{ "bcoid": "GLY_000222", "title": "Rat Protein Recommended Names (UniProtKB)", "description": "The Rat Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for rat [taxid:10116] ...", "filename": "rat_protein_recnames.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tags": [ "Protein Recommended Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q0HA29-1...", "Nicotinamide..." ], [ "Q0HA29-1...", "Nicotinamide..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q0HA29-1", "Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2", "NMN/NaMN adenylyltransferase 2", "2.7.7.1" ], [ "Q0HA29-1", "Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2", "NMN/NaMN adenylyltransferase 2", "2.7.7.18" ], [ "P30938-1", "Somatostatin receptor type 5", "SS-5-R", "" ], [ "P30938-1", "Somatostatin receptor type 5", "SS5-R", "" ], [ "P30938-1", "Somatostatin receptor type 5", "SS5R", "" ], [ "A0A8I5ZR95-1", "Oxysterol-binding protein", "", "" ], [ "P30937-1", "Somatostatin receptor type 4", "SS-4-R", "" ], [ "P30937-1", "Somatostatin receptor type 4", "SS4-R", "" ], [ "P30937-1", "Somatostatin receptor type 4", "SS4R", "" ], [ "O35152-1", "BET1-like protein", "", "" ], [ "P30936-1", "Somatostatin receptor type 3", "SS-3-R", "" ], [ "P30936-1", "Somatostatin receptor type 3", "SS3-R", "" ], [ "P30936-1", "Somatostatin receptor type 3", "SS3R", "" ], [ "O35158-1", "Cell adhesion molecule-related/down-regulated by oncogenes", "", "" ], [ "P02761-1", "Major urinary protein", "MUP", "" ], [ "Q9QYH1-1", "MAGUK p55 subfamily member 4", "", "" ], [ "P02764-1", "Alpha-1-acid glycoprotein", "", "" ], [ "P02767-1", "Transthyretin", "", "" ], [ "D4A4W9-1", "60S ribosomal protein L34", "", "" ], [ "D4A4W0-1", "Olfactory receptor", "", "" ], [ "D4A4W2-1", "Multidrug and toxin extrusion protein", "", "" ], [ "D4A4W5-1", "Phospholipid-transporting ATPase", "", "7.6.2.1" ], [ "P01237-1", "Prolactin", "PRL", "" ], [ "P01230-1", "Lutropin subunit beta", "Lutropin beta chain", "" ], [ "P09005-1", "Serine protease inhibitor 2.1", "SPI-2.1", "" ], [ "P09006-1", "Serine protease inhibitor A3N", "Serpin A3N", "" ], [ "A0A8I5ZLJ0-1", "Gem-associated protein 8", "", "" ], [ "Q9JHY8-1", "DNA ligase 1", "", "6.5.1.1" ], [ "Q9JHY1-1", "Junctional adhesion molecule A", "JAM-A", "" ], [ "Q9JHY2-1", "Sideroflexin-3", "", "" ], [ "Q9JHY7-1", "Baculoviral IAP repeat-containing protein 5", "", "" ], [ "Q9WU49-1", "Calcium-regulated heat stable protein 1", "", "" ], [ "A0A8L2QVZ0-1", "Ferritin", "", "" ], [ "A0A8I6GF85-1", "Glycolipid transfer protein domain-containing protein", "", "" ], [ "A0A8I6GF81-1", "RRM domain-containing protein", "", "" ], [ "Q05474-1", "Ubiquitin-like protein FUBI", "", "" ], [ "A0A8I6AER7-1", "Ig-like domain-containing protein", "", "" ], [ "Q9R1N3-1", "Sodium bicarbonate cotransporter 3", "", "" ], [ "D3ZIY3-1", "YTH domain-containing family protein", "", "" ], [ "D3ZIY7-1", "40S ribosomal protein S2", "", "" ], [ "D3ZSP7-1", "E3 ubiquitin-protein ligase TTC3", "", "2.3.2.27" ], [ "A0A8I6AUS4-1", "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "", "" ], [ "A0A8I5Y0D9-1", "ATP synthase F1 subunit epsilon", "", "" ], [ "D3ZFP4-1", "DNA replication licensing factor MCM3", "", "3.6.4.12" ], [ "A0A8I6ALX9-1", "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "", "1.1.1.8" ], [ "D3ZCS9-1", "5-hydroxyisourate hydrolase", "HIU hydrolase", "3.5.2.17" ], [ "D3ZCS9-1", "5-hydroxyisourate hydrolase", "HIUHase", "3.5.2.17" ], [ "Q9JIL3-1", "Interleukin enhancer-binding factor 3", "", "" ], [ "Q6P5P5-1", "Mesoderm-specific transcript homolog protein", "", "3.