{
    "bcoid": "GLY_000118",
    "title": "Mouse UniProtKB Xref PANTHER",
    "description": "The Mouse UniProtKB Xref PANTHER contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...",
    "filename": "mouse_protein_xref_panther.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tags": [
            "Panther cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8BH24-1...",
                "protein_xref..."
            ],
            [
                "Q8BH24-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "Q8BH24-1",
                "protein_xref_panther",
                "PTHR10766",
                "TRANSMEMBRANE 9 SUPERFAMILY PROTEIN"
            ],
            [
                "Q8BH24-1",
                "protein_xref_panther",
                "PTHR10766:SF143",
                "TRANSMEMBRANE 9 SUPERFAMILY MEMBER 4"
            ],
            [
                "Q8BH27-1",
                "protein_xref_panther",
                "PTHR10574",
                "NETRIN/LAMININ-RELATED"
            ],
            [
                "Q8BH27-1",
                "protein_xref_panther",
                "PTHR10574:SF298",
                "MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN 9"
            ],
            [
                "Q8BH26-1",
                "protein_xref_panther",
                "PTHR31925",
                "TRANSMEMBRANE PROTEIN 251"
            ],
            [
                "Q8BH26-1",
                "protein_xref_panther",
                "PTHR31925:SF1",
                "TRANSMEMBRANE PROTEIN 251"
            ],
            [
                "Q922G0-1",
                "protein_xref_panther",
                "PTHR45829",
                "MITOCHONDRIAL CARRIER PROTEIN RIM2"
            ],
            [
                "Q922G0-1",
                "protein_xref_panther",
                "PTHR45829:SF2",
                "SOLUTE CARRIER FAMILY 25 MEMBER 36"
            ],
            [
                "Q9JHR7-1",
                "protein_xref_panther",
                "PTHR43690",
                "NARDILYSIN"
            ],
            [
                "Q9JHR7-1",
                "protein_xref_panther",
                "PTHR43690:SF18",
                "INSULIN-DEGRADING ENZYME-RELATED"
            ],
            [
                "Q80T32-1",
                "protein_xref_panther",
                "PTHR12011",
                "ADHESION G-PROTEIN COUPLED RECEPTOR"
            ],
            [
                "Q80T32-1",
                "protein_xref_panther",
                "PTHR12011:SF216",
                "ADHESION G-PROTEIN COUPLED RECEPTOR D1"
            ],
            [
                "B2RXV4-1",
                "protein_xref_panther",
                "PTHR10924",
                "MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED"
            ],
            [
                "B2RXV4-1",
                "protein_xref_panther",
                "PTHR10924:SF2",
                "FELINE LEUKEMIA VIRUS SUBGROUP C RECEPTOR-RELATED PROTEIN 1"
            ],
            [
                "P62492-1",
                "protein_xref_panther",
                "PTHR47979:SF41",
                "RAS-RELATED PROTEIN RAB-11B"
            ],
            [
                "P62492-1",
                "protein_xref_panther",
                "PTHR47979",
                "DRAB11-RELATED"
            ],
            [
                "E9Q3P4-1",
                "protein_xref_panther",
                "PTHR18874",
                "CMF/LEK/CENP CELL DIVISION-RELATED"
            ],
            [
                "E9Q3P4-1",
                "protein_xref_panther",
                "PTHR18874:SF10",
                "CENTROMERE PROTEIN F"
            ],
            [
                "P63166-1",
                "protein_xref_panther",
                "PTHR10562:SF14",
                "SMALL UBIQUITIN-RELATED MODIFIER 1"
            ],
            [
                "P63166-1",
                "protein_xref_panther",
                "PTHR10562",
                "SMALL UBIQUITIN-RELATED MODIFIER"
            ],
            [
                "D3YX67-1",
                "protein_xref_panther",
                "PTHR15725",
                "ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING"
            ],
            [
                "D3YX67-1",
                "protein_xref_panther",
                "PTHR15725:SF1",
                "RIKEN CDNA 1700017N19 GENE"
            ],
            [
                "B2RX88-1",
                "protein_xref_panther",
                "PTHR21616",
                "CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN"
            ],
            [
                "B2RX88-1",
                "protein_xref_panther",
                "PTHR21616:SF2",
                "CENTROSOME AND SPINDLE POLE-ASSOCIATED PROTEIN 1"
            ],
            [
                "A0A087WRQ3-1",
                "protein_xref_panther",
                "PTHR19343:SF21",
                "IG-LIKE DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "A0A087WRQ3-1",
                "protein_xref_panther",
                "PTHR19343",
                "T CELL RECEPTOR ALPHA VARIABLE 1-2"
            ],
            [
                "A5H0M4-1",
                "protein_xref_panther",
                "PTHR24147:SF64",
                "ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 19-RELATED"
            ],
            [
                "A5H0M4-1",
                "protein_xref_panther",
                "PTHR24147",
                "ANKYRIN REPEAT DOMAIN 36-RELATED"
            ],
            [
                "P03899-1",
                "protein_xref_panther",
                "PTHR11058",
