{ "bcoid": "GLY_000101", "title": "Human UniProtKB Xref GeneCards", "description": "The Human UniProtKB Xref GeneCards contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_genecards.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Genecards cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q96J66-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_genecards", "PKLR", "" ], [ "Q96J66-1", "protein_xref_genecards", "ABCC11", "" ], [ "Q96J65-1", "protein_xref_genecards", "ABCC12", "" ], [ "P40424-1", "protein_xref_genecards", "PBX1", "" ], [ "P40425-1", "protein_xref_genecards", "PBX2", "" ], [ "P40426-1", "protein_xref_genecards", "PBX3", "" ], [ "P40429-1", "protein_xref_genecards", "RPL13A", "" ], [ "Q9H2I8-1", "protein_xref_genecards", "LRMDA", "" ], [ "H0YL14-1", "protein_xref_genecards", "TMEM250", "" ], [ "Q9BXR3-1", "protein_xref_genecards", "ERVK-6", "" ], [ "Q9BXR3-1", "protein_xref_genecards", "ERVK-6", "" ], [ "Q5VVP1-1", "protein_xref_genecards", "SPATA31A6", "" ], [ "Q8N865-1", "protein_xref_genecards", "C7orf31", "" ], [ "A6NIR3-1", "protein_xref_genecards", "AGAP5", "" ], [ "Q86VY4-1", "protein_xref_genecards", "TSPYL5", "" ], [ "Q86VY9-1", "protein_xref_genecards", "TMEM200A", "" ], [ "Q9Y5S9-1", "protein_xref_genecards", "RBM8A", "" ], [ "P19075-1", "protein_xref_genecards", "TSPAN8", "" ], [ "Q99519-1", "protein_xref_genecards", "NEU1", "" ], [ "O15417-1", "protein_xref_genecards", "TNRC18", "" ], [ "Q96RU7-1", "protein_xref_genecards", "TRIB3", "" ], [ "Q96RU3-1", "protein_xref_genecards", "FNBP1", "" ], [ "Q96RU2-1", "protein_xref_genecards", "USP28", "" ], [ "Q96RU8-1", "protein_xref_genecards", "TRIB1", "" ], [ "Q6ZRV3-1", "protein_xref_genecards", "LINC00696", "" ], [ "Q6ZRV2-1", "protein_xref_genecards", "FAM83H", "" ], [ "P16520-1", "protein_xref_genecards", "GNB3", "" ], [ "Q8NCJ5-1", "protein_xref_genecards", "SPRYD3", "" ], [ "Q9Y296-1", "protein_xref_genecards", "TRAPPC4", "" ], [ "Q9Y297-1", "protein_xref_genecards", "BTRC", "" ], [ "Q9Y294-1", "protein_xref_genecards", "ASF1A", "" ], [ "Q9Y295-1", "protein_xref_genecards", "DRG1", "" ], [ "Q6ICB4-1", "protein_xref_genecards", "PHETA2", "" ], [ "Q6ICB0-1", "protein_xref_genecards", "DESI1", "" ], [ "P17693-1", "protein_xref_genecards", "HLA-G", "" ], [ "O00507-1", "protein_xref_genecards", "USP9Y", "" ], [ "O00505-1", "protein_xref_genecards", "KPNA3", "" ], [ "O00501-1", "protein_xref_genecards", "CLDN5", "" ], [ "Q8IYD2-1", "protein_xref_genecards", "KLHDC8A", "" ], [ "Q8IYD1-1", "protein_xref_genecards", "GSPT2", "" ], [ "Q8IYD9-1", "protein_xref_genecards", "C18orf54", "" ], [ "Q8IYD8-1", "protein_xref_genecards", "FANCM", "" ], [ "Q9H0H3-1", "protein_xref_genecards", "KLHL25", "" ], [ "Q8IVD9-1", "protein_xref_genecards", "NUDCD3", "" ], [ "P24903-1", "protein_xref_genecards", "CYP2F1", "" ], [ "Q5M9N0-1", "protein_xref_genecards", "CCDC158", "" ], [ "Q8N7C0-1", "protein_xref_genecards", "LRRC52", "" ], [ "Q9NV23-1", "protein_xref_genecards", "OLAH", "" ], [ "Q9NV29-1", "protein_xref_genecards", "TMEM100", "" ], [ "Q2M238-1", "protein_xref_genecards", "RRN3P1", "" ], [ "Q9UQ26-6", "protein_xref_genecards", "RIMS2", "" ], [ "P0C7I6-2", "protein_xref_genecards", "CCDC159", "" ], [ "P0C7I0-1", "protein_xref_genecards", "USP17L8", "" ], [ "Q5HYW2-1", "protein_xref_genecards", "NHSL2", "" ], [ "Q5HYW3-1", "protein_xref_genecards", "RTL5", "" ], [ "Q9Y5J9-1", "protein_xref_genecards", "TIMM8B", "" ], [ "P45984-1", "protein_xref_genecards", "MAPK9", "" ], [ "Q7Z5G4-1", "protein_xref_genecards", "GOLGA7", "" ], [ "Q9Y5J6-1", "protein_xref_genecards", "TIMM10B", "" ], [ "Q9Y5J7-1", "protein_xref_genecards", "TIMM9", "" ], [ "P27469-1", "protein_xref_genecards", "G0S2", "" ], [ "Q9H239-1", "protein_xref_genecards", "MMP28", "" ], [ "Q9H237-1", "protein_xref_genecards", "PORCN", "" ], [ "Q8NEQ5-1", "protein_xref_genecards", "C1orf162", "" ], [ "Q8NEQ6-1", "protein_xref_genecards", "SRARP", "" ], [ "Q8N9X3-1", "protein_xref_genecards", "LINC01356", "" ], [ "Q8N9X5-1", "protein_xref_genecards", "LINC02912", "" ], [ "Q9H7J1-1", "protein_xref_genecards", "PPP1R3E", "" ], [ "O60830-1", "protein_xref_genecards", "TIMM17B", "" ], [ "O60831-1", "protein_xref_genecards", "PRAF2", "" ], [ "O60832-1", "protein_xref_genecards", "DKC1", "" ], [ "O14579-1", "protein_xref_genecards", "COPE", "" ], [ "B4DZS4-1", "protein_xref_genecards", "ENSG00000284800", "" ], [ "Q7LDG7-1", "protein_xref_genecards", "RASGRP2", "" ], [ "P17900-1", "protein_xref_genecards", "GM2A", "" ], [ "Q9NPI9-1", "protein_xref_genecards", "KCNJ16", "" ], [ "Q9NPI8-1", "protein_xref_genecards", "FANCF", "" ], [ "Q9NPI5-1", "protein_xref_genecards", "NMRK2", "" ], [ "Q9NPI7-1", "protein_xref_genecards", "KRCC1", "" ], [ "Q9NPI6-1", "protein_xref_genecards", "DCP1A", "" ], [ "Q9NPI1-1", "protein_xref_genecards", "BRD7", "" ], [ "Q9NPI0-1", "protein_xref_genecards", "TMEM138", "" ], [ "Q05397-1", "protein_xref_genecards", "PTK2", "" ], [ "Q96LT9-1", "protein_xref_genecards", "RNPC3", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref GeneCards\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-03-15T12:10:45.775261\n\nModified on\n - 2022-09-26T08:56:48.457177\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref GeneCards contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to GeneCards database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - GeneCards is a searchable, integrative database that provides comprehensive, user-friendly information on all annotated and predicted human genes. It automatically integrates gene-centric data from ~150 web sources, including genomic, transcriptomic, proteomic, genetic, clinical and functional information.\n\nDescription Domain\n Keywords\n - gene\n - GeneCards\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to GeneCards database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_genecards.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_genecards.csv\n Name: human_protein_xref_genecards.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_genecards.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20338\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"20527\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_xref_genecards.csv" }