blunt the sensitivity of colorectal cancer to 5-fluorouracil via promoting intracellular uracil generation.", "Acta pharmacologica Sinica", "2021 Mar", "Zhang YH, Cui SX, Wan SB, Wu SH, Qu XJ", "protein_xref_pubmed", "32647340", "protein_xref_refseq", "NP_004221" ], [ "Q8TDN7-1", "[Molecular evolution of neutral ceramidase: signalling molecule and virulence factor].", "Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme", "2002 Mar", "Ito M, Okino N, Tani M, Mitsutake S, Mori K", "protein_xref_pubmed", "11915342", "protein_xref_refseq", "NP_597999" ], [ "Q9NRF8-1", "Low cytosine triphosphate synthase 2 expression renders resistance to 5-fluorouracil in colorectal cancer.", "Cancer biology & therapy", "2011 Mar 15", "Tan WL, Bhattacharya B, Loh M, Balasubramanian I, Akram M, Dong D, Wong L, Thakkar B, Salto-Tellez M, Soo RA, Fichtner I, Iacopetta B, Soong R", "protein_xref_pubmed", "21378502", "protein_xref_refseq", "NP_001137474" ], [ "Q9BUR4-1", "Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway.", "Carcinogenesis", "2008 Oct", "Hosgood HD 3rd, Menashe I, Shen M, Yeager M, Yuenger J, Rajaraman P, He X, Chatterjee N, Caporaso NE, Zhu Y, Chanock SJ, Zheng T, Lan Q", "protein_xref_pubmed", "18676680", "protein_xref_refseq", "NP_001137462" ], [ "O75807-1", "An upstream open reading frame regulates translation of GADD34 during cellular stresses that induce eIF2alpha phosphorylation.", "The Journal of biological chemistry", "2009 Mar 13", "Lee YY, Cevallos RC, Jan E", "protein_xref_pubmed", "19131336", "protein_xref_refseq", "NP_055145" ], [ "O95155-1", "The MPAC domain is a novel mitotically regulated domain, removed by apoptotic protease cleavage during cell death.", "Biochemical and biophysical research communications", "2006 Sep 8", "Spinette S, Mahoney JA, Rosen A", "protein_xref_pubmed", "16870146", "protein_xref_refseq", "NP_001099032" ], [ "Q49AH0-1", "Cerebral dopamine neurotrophic factor reduces alpha-synuclein aggregation and propagation and alleviates behavioral alterations in vivo.", "Molecular therapy : the journal of the American Society of Gene Therapy", "2021 Sep 1", "Albert K, Raymundo DP, Panhelainen A, Eesmaa A, Shvachiy L, Araujo GR, Chmielarz P, Yan X, Singh A, Cordeiro Y, Palhano FL, Foguel D, Luk KC, Domanskyi A, Voutilainen MH, Huttunen HJ, Outeiro TF, Saarma M, Almeida MS, Airavaara M", "protein_xref_pubmed", "33940158", "protein_xref_refseq", "NP_001025125" ], [ "Q9NQG6-1", "Human MIEF1 recruits Drp1 to mitochondrial outer membranes and promotes mitochondrial fusion rather than fission.", "The EMBO journal", "2011 Jun 24", "Zhao J, Liu T, Jin S, Wang X, Qu M, Uhlen P, Tomilin N, Shupliakov O, Lendahl U, Nister M", "protein_xref_pubmed", "21701560", "protein_xref_refseq", "NP_001291493" ], [ "Q9NNZ3-1", "New genetic associations detected in a host response study to hepatitis B vaccine.", "Genes and immunity", "2010 Apr", "Davila S, Froeling FE, Tan A, Bonnard C, Boland GJ, Snippe H, Hibberd ML, Seielstad M", "protein_xref_pubmed", "20237496", "protein_xref_refseq", "NP_001294909" ], [ "Q13972-1", "RASGRF1-rearranged Cutaneous Melanocytic Neoplasms With Spitzoid Cytomorphology: A Clinicopathologic and Genetic Study of 3 Cases.", "The American journal of surgical pathology", "2022 May 1", "Goto K, Pissaloux D, Fraitag S, Amini M, Vaucher R, Tirode F, de la Fouchardiere