{ "bcoid": "GLY_000241", "title": "Rat Protein Information (UniProtKB)", "description": "The Rat Protein Information dataset contains rat [taxid:10116] UniProtKB canonical accessions with their ...", "filename": "rat_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tags": [ "Protein Information" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "F1LYV1-1...", "F1LYV1_RAT..." ], [ "A0A8I5Y6K2-1...", "A0A8I5Y6K2_R..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "F1LYV1-1", "F1LYV1_RAT", "17281", "151" ], [ "A0A8I5Y6K2-1", "A0A8I5Y6K2_RAT", "19549", "166" ], [ "A0A8I6AS13-1", "A0A8I6AS13_RAT", "25747", "231" ], [ "A0A8I6ALE5-1", "A0A8I6ALE5_RAT", "19537", "172" ], [ "O54842-1", "NUPR1_RAT", "8955", "80" ], [ "P20766-1", "LAC1_RAT", "11565", "104" ], [ "A0A8I5ZYN4-1", "A0A8I5ZYN4_RAT", "144647", "1274" ], [ "Q6P7D7-1", "Q6P7D7_RAT", "53409", "490" ], [ "P46153-1", "GATA6_RAT", "59168", "587" ], [ "B2RZ82-1", "B2RZ82_RAT", "37694", "342" ], [ "F1MAS1-1", "F1MAS1_RAT", "74366", "700" ], [ "A0A8I6A524-1", "A0A8I6A524_RAT", "51712", "462" ], [ "F1MAF8-1", "F1MAF8_RAT", "231555", "2076" ], [ "Q63185-1", "E2AK1_RAT", "69586", "620" ], [ "Q6TUF0-1", "Q6TUF0_RAT", "31768", "289" ], [ "B3EY84-1", "B3EY84_RAT", "20325", "176" ], [ "D3ZGX2-1", "D3ZGX2_RAT", "21613", "185" ], [ "A0A8I5ZN46-1", "A0A8I5ZN46_RAT", "66458", "582" ], [ "A0A8I6AGW8-1", "A0A8I6AGW8_RAT", "288280", "2627" ], [ "Q6JWR2-1", "S38A7_RAT", "49846", "463" ], [ "A0A0G2JWU0-1", "A0A0G2JWU0_RAT", "63563", "550" ], [ "Q68G30-1", "KLC3_RAT", "55655", "505" ], [ "A0A0G2JTX2-1", "A0A0G2JTX2_RAT", "19434", "178" ], [ "A0A8I5ZNP9-1", "A0A8I5ZNP9_RAT", "20464", "168" ], [ "D3ZYQ3-1", "D3ZYQ3_RAT", "80250", "708" ], [ "F1M6U2-1", "F1M6U2_RAT", "26272", "225" ], [ "Q5PPP4-1", "MAGH1_RAT", "24289", "218" ], [ "A0A8I5Y120-1", "A0A8I5Y120_RAT", "66863", "591" ], [ "G3V829-1", "G3V829_RAT", "61437", "569" ], [ "D3ZTI7-1", "D3ZTI7_RAT", "103078", "927" ], [ "D3ZUI0-1", "D3ZUI0_RAT", "62890", "572" ], [ "A0A8I6A0W6-1", "A0A8I6A0W6_RAT", "140990", "1291" ], [ "Q5RJT3-1", "Q5RJT3_RAT", "38761", "340" ], [ "D4ADJ0-1", "D4ADJ0_RAT", "98295", "852" ], [ "F1M163-1", "F1M163_RAT", "51428", "469" ], [ "A0A8I6AJM4-1", "A0A8I6AJM4_RAT", "15396", "138" ], [ "Q3ZB89-1", "Q3ZB89_RAT", "6338", "51" ], [ "Q4KM45-1", "ADSSP_RAT", "19456", "174" ], [ "Q8K3E9-1", "HOMEZ_RAT", "57677", "513" ], [ "D3ZEI2-1", "D3ZEI2_RAT", "70790", "603" ], [ "D4A8M3-1", "D4A8M3_RAT", "47451", "426" ], [ "P14600-1", "NK1R_RAT", "46366", "407" ], [ "Q5HZX7-1", "LDAH_RAT", "36881", "325" ], [ "P19225-1", "CP270_RAT", "56157", "489" ], [ "D4Q8I2-1", "D4Q8I2_RAT", "53932", "488" ], [ "Q6AXZ5-1", "ZMY10_RAT", "50675", "440" ], [ "A0A8I5ZVW7-1", "A0A8I5ZVW7_RAT", "27242", "238" ], [ "P30277-1", "CCNB1_RAT", "47391", "423" ], [ "D3ZQU0-1", "D3ZQU0_RAT", "34311", "308" ], [ "D4AE63-1", "D4AE63_RAT", "81343", "716" ], [ "A0A8I6GM04-1", "A0A8I6GM04_RAT", "123497", "1078" ], [ "Q9JJ54-1", "HNRPD_RAT", "38218", "353" ], [ "D3ZSH6-1", "D3ZSH6_RAT", "20365", "180" ], [ "Q499T7-1", "CFA20_RAT", "19132", "164" ], [ "M0RBB1-1", "M0RBB1_RAT", "27027", "256" ], [ "D4A3W6-1", "D4A3W6_RAT", "72822", "661" ], [ "A0A8I6A9S3-1", "A0A8I6A9S3_RAT", "9966", "88" ], [ "D3ZMD6-1", "D3ZMD6_RAT", "194090", "1784" ], [ "A0A8I6G4P0-1", "A0A8I6G4P0_RAT", "14697", "133" ], [ "Q64017-1", "GP176_RAT", "56785", "513" ], [ "F1M0U5-1", "F1M0U5_RAT", "265930", "2358" ], [ "F7EZW5-1", "F7EZW5_RAT", "54256", "480" ], [ "M0R3S3-1", "M0R3S3_RAT", "101749", "907" ], [ "D3ZVB5-1", "D3ZVB5_RAT", "98396", "853" ], [ "Q761X5-1", "UNC5C_RAT", "103135", "931" ], [ "A0A0G2K1G6-1", "A0A0G2K1G6_RAT", "20308", "176" ], [ "A0A8I5ZUV3-1", "A0A8I5ZUV3_RAT", "17297", "149" ], [ "A0A8I6A3H6-1", "A0A8I6A3H6_RAT", "14958", "131" ], [ "Q67ET0-1", "TA2R4_RAT", "34811", "304" ], [ "M0R9W7-1", "M0R9W7_RAT", "62910", "562" ], [ "F1LXT3-1", "F1LXT3_RAT", "317857", "2795" ], [ "A0A8I5ZNK4-1", "A0A8I5ZNK4_RAT", "53527", "494" ], [ "D4A3U8-1", "D4A3U8_RAT", "101385", "888" ], [ "Q62645-1", "NMDE4_RAT", "143101", "1323" ], [ "A0A8I5ZJM6-1", "A0A8I5ZJM6_RAT", "12958", "117" ], [ "F1LUE9-1", "F1LUE9_RAT", "22388", "190" ], [ "B0BN13-1", "INSY1_RAT", "31654", "291" ], [ "P16443-1", "DBP_RAT", "34436", "325" ], [ "P05504-1", "ATP6_RAT", "25076", "226" ], [ "Q9ES08-1", "KCNK9_RAT", "44357", "396" ], [ "Q5FVR0-1", "TIMD2_RAT", "38544", "349" ], [ "F7EVZ0-1", "F7EVZ0_RAT", "171504", "1736" ], [ "D3ZCI9-1", "D3ZCI9_RAT", "17050", "148" ], [ "M0RC44-1", "M0RC44_RAT", "37563", "330" ] ] }, "readme": "Name\n - Rat Protein Information (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-09-06T14:06:38.968442\n\nModified on\n - 2022-09-26T09:04:47.969437\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Information dataset contains rat [taxid:10116] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts dataset in a csv format. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_info_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_info_uniprotkb.csv\n Name: rat_protein_info_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"22866\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"22866\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"20304\"\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"2128\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_info_uniprotkb.csv" }