-.-.-" ], [ "Q6P5P3-1", "Tetratricopeptide repeat protein 9C", "TPR repeat protein 9C", "" ], [ "F1LP13-1", "protein-tyrosine-phosphatase", "", "3.1.3.48" ], [ "A0A8I5ZTM7-1", "Olfactory receptor", "", "" ], [ "Q9QYH7-1", "Appetite-regulating hormone", "", "" ], [ "Q67ER9-1", "Taste receptor type 2 member 39", "T2R39", "" ], [ "A0A8I6ARG8-1", "Beta-galactosidase", "", "3.2.1.23" ], [ "D3ZT66-1", "Olfactory receptor", "", "" ], [ "D4AE80-1", "5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase", "", "3.6.1.62" ], [ "P97613-1", "Securin", "", "" ], [ "P43219-1", "Gastric inhibitory polypeptide receptor", "GIP-R", "" ], [ "Q9ESR9-1", "ATP-binding cassette sub-family A member 2", "", "7.6.2.-" ], [ "Q1M168-1", "Caytaxin", "", "" ], [ "Q60I18-1", "MHC class I-like protein MILL1", "", "" ], [ "P37089-1", "Amiloride-sensitive sodium channel subunit alpha", "", "" ], [ "Q00972-1", "[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial", "", "2.7.11.4" ], [ "M0R659-1", "Olfactory receptor", "", "" ], [ "Q9ESN0-1", "Protein Niban 1", "", "" ], [ "Q5BK30-1", "Dynein assembly factor with WDR repeat domains 1", "", "" ], [ "Q5BK32-1", "FAS-associated factor 2", "", "" ], [ "Q5BK36-1", "Hyaluronidase", "", "3.2.1.35" ], [ "Q5BK38-1", "Transmembrane protein 156", "", "" ], [ "Q5BK39-1", "Transmembrane protein C16orf54 homolog", "", "" ], [ "A0A0G2K2H4-1", "non-specific serine/threonine protein kinase", "", "2.7.11.1" ], [ "P31016-1", "Disks large homolog 4", "", "" ], [ "A0A8I6GDZ5-1", "tRNA N(3)-methylcytidine methyltransferase", "", "2.1.1.-" ], [ "O88302-1", "Guanine nucleotide-binding protein subunit alpha-15", "G alpha-15", "" ], [ "O88302-1", "Guanine nucleotide-binding protein subunit alpha-15", "G-protein subunit alpha-15", "" ], [ "A0A8I6G9U5-1", "Integrin beta N-terminal domain-containing protein", "", "" ], [ "A0A8I5Y5H2-1", "LRRC8 pannexin-like TM region domain-containing protein", "", "" ], [ "A0A0G2JV10-1", "Olfactory receptor", "", "" ], [ "A0A8I6AFT7-1", "NAD(+) kinase", "", "2.7.1.23" ], [ "Q2ABP3-1", "Post-GPI attachment to proteins factor 2", "", "" ], [ "Q9R1E9-1", "CCN family member 2", "", "" ], [ "B1WBP0-1", "Metallophosphoesterase MPPED2", "", "3.1.-.-" ], [ "Q8VHU4-1", "Elongator complex protein 1", "ELP1", "" ] ] }, "readme": "Name\n - Rat Protein Recommended Names (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-09-06T14:06:38.950487\n\nModified on\n - 2022-09-26T09:04:47.939105\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for rat [taxid:10116] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_recnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_recnames.csv\n Name: rat_protein_recnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_recnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13192\"\n Name: \"recommended_name_full\"\n Description: \"Recommended full name of the protein in the UniProtKB database\"\n Unique Values: \"9757\"\n Name: \"recommended_name_short\"\n Description: \"Recommended short name of the protein in UniProtKB database\"\n Unique Values: \"2938\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"1156\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_recnames.csv" }