{ "bcoid": "GLY_000231", "title": "Rat Phosphorylation Sites (UniProtKB)", "description": "The Rat Phosphorylation Sites (UniProtKB) dataset contains rat [taxid:10116] UniProtKB canonical accessions ...", "filename": "rat_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tags": [ "Phosphorylation Sites" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P15205-1...", "1912..." ], [ "P98158-1...", "4624..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "P15205-1", "1912", "Ser", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P98158-1", "4624", "Ser", "", "", "protein_xref_uniprotkb", "P98158", "protein_xref_uniprotkb", "P98158", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P98158-1", "4624", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P98158", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P11530-1", "3616", "Ser", "", "", "protein_xref_uniprotkb", "P11530", "protein_xref_uniprotkb", "P11530", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P11530-1", "3616", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P11530", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P30427-1", "4414", "Thr", "", "", "protein_xref_uniprotkb", "P30427", "protein_xref_uniprotkb", "P30427", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "O35314-1", "375", "Ser", "", "", "protein_xref_uniprotkb", "O35314", "protein_xref_uniprotkb", "O35314", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O35314-1", "375", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "O35314", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q02294-1", "2065", "Ser", "", "", "protein_xref_uniprotkb", "Q02294", "protein_xref_uniprotkb", "Q02294", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "B0LPN4-1", "2937", "Ser", "", "", "protein_xref_uniprotkb", "B0LPN4", "protein_xref_uniprotkb", "B0LPN4", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q63358-1", "1319", "Thr", "", "", "protein_xref_uniprotkb", "Q63358", "protein_xref_uniprotkb", "Q63358", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "Q63358-1", "1319", "Thr", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q63358", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "Q1AAU6-1", "1056", "Ser", "", "", "protein_xref_uniprotkb", "Q1AAU6", "protein_xref_uniprotkb", "Q1AAU6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q1AAU6-1", "1056", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q1AAU6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q62956-1", "1056", "Tyr", "", "", "protein_xref_uniprotkb", "Q62956", "protein_xref_uniprotkb", "Q62956", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P06494-1", "1056", "Ser", "", "", "protein_xref_uniprotkb", "P06494", "protein_xref_uniprotkb", "P06494", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P06494-1", "1056", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P06494", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9QWN8-1", "1574", "Ser", "", "", "protein_xref_uniprotkb", "Q9QWN8", "protein_xref_uniprotkb", "Q9QWN8", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9QWN8-1", "1574", "Ser", "", "", "protein_xref_pubmed", "16641100", "protein_xref_uniprotkb", "Q9QWN8", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O35119-1", "972", "Tyr", "", "", "protein_xref_uniprotkb", "O35119", "protein_xref_uniprotkb", "O35119", "Phosphotyrosine", "Phosphotyrosine; by FYN", "" ], [ "O35867-1", "961", "Ser", "", "", "protein_xref_uniprotkb", "O35867", "protein_xref_uniprotkb", "O35867", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O35867-1", "961", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "O35867", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9ESR9-1", "1331", "Ser", "", "", "protein_xref_uniprotkb", "Q9ESR9", "protein_xref_uniprotkb", "Q9ESR9", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9ESR9-1", "1331", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q9ESR9", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "F1M3G7-1", "1450", "Ser", "", "", "protein_xref_uniprotkb", "F1M3G7", "protein_xref_uniprotkb", "F1M3G7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O88658-1", "1613", "Ser", "", "", "protein_xref_uniprotkb", "O88658", "protein_xref_uniprotkb", "O88658", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O88658-1", "1613", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "O88658", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P34926-1", "1307", "Ser", "", "", "protein_xref_uniprotkb", "P34926", "protein_xref_uniprotkb", "P34926", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JIR4-1", "1234", "Ser", "", "", "protein_xref_uniprotkb", "Q9JIR4", "protein_xref_uniprotkb", "Q9JIR4", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9JIR4-1", "1234", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q9JIR4", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q63638-1", "2135", "Ser", "", "", "protein_xref_uniprotkb", "Q63638", "protein_xref_uniprotkb", "Q63638", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q63638-1", "2135", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q63638", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P41516-1", "1244", "Thr", "", "", "protein_xref_uniprotkb", "P41516", "protein_xref_uniprotkb", "P41516", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "O35412-1", "1430", "Ser", "", "", "protein_xref_uniprotkb", "O35412", "protein_xref_uniprotkb", "O35412", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O88658-1", "1573", "Ser", "", "", "protein_xref_uniprotkb", "O88658", "protein_xref_uniprotkb", "O88658", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P0C644-1", "984", "Ser", "", "", "protein_xref_uniprotkb", "P0C644", "protein_xref_uniprotkb", "P0C644", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q63355-1", "845", "Ser", "", "", "protein_xref_uniprotkb", "Q63355", "protein_xref_uniprotkb", "Q63355", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q63355-1", "845", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q63355", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "F1LYQ8-1", "876", "Ser", "", "", "protein_xref_uniprotkb", "F1LYQ8", "protein_xref_uniprotkb", "F1LYQ8", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "F1LYQ8-1", "876", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "F1LYQ8", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q29RW1-1", "1474", "Ser", "", "", "protein_xref_uniprotkb", "Q29RW1", "protein_xref_uniprotkb", "Q29RW1", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q29RW1-1", "1474", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q29RW1", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "F1M0Z1-1", "2459", "Ser", "", "", "protein_xref_uniprotkb", "F1M0Z1", "protein_xref_uniprotkb", "F1M0Z1", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "F1M0Z1-1", "2459", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "F1M0Z1", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