{ "bcoid": "GLY_000097", "title": "Human UniProtKB Xref CDD", "description": "The Human UniProtKB Xref CDD contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_cdd.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Cdd cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q92994-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_cdd", "cd00288", "Pyruvate_Kinase" ], [ "Q92994-1", "protein_xref_cdd", "cd20554", "CYCLIN_TFIIIB90_rpt2" ], [ "P10242-1", "protein_xref_cdd", "cd00167", "SANT" ], [ "O14817-1", "protein_xref_cdd", "cd03165", "NET-5_like_LEL" ], [ "Q8N6H7-1", "protein_xref_cdd", "cd09029", "ArfGap_ArfGap2" ], [ "Q96J66-1", "protein_xref_cdd", "cd03244", "ABCC_MRP_domain2" ], [ "Q96J66-1", "protein_xref_cdd", "cd03250", "ABCC_MRP_domain1" ], [ "Q96J66-1", "protein_xref_cdd", "cd18592", "ABC_6TM_MRP5_8_9_D1" ], [ "Q96J66-1", "protein_xref_cdd", "cd18599", "ABC_6TM_MRP5_8_9_D2" ], [ "Q96J65-1", "protein_xref_cdd", "cd03244", "ABCC_MRP_domain2" ], [ "Q96J65-1", "protein_xref_cdd", "cd03250", "ABCC_MRP_domain1" ], [ "Q96J65-1", "protein_xref_cdd", "cd18592", "ABC_6TM_MRP5_8_9_D1" ], [ "Q96J65-1", "protein_xref_cdd", "cd18599", "ABC_6TM_MRP5_8_9_D2" ], [ "Q8NC06-1", "protein_xref_cdd", "cd00435", "ACBP" ], [ "Q14766-1", "protein_xref_cdd", "cd00054", "EGF_CA" ], [ "P40424-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "P40425-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "P40426-1", "protein_xref_cdd", "cd00086", "homeodomain" ], [ "P40429-1", "protein_xref_cdd", "cd00392", "Ribosomal_L13" ], [ "P62873-1", "protein_xref_cdd", "cd00200", "WD40" ], [ "P53779-1", "protein_xref_cdd", "cd07850", "STKc_JNK" ], [ "O60506-1", "protein_xref_cdd", "cd12489", "RRM2_hnRNPQ" ], [ "O60506-1", "protein_xref_cdd", "cd12495", "RRM3_hnRNPQ" ], [ "O60506-1", "protein_xref_cdd", "cd21066", "NURR_hnRNPQ" ], [ "P07237-1", "protein_xref_cdd", "cd02961", "PDI_a_family" ], [ "P07237-1", "protein_xref_cdd", "cd02981", "PDI_b_family" ], [ "P07237-1", "protein_xref_cdd", "cd02982", "PDI_b'_family" ], [ "P07237-1", "protein_xref_cdd", "cd02995", "PDI_a_PDI_a'_C" ], [ "P06681-1", "protein_xref_cdd", "cd00033", "CCP" ], [ "P06681-1", "protein_xref_cdd", "cd01470", "vWA_complement_factors" ], [ "Q9Y4J8-1", "protein_xref_cdd", "cd02334", "ZZ_dystrophin" ], [ "Q8NCN2-1", "protein_xref_cdd", "cd18220", "BTB_POZ_ZBTB34" ], [ "Q9NQU5-1", "protein_xref_cdd", "cd01093", "CRIB_PAK_like" ], [ "Q9GZS3-1", "protein_xref_cdd", "cd00200", "WD40" ], [ "Q9BXR3-1", "protein_xref_cdd", "cd09909", "HIV-1-like_HR1-HR2" ], [ "Q9H4G0-1", "protein_xref_cdd", "cd14473", "FERM_B-lobe" ], [ "Q9H4G0-1", "protein_xref_cdd", "cd17201", "FERM_F1_EPB41L1" ], [ "Q9H4G0-1", "protein_xref_cdd", "cd13184", "FERM_C_4_1_family" ], [ "A6NIR3-1", "protein_xref_cdd", "cd01250", "PH_AGAP" ], [ "A6NIR3-1", "protein_xref_cdd", "cd08853", "ArfGap_AGAP2" ], [ "Q9Y5S9-1", "protein_xref_cdd", "cd12324", "RRM_RBM8" ], [ "P41250-1", "protein_xref_cdd", "cd00774", "GlyRS-like_core" ], [ "P41250-1", "protein_xref_cdd", "cd00935", "GlyRS_RNA" ], [ "P19075-1", "protein_xref_cdd", "cd03154", "TM4SF3_like_LEL" ], [ "Q99519-1", "protein_xref_cdd", "cd15482", "Sialidase_non-viral" ], [ "O15417-1", "protein_xref_cdd", "cd20469", "Tudor_TNRC18" ], [ "O15417-1", "protein_xref_cdd", "cd04714", "BAH_BAHCC1" ], [ "Q96RU7-1", "protein_xref_cdd", "cd14024", "PK_TRB3" ], [ "Q96RU3-1", "protein_xref_cdd", "cd07676", "F-BAR_FBP17" ], [ "Q96RU3-1", "protein_xref_cdd", "cd11629", "HR1_FBP17" ], [ "Q96RU2-1", "protein_xref_cdd", "cd14355", "UBA_UBP28" ], [ "Q96RU2-1", "protein_xref_cdd", "cd20487", "USP28_C" ], [ "Q96RU2-1", "protein_xref_cdd", "cd02665", "Peptidase_C19I" ], [ "O14964-1", "protein_xref_cdd", "cd15720", "FYVE_Hrs" ], [ "O14964-1", "protein_xref_cdd", "cd21387", "GAT_Hrs" ], [ "Q01813-1", "protein_xref_cdd", "cd00764", "Eukaryotic_PFK" ], [ "Q96RU8-1", "protein_xref_cdd", "cd14023", "PK_TRB1" ], [ "Q7Z7G2-1", "protein_xref_cdd", "cd22809", "Complexin_NTD_CPLX_III_IV" ], [ "Q9H9Q4-1", "protein_xref_cdd", "cd22210", "HD_XRCC4-like_N" ], [ "Q6ZRV2-1", "protein_xref_cdd", "cd09188", "PLDc_FAM83H_N" ], [ "Q9NQ36-1", "protein_xref_cdd", "cd00041", "CUB" ], [ "P16520-1", "protein_xref_cdd", "cd00200", "WD40" ], [ "Q8NCJ5-1", "protein_xref_cdd", "cd12908", "SPRYD3" ], [ "Q9Y296-1", "protein_xref_cdd", "cd14856", "TRAPPC4_synbindin" ], [ "Q9Y297-1", "protein_xref_cdd", "cd00200", "WD40" ], [ "Q9Y297-1", "protein_xref_cdd", "cd22182", "F-box_FBXW1A" ], [ "Q9Y295-1", "protein_xref_cdd", "cd01896", "DRG" ], [ "Q9Y295-1", "protein_xref_cdd", "cd17230", "TGS_DRG1" ], [ "P35637-1", "protein_xref_cdd", "cd12535", "RRM_FUS_TAF15" ], [ "Q9UPN3-1", "protein_xref_cdd", "cd00051", "EFh" ], [ "Q9UPN3-1", "protein_xref_cdd", "cd00176", "SPEC" ], [ "Q9UPN3-1", "protein_xref_cdd", "cd21188", "CH_PLEC-like_rpt1" ], [ "Q9UPN3-1", "protein_xref_cdd", "cd21240", "CH_MACF1_rpt2" ], [ "Q8WY36-1", "protein_xref_cdd", "cd21989", "HMG-box_HBP2" ], [ "Q9HAU0-1", "protein_xref_cdd", "cd13248", "PH_PEPP1_2_3" ], [ "Q9HAU0-1", "protein_xref_cdd", "cd13248", "PH_PEPP1_2_3" ], [ "P52701-1", "protein_xref_cdd", "cd05837", "PWWP_MSH6" ], [ "P17693-1", "protein_xref_cdd", "cd21022", "IgC1_MHC_Ia_HLA-G" ], [ "O00507-1", "protein_xref_cdd", "cd02659", "peptidase_C19C" ], [ "Q9Y4J8-1", "protein_xref_cdd", "cd16249", "EFh_DTNA" ], [ "O15033-1", "protein_xref_cdd", "cd00078", "HECTc" ], [ "P56202-1", "protein_xref_cdd", "cd02248", "Peptidase_C1A" ], [ "Q6P087-1", "protein_xref_cdd", "cd02869", "PseudoU_synth_RluA_like" ], [ "Q8IYD1-1", "protein_xref_cdd", "cd01883", "EF1_alpha" ] ] }, "readme": "Name\n - Human UniProtKB Xref CDD\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-03-15T12:09:02.680538\n\nModified on\n - 2022-09-26T08:48:18.841071\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref CDD contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to CDD database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The Conserved Domain Database is a database of well-annotated multiple sequence alignment models and derived database search models, for ancient domains and full-length proteins.\n\nDescription Domain\n Keywords\n - protein domains\n - CDD\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CDD database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_cdd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_cdd.csv\n Name: human_protein_xref_cdd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_cdd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"10931\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8441\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"8435\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_xref_cdd.csv" }