{ "bcoid": "GLY_000113", "title": "Human UniProtKB Xref OMA", "description": "The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Oma cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "A2RU30-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_oma", "MVRVHHL", "" ], [ "A2RU30-1", "protein_xref_oma", "KAPCCTH", "" ], [ "Q96J66-1", "protein_xref_oma", "VYHYYIQ", "" ], [ "Q96J65-1", "protein_xref_oma", "CPQDWPS", "" ], [ "Q6UW68-1", "protein_xref_oma", "FQMRAVE", "" ], [ "Q8IYT4-1", "protein_xref_oma", "MKTQGKY", "" ], [ "A6NC51-1", "protein_xref_oma", "WICIIRY", "" ], [ "P40424-1", "protein_xref_oma", "STPNSAX", "" ], [ "P40425-1", "protein_xref_oma", "HALHEPP", "" ], [ "P40429-1", "protein_xref_oma", "GMLPWKT", "" ], [ "P62873-1", "protein_xref_oma", "PLDSQWV", "" ], [ "Q9NQU5-1", "protein_xref_oma", "ARRQTMW", "" ], [ "H0YL14-1", "protein_xref_oma", "HVTMFLV", "" ], [ "Q5VVP1-1", "protein_xref_oma", "SHTPWSA", "" ], [ "Q9H4G0-1", "protein_xref_oma", "QDKGPMA", "" ], [ "Q8N865-1", "protein_xref_oma", "DFPKCVE", "" ], [ "A6NIR3-1", "protein_xref_oma", "SQECINL", "" ], [ "Q86VY4-1", "protein_xref_oma", "APETCST", "" ], [ "Q86VY9-1", "protein_xref_oma", "MDSLMVP", "" ], [ "Q9Y5S9-1", "protein_xref_oma", "IYNHEEF", "" ], [ "P19075-1", "protein_xref_oma", "IAIWIRV", "" ], [ "Q99519-1", "protein_xref_oma", "IRSYDAC", "" ], [ "O15417-1", "protein_xref_oma", "RFHGPET", "" ], [ "O75448-1", "protein_xref_oma", "TWQDICL", "" ], [ "Q96RU3-1", "protein_xref_oma", "XQNEGTI", "" ], [ "Q96RU2-1", "protein_xref_oma", "DQQVLYK", "" ], [ "Q01813-1", "protein_xref_oma", "EWQDQMC", "" ], [ "Q96RU8-1", "protein_xref_oma", "GPPDCLS", "" ], [ "Q9H9Q4-1", "protein_xref_oma", "VTRQEIQ", "" ], [ "Q6ZRV2-1", "protein_xref_oma", "GCHGEDT", "" ], [ "P16520-1", "protein_xref_oma", "AKIYACH", "" ], [ "Q8NCJ5-1", "protein_xref_oma", "EEDDTMM", "" ], [ "Q9Y296-1", "protein_xref_oma", "GQRDGIN", "" ], [ "Q9Y297-1", "protein_xref_oma", "ENNWRMG", "" ], [ "Q9Y294-1", "protein_xref_oma", "NNDYADQ", "" ], [ "Q9Y295-1", "protein_xref_oma", "SAKHPGQ", "" ], [ "Q99613-1", "protein_xref_oma", "VSRTHSI", "" ], [ "P17027-1", "protein_xref_oma", "NAKLIWH", "" ], [ "Q99613-1", "protein_xref_oma", "VSRTHSI", "" ], [ "Q6ICB4-1", "protein_xref_oma", "WELQGPT", "" ], [ "Q6ICB0-1", "protein_xref_oma", "LFDNNCN", "" ], [ "O75635-1", "protein_xref_oma", "QIDKMLH", "" ], [ "P02144-1", "protein_xref_oma", "MRLFQDH", "" ], [ "P17693-1", "protein_xref_oma", "KRETQIF", "" ], [ "O00507-1", "protein_xref_oma", "ITWASAC", "" ], [ "O00505-1", "protein_xref_oma", "GGNEHIQ", "" ], [ "Q05397-1", "protein_xref_oma", "IWQRETI", "" ], [ "Q05397-1", "protein_xref_oma", "IWQRETI", "" ], [ "Q8IYD2-1", "protein_xref_oma", "NGIPMDC", "" ], [ "Q8IYD1-1", "protein_xref_oma", "ESWEHSK", "" ], [ "Q8IYD9-1", "protein_xref_oma", "FTNMPQF", "" ], [ "Q8IYD8-1", "protein_xref_oma", "MQMLPND", "" ], [ "Q9H0H3-1", "protein_xref_oma", "KIYQVDQ", "" ], [ "Q8IVD9-1", "protein_xref_oma", "RYDPDCW", "" ], [ "Q12805-1", "protein_xref_oma", "ERCICRS", "" ], [ "P24903-1", "protein_xref_oma", "ESHRWRP", "" ], [ "Q8IWU6-1", "protein_xref_oma", "GFDYAKX", "" ], [ "O95070-1", "protein_xref_oma", "NWEVRYS", "" ], [ "P02511-1", "protein_xref_oma", "FRDWWED", "" ], [ "Q14181-1", "protein_xref_oma", "PFLDIEH", "" ], [ "Q8WX94-1", "protein_xref_oma", "LTEVCCK", "" ], [ "O75346-1", "protein_xref_oma", "SGHIKEH", "" ], [ "Q9UPY3-1", "protein_xref_oma", "TTYLYCT", "" ], [ "Q9P0Z9-1", "protein_xref_oma", "EMYSDPV", "" ], [ "Q9H6U6-1", "protein_xref_oma", "FSIKAPW", "" ], [ "Q53F39-1", "protein_xref_oma", "LHCMKYP", "" ], [ "Q5M9N0-1", "protein_xref_oma", "ECQCIIQ", "" ], [ "Q96JY6-1", "protein_xref_oma", "HAVRIQE", "" ], [ "O60507-1", "protein_xref_oma", "LNDFRQC", "" ], [ "O95825-1", "protein_xref_oma", "PCSGLCE", "" ], [ "Q8N7C0-1", "protein_xref_oma", "QDYIFLC", "" ], [ "P15907-1", "protein_xref_oma", "HCHLRDH", "" ], [ "Q86YS6-1", "protein_xref_oma", "MFVMETS", "" ], [ "Q9UPQ0-1", "protein_xref_oma", "YKRNQGQ", "" ], [ "Q92552-1", "protein_xref_oma", "AVYHQMP", "" ], [ "O00423-1", "protein_xref_oma", "ICCADFH", "" ], [ "Q9NV23-1", "protein_xref_oma", "EKVISCF", "" ], [ "Q12926-1", "protein_xref_oma", "YPSCHSA", "" ], [ "Q9NV29-1", "protein_xref_oma", "PMTMEKS", "" ], [ "Q9NUQ6-1", "protein_xref_oma", "QAFVDGX", "" ], [ "Q8WW38-1", "protein_xref_oma", "QISSICP", "" ], [ "O43312-1", "protein_xref_oma", "AGAFPHC", "" ], [ "P62714-1", "protein_xref_oma", "GAMEPMN", "" ], [ "P06241-1", "protein_xref_oma", "PGHNTRR", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref OMA\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2022-09-26T08:56:48.486746\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_oma.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_oma.csv\n Name: human_protein_xref_oma.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18944\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"19005\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_xref_oma.csv" }