                "NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3"
            ],
            [
                "P03899-1",
                "protein_xref_panther",
                "PTHR11058:SF9",
                "NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3"
            ],
            [
                "Q9CWR0-1",
                "protein_xref_panther",
                "PTHR22826:SF117",
                "PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 4B-RELATED"
            ],
            [
                "Q9CWR0-1",
                "protein_xref_panther",
                "PTHR22826",
                "RHO GUANINE EXCHANGE FACTOR-RELATED"
            ],
            [
                "O35153-1",
                "protein_xref_panther",
                "PTHR12791",
                "GOLGI SNARE BET1-RELATED"
            ],
            [
                "O35153-1",
                "protein_xref_panther",
                "PTHR12791:SF37",
                "BET1-LIKE PROTEIN"
            ],
            [
                "Q91YE9-1",
                "protein_xref_panther",
                "PTHR31367",
                "CYTOSOLIC 5'-NUCLEOTIDASE 1 FAMILY MEMBER"
            ],
            [
                "Q91YE9-1",
                "protein_xref_panther",
                "PTHR31367:SF0",
                "CYTOSOLIC 5'-NUCLEOTIDASE 1B"
            ],
            [
                "Q02853-1",
                "protein_xref_panther",
                "PTHR10201:SF20",
                "STROMELYSIN-3"
            ],
            [
                "Q02853-1",
                "protein_xref_panther",
                "PTHR10201",
                "MATRIX METALLOPROTEINASE"
            ],
            [
                "P03893-1",
                "protein_xref_panther",
                "PTHR46552",
                "NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2"
            ],
            [
                "P03893-1",
                "protein_xref_panther",
                "PTHR46552:SF1",
                "NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2"
            ],
            [
                "Q6DYE8-1",
                "protein_xref_panther",
                "PTHR10151",
                "ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE"
            ],
            [
                "Q6DYE8-1",
                "protein_xref_panther",
                "PTHR10151:SF107",
                "ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 3"
            ],
            [
                "Q9R092-1",
                "protein_xref_panther",
                "PTHR43313",
                "SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C"
            ],
            [
                "Q9R092-1",
                "protein_xref_panther",
                "PTHR43313:SF4",
                "17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 6"
            ],
            [
                "Q9QYH9-1",
                "protein_xref_panther",
                "PTHR11471",
                "TUMOR NECROSIS FACTOR FAMILY MEMBER"
            ],
            [
                "Q9QYH9-1",
                "protein_xref_panther",
                "PTHR11471:SF34",
                "TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 14"
            ],
            [
                "P52479-1",
                "protein_xref_panther",
                "PTHR24006:SF687",
                "UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10"
            ],
            [
                "P52479-1",
                "protein_xref_panther",
                "PTHR24006",
                "UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"
            ],
            [
                "P02762-1",
                "protein_xref_panther",
                "PTHR11430",
                "LIPOCALIN"
            ],
            [
                "P02762-1",
                "protein_xref_panther",
                "PTHR11430:SF76",
                "MAJOR URINARY PROTEIN 1-RELATED"
            ],
            [
                "Q9QYH6-1",
                "protein_xref_panther",
                "PTHR11736",
                "MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN"
            ],
            [
                "Q9QYH6-1",
                "protein_xref_panther",
                "PTHR11736:SF28",
                "MELANOMA-ASSOCIATED ANTIGEN D1"
            ],
            [
                "Q08AU9-1",
                "protein_xref_panther",
                "PTHR35967",
                "UPF0450 PROTEIN C17ORF58"
            ],
            [
                "Q08AU9-1",
                "protein_xref_panther",
                "PTHR35967:SF1",
                "UPF0450 PROTEIN C17ORF58"
            ],
            [
                "Q08AU7-1",
                "protein_xref_panther",
                "PTHR17068",
                "MYELOID-ASSOCIATED DIFFERENTIATION MARKER MYADM FAMILY MEMBER"
            ],
            [
                "Q08AU7-1",
                "protein_xref_panther",
                "PTHR17068:SF5",
                "MYELOID-ASSOCIATED DIFFERENTIATION MARKER-LIKE PROTEIN 2"
            ],
            [
                "Q5EBH1-1",
                "protein_xref_panther",
                "PTHR22738",
                "RASSF"
            ],
            [
                "Q5EBH1-1",
                "protein_xref_panther",
                "PTHR22738:SF9",
                "RAS ASSOCIATION DOMAIN-CONTAINING PROTEIN 5"
            ],
            [
                "Q80YU0-1",
                "protein_xref_panther",
                "PTHR12277:SF37",
                "PROTEIN ABHD16B"
            ],