A", "protein_xref_pubmed", "34799483", "protein_xref_refseq", "NP_002882" ], [ "P12235-1", "Site-specific acetylation of adenine nucleotide translocase 1 at lysine 23 in human muscle.", "Analytical biochemistry", "2021 Oct 1", "Finlayson J, Barakati N, Langlais PR, Funk J, Zapata Bustos R, Coletta DK, Luo M, Willis WT, Mandarino LJ", "protein_xref_pubmed", "34332952", "protein_xref_refseq", "NP_001142" ], [ "Q5SW96-1", "Effects of familial hypercholesterolemia-associated genes on the phenotype of premature myocardial infarction.", "Lipids in health and disease", "2019 Apr 11", "Lee C, Cui Y, Song J, Li S, Zhang F, Wu M, Li L, Hu D, Chen H", "protein_xref_pubmed", "30971288", "protein_xref_refseq", "NP_056442" ], [ "Q14160-1", "Human scribble (Vartul) is targeted for ubiquitin-mediated degradation by the high-risk papillomavirus E6 proteins and the E6AP ubiquitin-protein ligase.", "Molecular and cellular biology", "2000 Nov", "Nakagawa S, Huibregtse JM", "protein_xref_pubmed", "11027293", "protein_xref_refseq", "NP_874365" ], [ "P20749-1", "PCAT1 induced by transcription factor YY1 promotes cholangiocarcinoma proliferation, migration and invasion by sponging miR-216a-3p to up-regulate oncogene BCL3.", "Biological chemistry", "2021 Jan 27", "Sun D, Zhao Y, Wang W, Guan C, Hu Z, Liu L, Jiang X", "protein_xref_pubmed", "33544468", "protein_xref_refseq", "NP_005169" ], [ "Q9H6U6-1", "Human BCAS3 expression in embryonic stem cells and vascular precursors suggests a role in human embryogenesis and tumor angiogenesis.", "PloS one", "2007 Nov 21", "Siva K, Venu P, Mahadevan A, S K S, Inamdar MS", "protein_xref_pubmed", "18030336", "protein_xref_refseq", "NP_001092902" ], [ "O43462-1", "MBTPS2, a membrane bound protease, underlying several distinct skin and bone disorders.", "Journal of translational medicine", "2021 Mar 20", "Caengprasath N, Theerapanon T, Porntaveetus T, Shotelersuk V", "protein_xref_pubmed", "33743732", "protein_xref_refseq", "NP_056968" ], [ "P18545-1", "Phosphodiesterase 6 subunits are expressed and altered in idiopathic pulmonary fibrosis.", "Respiratory research", "2010 Oct 27", "Nikolova S, Guenther A, Savai R, Weissmann N, Ghofrani HA, Konigshoff M, Eickelberg O, Klepetko W, Voswinckel R, Seeger W, Grimminger F, Schermuly RT, Pullamsetti SS", "protein_xref_pubmed", "20979602", "protein_xref_refseq", "NP_002593" ], [ "P41240-1", "Depletion of Csk preferentially reduces the protein level of LynA in a Cbl-dependent manner in cancer cells.", "Scientific reports", "2020 May 6", "Kuga T, Yamane Y, Hayashi S, Taniguchi M, Yamaguchi N, Yamagishi N", "protein_xref_pubmed", "32376886", "protein_xref_refseq", "NP_001120662" ], [ "Q9BRD0-1", "A polygenic basis for four classical Fredrickson hyperlipoproteinemia phenotypes that are characterized by hypertriglyceridemia.", "Human molecular genetics", "2009 Nov 1", "Hegele RA, Ban MR, Hsueh N, Kennedy BA, Cao H, Zou GY, Anand S, Yusuf S, Huff MW, Wang J", "protein_xref_pubmed", "19656773", "protein_xref_refseq", "NP_001153208" ], [ "Q14541-1", "Hepatocyte nuclear factor 4 gamma (HNF4G) is correlated with poor prognosis and promotes tumor cell growth by inhibiting caspase-dependent intrinsic apoptosis in colorectal cancer.", "European journal of pharmacology", "2022 Feb 5", "Chen L, Shi H, Wang X, Wang T, Wang Y, Wu Z, Zhang W, Chen H, Zhong M, Mao X, Shi X, Li