{ "bcoid": "GLY_000098", "title": "Mouse UniProtKB Xref CDD", "description": "The Mouse UniProtKB Xref CDD contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_cdd.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tags": [ "Cdd cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH27-1...", "protein_xref..." ], [ "P62492-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH27-1", "protein_xref_cdd", "cd00055", "EGF_Lam" ], [ "P62492-1", "protein_xref_cdd", "cd01868", "Rab11_like" ], [ "Q9CWR0-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "Q9CWR0-1", "protein_xref_cdd", "cd13241", "PH2_Kalirin_Trio_p63RhoGEF" ], [ "O35153-1", "protein_xref_cdd", "cd15853", "SNARE_Bet1" ], [ "Q9QYH9-1", "protein_xref_cdd", "cd00184", "TNF" ], [ "P52479-1", "protein_xref_cdd", "cd02257", "Peptidase_C19" ], [ "P02762-1", "protein_xref_cdd", "cd19428", "lipocalin_MUP-like" ], [ "Q5EBH1-1", "protein_xref_cdd", "cd17220", "RA_RASSF5" ], [ "Q5EBH1-1", "protein_xref_cdd", "cd20886", "C1_RASSF5" ], [ "Q5EBH1-1", "protein_xref_cdd", "cd21892", "SARAH_RASSF5" ], [ "Q8BTY1-1", "protein_xref_cdd", "cd00609", "AAT_like" ], [ "Q5SRT8-1", "protein_xref_cdd", "cd20529", "CYCLIN_CCNJ-like_rpt2" ], [ "Q5SRT8-1", "protein_xref_cdd", "cd20528", "CYCLIN_CCNJ-like_rpt1" ], [ "P70412-1", "protein_xref_cdd", "cd00041", "CUB" ], [ "B2RRA8-1", "protein_xref_cdd", "cd07765", "KRAB_A-box" ], [ "P70419-1", "protein_xref_cdd", "cd00161", "RICIN" ], [ "P70419-1", "protein_xref_cdd", "cd02510", "pp-GalNAc-T" ], [ "Q9EP79-1", "protein_xref_cdd", "cd13949", "7tm_V1R_pheromone" ], [ "Q3URK3-1", "protein_xref_cdd", "cd18892", "TET" ], [ "Q9EP73-1", "protein_xref_cdd", "cd20947", "IgV_PDl1" ], [ "Q9EP75-1", "protein_xref_cdd", "cd20679", "CYP4F" ], [ "D3YWQ0-1", "protein_xref_cdd", "cd20850", "C1_DGKiota_rpt1" ], [ "D3YWQ0-1", "protein_xref_cdd", "cd20896", "C1_DGKiota_rpt2" ], [ "P97411-1", "protein_xref_cdd", "cd07661", "BAR_ICA69" ], [ "O08911-1", "protein_xref_cdd", "cd07880", "STKc_p38gamma" ], [ "Q80WC9-1", "protein_xref_cdd", "cd17654", "A_NRPS_acs4" ], [ "O08912-1", "protein_xref_cdd", "cd00161", "RICIN" ], [ "O08912-1", "protein_xref_cdd", "cd02510", "pp-GalNAc-T" ], [ "O08917-1", "protein_xref_cdd", "cd03399", "SPFH_flotillin" ], [ "Q80WC3-1", "protein_xref_cdd", "cd04714", "BAH_BAHCC1" ], [ "Q80WC7-1", "protein_xref_cdd", "cd17903", "ArfGap_AGFG2" ], [ "Q91VH6-1", "protein_xref_cdd", "cd07361", "MEMO_like" ], [ "Q9WTP3-1", "protein_xref_cdd", "cd08532", "SAM_PNT-PDEF-like" ], [ "A0A3Q4EGJ1-1", "protein_xref_cdd", "cd05740", "IgI_hCEACAM_2_4_6_like" ], [ "A0A3Q4EGJ1-1", "protein_xref_cdd", "cd05774", "IgV_CEACAM_D1" ], [ "P19070-1", "protein_xref_cdd", "cd00033", "CCP" ], [ "Q8BYW1-1", "protein_xref_cdd", "cd13263", "PH_RhoGap25-like" ], [ "Q8BYW1-1", "protein_xref_cdd", "cd04390", "RhoGAP_ARHGAP22_24_25" ], [ "Q8C0L9-1", "protein_xref_cdd", "cd08607", "GDPD_GDE5" ], [ "Q66GT5-1", "protein_xref_cdd", "cd14524", "PTPMT1" ], [ "P50429-1", "protein_xref_cdd", "cd16029", "4-S" ], [ "Q8BTJ4-1", "protein_xref_cdd", "cd16018", "Enpp" ], [ "P59708-1", "protein_xref_cdd", "cd12241", "RRM_SF3B14" ], [ "P04760-1", "protein_xref_cdd", "cd19029", "LGIC_ECD_nAChR_G" ], [ "P04760-1", "protein_xref_cdd", "cd19064", "LGIC_TM_nAChR" ], [ "P59808-1", "protein_xref_cdd", "cd11967", "SH3_SASH1" ], [ "P59808-1", "protein_xref_cdd", "cd09492", "SAM_SASH1_repeat2" ], [ "P59808-1", "protein_xref_cdd", "cd09559", "SAM_SASH1_repeat1" ], [ "F8VQK3-1", "protein_xref_cdd", "cd07302", "CHD" ], [ "Q91UZ1-1", "protein_xref_cdd", "cd13361", "PH_PLC_beta" ], [ "Q91UZ1-1", "protein_xref_cdd", "cd08591", "PI-PLCc_beta" ], [ "Q91UZ1-1", "protein_xref_cdd", "cd16211", "EFh_PI-PLCbeta4" ], [ "Q91UZ1-1", "protein_xref_cdd", "cd00275", "C2_PLC_like" ], [ "Q3V3Q4-1", "protein_xref_cdd", "cd08305", "Pyrin" ], [ "Q9D517-1", "protein_xref_cdd", "cd07990", "LPLAT_LCLAT1-like" ], [ "Q9D513-1", "protein_xref_cdd", "cd04475", "RPA1_DBD_B" ], [ "Q8K2M0-1", "protein_xref_cdd", "cd00866", "PEBP_euk" ], [ "P21661-1", "protein_xref_cdd", "cd04059", "Peptidases_S8_Protein_convertases_Kexins_Furin-like" ], [ "O55087-1", "protein_xref_cdd", "cd00265", "MADS_MEF2_like" ], [ "F6ZPB0-1", "protein_xref_cdd", "cd09340", "LIM1_Testin_like" ], [ "F6ZPB0-1", "protein_xref_cdd", "cd09341", "LIM2_Testin_like" ], [ "F6ZPB0-1", "protein_xref_cdd", "cd09828", "PET_OEBT" ], [ "P58462-1", "protein_xref_cdd", "cd20065", "FH_FOXP2" ], [ "P58462-1", "protein_xref_cdd", "cd20065", "FH_FOXP2" ], [ "A2RSY6-1", "protein_xref_cdd", "cd02440", "AdoMet_MTases" ], [ "Q8CB67-1", "protein_xref_cdd", "cd00112", "LDLa" ], [ "Q8CB67-1", "protein_xref_cdd", "cd00146", "PKD" ], [ "Q8VC03-1", "protein_xref_cdd", "cd21949", "TD_EMAP3" ], [ "P05524-1", "protein_xref_cdd", "cd00058", "FGF" ], [ "P22727-1", "protein_xref_cdd", "cd19338", "Wnt_Wnt6" ], [ "P59672-1", "protein_xref_cdd", "cd09499", "SAM_AIDA1AB-like_repeat1" ], [ "P59672-1", "protein_xref_cdd", "cd09500", "SAM_AIDA1AB-like_repeat2" ], [ "P59672-1", "protein_xref_cdd", "cd01274", "PTB_Anks" ], [ "Q8BGW3-1", "protein_xref_cdd", "cd18954", "bHLH_TS_bHLHe22_bHLHb5" ], [ "Q8BGW6-1", "protein_xref_cdd", "cd05578", "STKc_Yank1" ], [ "A0A1B0GSZ2-1", "protein_xref_cdd", "cd15222", "7tmA_OR51-like" ], [ "P98154-1", "protein_xref_cdd", "cd03599", "CLECT_DGCR2_like" ], [ "P98154-1", "protein_xref_cdd", "cd00112", "LDLa" ], [ "Q8K0D2-1", "protein_xref_cdd", "cd00190", "Tryp_SPc" ], [ "Q8K0D2-1", "protein_xref_cdd", "cd00108", "KR" ], [ "Q8K0D2-1", "protein_xref_cdd", "cd00054", "EGF_CA" ], [ "Q9ES28-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "Q9ES28-1", "protein_xref_cdd", "cd12061", "SH3_betaPIX" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref CDD\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-03-15T12:09:02.680538\n\nModified on\n - 2022-09-26T08:48:18.859043\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref CDD contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to CDD database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The Conserved Domain Database is a database of well-annotated multiple sequence alignment models and derived database search models, for ancient domains and full-length proteins.\n\nDescription Domain\n Keywords\n - protein domains\n - CDD\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CDD database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_cdd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_xref_cdd.csv\n Name: mouse_protein_xref_cdd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_xref_cdd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"11490\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7684\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"7680\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/mouse_protein_xref_cdd.csv" }