O54874-1", "1664", "Ser", "", "", "protein_xref_uniprotkb", "O54874", "protein_xref_uniprotkb", "O54874", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P0C0R5-1", "853", "Ser", "", "", "protein_xref_uniprotkb", "P0C0R5", "protein_xref_uniprotkb", "P0C0R5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q8CHI5-1", "976", "Ser", "", "", "protein_xref_uniprotkb", "Q8CHI5", "protein_xref_uniprotkb", "Q8CHI5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P15205-1", "1908", "Ser", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P15205-1", "1908", "Ser", "", "", "protein_xref_pubmed", "16641100", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P15205-1", "1908", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P49791-1", "1454", "Ser", "", "", "protein_xref_uniprotkb", "P49791", "protein_xref_uniprotkb", "P49791", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P70705-1", "1455", "Ser", "", "", "protein_xref_uniprotkb", "P70705", "protein_xref_uniprotkb", "P70705", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9WVC7-1", "1593", "Ser", "", "", "protein_xref_uniprotkb", "Q9WVC7", "protein_xref_uniprotkb", "Q9WVC7", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9WVC7-1", "1593", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q9WVC7", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P15205-1", "1201", "Ser", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P15205-1", "1201", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P15205", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P02563-1", "1680", "Thr", "", "", "protein_xref_uniprotkb", "P02563", "protein_xref_uniprotkb", "P02563", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "P02563-1", "1680", "Thr", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P02563", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "Q63625-1", "1372", "Ser", "", "", "protein_xref_uniprotkb", "Q63625", "protein_xref_uniprotkb", "Q63625", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P16884-1", "937", "Ser", "", "", "protein_xref_uniprotkb", "P16884", "protein_xref_uniprotkb", "P16884", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P16884-1", "937", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P16884", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9JKS6-1", "3577", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9JKS6-1", "3577", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P51593-1", "1471", "Ser", "", "", "protein_xref_uniprotkb", "P51593", "protein_xref_uniprotkb", "P51593", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "B0LPN4-1", "2801", "Ser", "", "", "protein_xref_uniprotkb", "B0LPN4", "protein_xref_uniprotkb", "B0LPN4", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "B0LPN4-1", "2801", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "B0LPN4", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "F1M3G7-1", "2345", "Ser", "", "", "protein_xref_uniprotkb", "F1M3G7", "protein_xref_uniprotkb", "F1M3G7", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9QUH6-1", "1118", "Ser", "", "", "protein_xref_uniprotkb", "Q9QUH6", "protein_xref_uniprotkb", "Q9QUH6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9QUH6-1", "1118", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q9QUH6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P49793-1", "1063", "Ser", "", "", "protein_xref_uniprotkb", "P49793", "protein_xref_uniprotkb", "P49793", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P34926-1", "1742", "Ser", "", "", "protein_xref_uniprotkb", "P34926", "protein_xref_uniprotkb", "P34926", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P34926-1", "1742", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P34926", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P15205-1", "1321", "Thr", "", "", "protein_xref_uniprotkb", "P15205", "protein_xref_uniprotkb", "P15205", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q925B3-1", "1566", "Ser", "", "", "protein_xref_uniprotkb", "Q925B3", "protein_xref_uniprotkb", "Q925B3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O88658-1", "1487", "Ser", "", "", "protein_xref_uniprotkb", "O88658", "protein_xref_uniprotkb", "O88658", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O88658-1", "1487", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "O88658", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q63638-1", "2444", "Ser", "", "", "protein_xref_uniprotkb", "Q63638", "protein_xref_uniprotkb", "Q63638", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q29RW1-1", "1467", "Thr", "", "", "protein_xref_uniprotkb", "Q29RW1", "protein_xref_uniprotkb", "Q29RW1", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "Q29RW1-1", "1467", "Thr", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q29RW1", "Phosphothreonine", "Phosphothreonine", "ECO_0007744" ], [ "O35923-1", "2063", "Ser", "", "", "protein_xref_uniprotkb", "O35923", "protein_xref_uniprotkb", "O35923", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JKS6-1", "4723", "Ser", "", "", "protein_xref_uniprotkb", "Q9JKS6", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9JKS6-1", "4723", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q9JKS6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P12785-1", "2151", "Ser", "", "", "protein_xref_uniprotkb", "P12785", "protein_xref_uniprotkb", "P12785", "Phosphoserine", "Phosphoserine; alternate", "" ], [ "Q9QWN8-1", "2199", "Ser", "", "", "protein_xref_uniprotkb", "Q9QWN8", "protein_xref_uniprotkb", "Q9QWN8", "Phosphoserine", "Phosphoserine", "ECO_0007744" ] ] }, "readme": "Name\n - Rat Phosphorylation Sites (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-09-06T14:06:38.959200\n\nModified on\n - 2022-09-26T09:04:48.021609\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Phosphorylation Sites (UniProtKB) dataset contains rat [taxid:10116] UniProtKB canonical accessions with information on reported and predicted phosphorylation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - phosphorylation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore containing triples from the nt file and extracts as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: rat_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"3985\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"2051\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"4\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"1\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"4125\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"3999\"\n Name: \"phosphorylated_residue\"\n Description: \"The amino acid that is modified by phosphorylation\"\n Unique Values: \"4\"\n Name: \"phosphorylation_annotation\"\n Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n Unique Values: \"442\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"7\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv" }