Q", "protein_xref_pubmed", "34965388", "protein_xref_refseq", "NP_001317490" ], [ "Q92520-1", "Transcriptional downregulation of FAM3C/ILEI in the Alzheimer's brain.", "Human molecular genetics", "2021 Dec 17", "Watanabe N, Nakano M, Mitsuishi Y, Hara N, Mano T, Iwata A, Murayama S, Suzuki T, Ikeuchi T, Nishimura M", "protein_xref_pubmed", "34378027", "protein_xref_refseq", "NP_001035109" ], [ "Q9HAC7-1", "Glutaric aciduria type 3 is a naturally occurring biochemical trait in inbred mice of 129 substrains.", "Molecular genetics and metabolism", "2021 Feb", "Leandro J, Bender A, Dodatko T, Argmann C, Yu C, Houten SM", "protein_xref_pubmed", "33483254", "protein_xref_refseq", "NP_001180241" ], [ "Q9NQ30-1", "Endothelial cell-specific molecule 1 drives cervical cancer progression.", "Cell death & disease", "2022 Dec 15", "Lu J, Liu Q, Zhu L, Liu Y, Zhu X, Peng S, Chen M, Li P", "protein_xref_pubmed", "36522312", "protein_xref_refseq", "NP_001129076" ], [ "Q8WXC3-1", "NMR assignment of human ASC2, a self contained protein interaction domain involved in apoptosis and inflammation.", "Journal of biomolecular NMR", "2002 Jun", "Espejo F, Green M, Preece NE, Assa-Munt N", "protein_xref_pubmed", "12153040", "protein_xref_refseq", "NP_690865" ], [ "Q99467-1", "CD150 and CD180 are negative regulators of IL-10 expression and secretion in chronic lymphocytic leukemia B cells.", "Neoplasma", "2021 Jul", "Shcherbina V, Gordiienko I, Shlapatska L, Gluzman D, Sidorenko S", "protein_xref_pubmed", "33904315", "protein_xref_refseq", "NP_005573" ], [ "P17516-1", "Polymorphisms in AKR1C4 and HSD3B2 and differences in serum DHEAS and progesterone are associated with paranoid ideation during mania or hypomania in bipolar disorder.", "European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology", "2012 Sep", "Johansson AG, Nikamo P, Schalling M, Landen M", "protein_xref_pubmed", "22356824", "protein_xref_refseq", "NP_001809" ], [ "P10827-1", "Regulation of the THRA gene, encoding the thyroid hormone nuclear receptor TR\u03b11, in intestinal lesions.", "Molecular oncology", "2022-12", "Giolito Maria Virginia, La Rosa Th\u00e9o, Farhat Diana, Bodoirat Serguei, Guardia Gabriela D A, Domon-Dell Claire, Galante Pedro A F, Freund Jean-Noel, Plateroti Michelina", "protein_xref_pubmed", "36217307", "protein_xref_refseq", "NP_001177847" ] ] }, "readme": "Name\n - Human Protein Citations (RefSeq)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-09-06T14:06:38.983152\n\nModified on\n - 2022-09-26T09:04:47.995186\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen. \n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/compiled/human_protein_blacklisted_pmids_uniprotkb.csv\n Name: human_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_function_refseq.csv\n Output Subdomain\n Name: human_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_citations_refseq.csv\n Name: human_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"16044\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"58416\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"2551\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"6096\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"58206\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"58425\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"18077\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_citations_refseq.csv" }