            [
                "Q80YU0-1",
                "protein_xref_panther",
                "PTHR12277",
                "ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q8BTY1-1",
                "protein_xref_panther",
                "PTHR43807:SF14",
                "KYNURENINE--OXOGLUTARATE TRANSAMINASE 1"
            ],
            [
                "Q8BTY1-1",
                "protein_xref_panther",
                "PTHR43807",
                "FI04487P"
            ],
            [
                "Q61216-1",
                "protein_xref_panther",
                "PTHR10139",
                "DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11"
            ],
            [
                "Q61216-1",
                "protein_xref_panther",
                "PTHR10139:SF1",
                "DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11"
            ],
            [
                "Q5SRT8-1",
                "protein_xref_panther",
                "PTHR10177",
                "CYCLINS"
            ],
            [
                "Q5SRT8-1",
                "protein_xref_panther",
                "PTHR10177:SF63",
                "CYCLIN-J-LIKE PROTEIN"
            ],
            [
                "P70414-1",
                "protein_xref_panther",
                "PTHR11878",
                "SODIUM/CALCIUM EXCHANGER"
            ],
            [
                "P70414-1",
                "protein_xref_panther",
                "PTHR11878:SF6",
                "SODIUM/CALCIUM EXCHANGER 1"
            ],
            [
                "P70412-1",
                "protein_xref_panther",
                "PTHR14002:SF27",
                "CUB AND ZONA PELLUCIDA-LIKE DOMAIN-CONTAINING PROTEIN 1"
            ],
            [
                "P70412-1",
                "protein_xref_panther",
                "PTHR14002",
                "ENDOGLIN/TGF-BETA RECEPTOR TYPE III"
            ],
            [
                "Q3TLD5-1",
                "protein_xref_panther",
                "PTHR15111",
                "RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3"
            ],
            [
                "Q3TLD5-1",
                "protein_xref_panther",
                "PTHR15111:SF0",
                "UNCONVENTIONAL PREFOLDIN RPB5 INTERACTOR 1"
            ],
            [
                "A0A0U1RNG7-1",
                "protein_xref_panther",
                "PTHR14499",
                "POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING"
            ],
            [
                "A0A0U1RNG7-1",
                "protein_xref_panther",
                "PTHR14499:SF3",
                "BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD14"
            ],
            [
                "P10852-1",
                "protein_xref_panther",
                "PTHR46673",
                "4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN"
            ],
            [
                "P10852-1",
                "protein_xref_panther",
                "PTHR46673:SF1",
                "4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN"
            ],
            [
                "B2RRA8-1",
                "protein_xref_panther",
                "PTHR23232:SF129",
                "KRAB DOMAIN-CONTAINING PROTEIN ZNF747-RELATED"
            ],
            [
                "B2RRA8-1",
                "protein_xref_panther",
                "PTHR23232",
                "KRAB DOMAIN C2H2 ZINC FINGER"
            ],
            [
                "Q3UMR0-1",
                "protein_xref_panther",
                "PTHR24170",
                "ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27"
            ],
            [
                "Q3UMR0-1",
                "protein_xref_panther",
                "PTHR24170:SF2",
                "ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27"
            ],
            [
                "P70419-1",
                "protein_xref_panther",
                "PTHR11675:SF33",
                "POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 3"
            ],
            [
                "P70419-1",
                "protein_xref_panther",
                "PTHR11675",
                "N-ACETYLGALACTOSAMINYLTRANSFERASE"
            ],
            [
                "Q9EP78-1",
                "protein_xref_panther",
                "PTHR10704",
                "CARBOHYDRATE SULFOTRANSFERASE"
            ],
            [
                "Q9EP78-1",
                "protein_xref_panther",
                "PTHR10704:SF5",
                "CARBOHYDRATE SULFOTRANSFERASE 7"
            ]
        ]
    },
    "readme": "Name\n   - Mouse UniProtKB Xref PANTHER\n\nVersion\n   - v-2.1.1\n\nCreated on\n  - 2019-03-15T15:06:27.574866\n\nModified on\n   - 2022-09-26T08:56:48.526479\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse UniProtKB Xref PANTHER contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n   - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products. \n\nDescription Domain\n   Keywords\n   - protein family\n   - PANTHER\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-mus-musculus.nt\n   Output Subdomain\n      Name: mouse_protein_xref_panther.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_xref_panther.csv\n      Name: mouse_protein_xref_panther.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_xref_panther.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"21124\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"25820\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"21882\"",
    "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/mouse_protein_xref_panther.csv"
}