{ "bcoid": "GLY_000092", "title": "Human UniProtKB Xref BioMuta", "description": "The Human UniprotKB Xref BioMuta contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_biomuta.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Biomuta" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q96J66-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_biomuta", "P30613", "" ], [ "Q96J66-1", "protein_xref_biomuta", "Q96J66", "" ], [ "Q96J65-1", "protein_xref_biomuta", "Q96J65", "" ], [ "P40426-1", "protein_xref_biomuta", "P40426", "" ], [ "Q5VVP1-1", "protein_xref_biomuta", "Q5VVP1", "" ], [ "Q8N865-1", "protein_xref_biomuta", "Q8N865", "" ], [ "A6NIR3-1", "protein_xref_biomuta", "A6NIR3", "" ], [ "P19075-1", "protein_xref_biomuta", "P19075", "" ], [ "O15417-1", "protein_xref_biomuta", "O15417", "" ], [ "Q96RU3-1", "protein_xref_biomuta", "Q96RU3", "" ], [ "Q96RU2-1", "protein_xref_biomuta", "Q96RU2", "" ], [ "Q96RU8-1", "protein_xref_biomuta", "Q96RU8", "" ], [ "Q6ZRV2-1", "protein_xref_biomuta", "Q6ZRV2", "" ], [ "Q9Y297-1", "protein_xref_biomuta", "Q9Y297", "" ], [ "P17693-1", "protein_xref_biomuta", "P17693", "" ], [ "O00501-1", "protein_xref_biomuta", "O00501", "" ], [ "Q8IYD8-1", "protein_xref_biomuta", "Q8IYD8", "" ], [ "Q9H0H3-1", "protein_xref_biomuta", "Q9H0H3", "" ], [ "Q5M9N0-1", "protein_xref_biomuta", "Q5M9N0", "" ], [ "P0C7I6-2", "protein_xref_biomuta", "P0C7I6", "" ], [ "Q5HYW3-1", "protein_xref_biomuta", "Q5HYW3", "" ], [ "Q9Y5J9-1", "protein_xref_biomuta", "Q9Y5J9", "" ], [ "P27469-1", "protein_xref_biomuta", "P27469", "" ], [ "Q9H237-1", "protein_xref_biomuta", "Q9H237", "" ], [ "Q8NEQ5-1", "protein_xref_biomuta", "Q8NEQ5", "" ], [ "Q7LDG7-1", "protein_xref_biomuta", "Q7LDG7", "" ], [ "Q05397-1", "protein_xref_biomuta", "Q05397", "" ], [ "Q96LT4-1", "protein_xref_biomuta", "Q96LT4", "" ], [ "Q15532-1", "protein_xref_biomuta", "Q15532", "" ], [ "Q96AQ9-1", "protein_xref_biomuta", "Q96AQ9", "" ], [ "Q96AQ1-1", "protein_xref_biomuta", "Q96AQ1", "" ], [ "Q6P1M0-1", "protein_xref_biomuta", "Q6P1M0", "" ], [ "P57087-1", "protein_xref_biomuta", "P57087", "" ], [ "Q8WU76-1", "protein_xref_biomuta", "Q8WU76", "" ], [ "Q8WU79-1", "protein_xref_biomuta", "Q8WU79", "" ], [ "Q8TED9-1", "protein_xref_biomuta", "Q8TED9", "" ], [ "A5PLN7-1", "protein_xref_biomuta", "A5PLN7", "" ], [ "O43592-1", "protein_xref_biomuta", "O43592", "" ], [ "Q6IEY1-1", "protein_xref_biomuta", "Q6IEY1", "" ], [ "Q99518-1", "protein_xref_biomuta", "Q99518", "" ], [ "Q9P1Z2-1", "protein_xref_biomuta", "Q9P1Z2", "" ], [ "P19404-1", "protein_xref_biomuta", "P19404", "" ], [ "Q6ZWK6-1", "protein_xref_biomuta", "Q6ZWK6", "" ], [ "Q9Y646-1", "protein_xref_biomuta", "Q9Y646", "" ], [ "Q5T6X4-1", "protein_xref_biomuta", "Q5T6X4", "" ], [ "Q64ET8-1", "protein_xref_biomuta", "Q64ET8", "" ], [ "P55786-1", "protein_xref_biomuta", "P55786", "" ], [ "P31689-1", "protein_xref_biomuta", "P31689", "" ], [ "P35414-1", "protein_xref_biomuta", "P35414", "" ], [ "Q9BYW2-1", "protein_xref_biomuta", "Q9BYW2", "" ], [ "Q49AA0-1", "protein_xref_biomuta", "Q49AA0", "" ], [ "Q9NXJ0-1", "protein_xref_biomuta", "Q9NXJ0", "" ], [ "O00506-1", "protein_xref_biomuta", "O00506", "" ], [ "O60462-1", "protein_xref_biomuta", "O60462", "" ], [ "Q02218-1", "protein_xref_biomuta", "Q02218", "" ], [ "Q9BR84-1", "protein_xref_biomuta", "Q9BR84", "" ], [ "Q92915-1", "protein_xref_biomuta", "Q92915", "" ], [ "Q92917-1", "protein_xref_biomuta", "Q92917", "" ], [ "Q92911-1", "protein_xref_biomuta", "Q92911", "" ], [ "Q92913-1", "protein_xref_biomuta", "Q92913", "" ], [ "P15924-1", "protein_xref_biomuta", "P15924", "" ], [ "O43149-1", "protein_xref_biomuta", "O43149", "" ], [ "O43148-1", "protein_xref_biomuta", "O43148", "" ], [ "O43143-1", "protein_xref_biomuta", "O43143", "" ], [ "Q15935-1", "protein_xref_biomuta", "Q15935", "" ], [ "O43147-1", "protein_xref_biomuta", "O43147", "" ], [ "Q9BSL1-1", "protein_xref_biomuta", "Q9BSL1", "" ], [ "Q8IWV7-1", "protein_xref_biomuta", "Q8IWV7", "" ], [ "Q8IWV2-1", "protein_xref_biomuta", "Q8IWV2", "" ], [ "Q9Y267-1", "protein_xref_biomuta", "Q9Y267", "" ], [ "Q6S8J3-1", "protein_xref_biomuta", "Q6S8J3", "" ], [ "Q9UDX4-1", "protein_xref_biomuta", "Q9UDX4", "" ], [ "Q8NDM7-1", "protein_xref_biomuta", "Q8NDM7", "" ], [ "P30084-1", "protein_xref_biomuta", "P30084", "" ], [ "P08962-1", "protein_xref_biomuta", "P08962", "" ], [ "P15498-1", "protein_xref_biomuta", "P15498", "" ], [ "Q96FC9-1", "protein_xref_biomuta", "Q96FC9", "" ], [ "Q96PV4-1", "protein_xref_biomuta", "Q96PV4", "" ], [ "Q06787-1", "protein_xref_biomuta", "Q06787", "" ], [ "Q6UVK1-1", "protein_xref_biomuta", "Q6UVK1", "" ], [ "O43264-1", "protein_xref_biomuta", "O43264", "" ], [ "Q6P0Q8-1", "protein_xref_biomuta", "Q6P0Q8", "" ], [ "A6NMZ7-1", "protein_xref_biomuta", "A6NMZ7", "" ], [ "Q6ZR52-1", "protein_xref_biomuta", "Q6ZR52", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref BioMuta\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-03-15T11:44:11.813164\n\nModified on\n - 2022-09-26T08:48:18.867570\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniprotKB Xref BioMuta contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to BioMuta database accessions/identifiers. BioMuta is a single-nucleotide variation (SNV) and disease association database where variations are mapped to genomes and RefSeq nucleotide entries, and unified through UniProtKB/Swiss-Prot positional coordinates. The current version of BioMuta contains only nonsynonymous single-nucleotide variations (nsSNVs) associated with cancer. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - mutation\n - BioMuta\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to BioMuta database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_mutation_cancer.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_mutation_cancer.csv\n Output Subdomain\n Name: human_protein_xref_biomuta.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_biomuta.csv\n Name: human_protein_xref_biomuta.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_biomuta.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"6558\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6558\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_xref_biomuta.csv" }