{ "bcoid": "GLY_000091", "title": "Mouse UniProtKB Xref Bgee", "description": "The Mouse UniProtKB Xref Bgee contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_bgee.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tags": [ "Bgee" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_bgee", "ENSMUSG00000068040", "Expressed in humerus cartilage element and 252 other tissues" ], [ "Q8BH27-1", "protein_xref_bgee", "ENSMUSG00000039270", "Expressed in otolith organ and 227 other tissues" ], [ "Q8BH26-1", "protein_xref_bgee", "ENSMUSG00000046675", "Expressed in peripheral nervous system and 74 other tissues" ], [ "E9Q287-1", "protein_xref_bgee", "ENSMUSG00000043635", "Expressed in cortical plate and 52 other tissues" ], [ "Q922G0-1", "protein_xref_bgee", "ENSMUSG00000032449", "Expressed in metanephric cortical collecting duct and 254 other tissues" ], [ "O35453-1", "protein_xref_bgee", "ENSMUSG00000001249", "Expressed in right kidney and 182 other tissues" ], [ "Q80T32-1", "protein_xref_bgee", "ENSMUSG00000044017", "Expressed in lumbar dorsal root ganglion and 102 other tissues" ], [ "B2RXV4-1", "protein_xref_bgee", "ENSMUSG00000066595", "Expressed in epithelium of small intestine and 215 other tissues" ], [ "P62492-1", "protein_xref_bgee", "ENSMUSG00000004771", "Expressed in lip and 261 other tissues" ], [ "E9Q3P4-1", "protein_xref_bgee", "ENSMUSG00000026605", "Expressed in animal zygote and 183 other tissues" ], [ "P63166-1", "protein_xref_bgee", "ENSMUSG00000026021", "Expressed in morula and 70 other tissues" ], [ "D3YX67-1", "protein_xref_bgee", "ENSMUSG00000056912", "Expressed in spermatid and 17 other tissues" ], [ "B2RX88-1", "protein_xref_bgee", "ENSMUSG00000056763", "Expressed in metanephric cortical collecting duct and 238 other tissues" ], [ "A0A087WRQ3-1", "protein_xref_bgee", "ENSMUSG00000076758", "Expressed in thymus and 9 other tissues" ], [ "A5H0M4-1", "protein_xref_bgee", "ENSMUSG00000063932", "Expressed in spermatocyte and 4 other tissues" ], [ "P03899-1", "protein_xref_bgee", "ENSMUSG00000064360", "Expressed in hypothalamus and 60 other tissues" ], [ "Q9CWR0-1", "protein_xref_bgee", "ENSMUSG00000019467", "Expressed in dentate gyrus of hippocampal formation granule cell and 253 other tissues" ], [ "O35153-1", "protein_xref_bgee", "ENSMUSG00000025484", "Expressed in dentate gyrus of hippocampal formation granule cell and 253 other tissues" ], [ "A2RSJ4-1", "protein_xref_bgee", "ENSMUSG00000019951", "Expressed in submandibular gland and 240 other tissues" ], [ "Q91YE9-1", "protein_xref_bgee", "ENSMUSG00000020622", "Expressed in seminiferous tubule of testis and 12 other tissues" ], [ "Q02853-1", "protein_xref_bgee", "ENSMUSG00000000901", "Expressed in floor plate spinal cord region and 186 other tissues" ], [ "P03893-1", "protein_xref_bgee", "ENSMUSG00000064345", "Expressed in dentate gyrus of hippocampal formation granule cell and 60 other tissues" ], [ "Q6DYE8-1", "protein_xref_bgee", "ENSMUSG00000019989", "Expressed in epithelium of small intestine and 175 other tissues" ], [ "P36536-1", "protein_xref_bgee", "ENSMUSG00000020088", "Expressed in thoracic mammary gland and 266 other tissues" ], [ "Q9R092-1", "protein_xref_bgee", "ENSMUSG00000025396", "Expressed in left lobe of liver and 30 other tissues" ], [ "Q9QYH9-1", "protein_xref_bgee", "ENSMUSG00000005824", "Expressed in granulocyte and 31 other tissues" ], [ "P52479-1", "protein_xref_bgee", "ENSMUSG00000031826", "Expressed in embryonic post-anal tail and 264 other tissues" ], [ "A0A0U1RNG7-1", "protein_xref_bgee", "ENSMUSG00000051727", "Expressed in indifferent gonad and 162 other tissues" ], [ "P02762-1", "protein_xref_bgee", "ENSMUSG00000078673", "Expressed in quadriceps femoris and 25 other tissues" ], [ "Q9QYH6-1", "protein_xref_bgee", "ENSMUSG00000025151", "Expressed in placenta labyrinth and 280 other tissues" ], [ "Q08AU9-1", "protein_xref_bgee", "ENSMUSG00000078607", "Expressed in right lung lobe and 108 other tissues" ], [ "Q08AU7-1", "protein_xref_bgee", "ENSMUSG00000025141", "Expressed in hindlimb stylopod muscle and 59 other tissues" ], [ "Q5EBH1-1", "protein_xref_bgee", "ENSMUSG00000026430", "Expressed in peripheral lymph node and 234 other tissues" ], [ "O35309-1", "protein_xref_bgee", "ENSMUSG00000026946", "Expressed in small intestine Peyer's patch and 202 other tissues" ], [ "Q80YU0-1", "protein_xref_bgee", "ENSMUSG00000055882", "Expressed in testis and 10 other tissues" ], [ "Q8BTY1-1", "protein_xref_bgee", "ENSMUSG00000039648", "Expressed in esophagus and 251 other tissues" ], [ "Q61216-1", "protein_xref_bgee", "ENSMUSG00000031928", "Expressed in ectoderm and 231 other tissues" ], [ "Q5SRT8-1", "protein_xref_bgee", "ENSMUSG00000044707", "Expressed in embryonic post-anal tail and 137 other tissues" ], [ "Q9JHX3-1", "protein_xref_bgee", "ENSMUSG00000030745", "Expressed in thymus and 45 other tissues" ], [ "P70412-1", "protein_xref_bgee", "ENSMUSG00000040205", "Expressed in pyloric antrum and 46 other tissues" ], [ "Q3TLD5-1", "protein_xref_bgee", "ENSMUSG00000030421", "Expressed in optic fissure and 254 other tissues" ], [ "A0A0U1RNG7-1", "protein_xref_bgee", "ENSMUSG00000051727", "Expressed in indifferent gonad and 162 other tissues" ], [ "Q9QYC7-1", "protein_xref_bgee", "ENSMUSG00000053460", "Expressed in humerus cartilage element and 107 other tissues" ], [ "P10852-1", "protein_xref_bgee", "ENSMUSG00000010095", "Expressed in placenta labyrinth and 283 other tissues" ], [ "Q8K2F8-1", "protein_xref_bgee", "ENSMUSG00000066568", "Expressed in otolith organ and 229 other tissues" ], [ "B2RRA8-1", "protein_xref_bgee", "ENSMUSG00000068962", "Expressed in embryonic post-anal tail and 54 other tissues" ], [ "Q3UMR0-1", "protein_xref_bgee", "ENSMUSG00000034867", "Expressed in retinal neural layer and 222 other tissues" ], [ "P70419-1", "protein_xref_bgee", "ENSMUSG00000026994", "Expressed in parotid gland and 152 other tissues" ], [ "Q9EP78-1", "protein_xref_bgee", "ENSMUSG00000037347", "Expressed in right kidney and 126 other tissues" ], [ "Q9EP79-1", "protein_xref_bgee", "ENSMUSG00000060816", "Expressed in lung" ], [ "Q3URK3-1", "protein_xref_bgee", "ENSMUSG00000047146", "Expressed in trophoblast giant cell and 221 other tissues" ], [ "Q9EP72-1", "protein_xref_bgee", "ENSMUSG00000055943", "Expressed in facial nucleus and 241 other tissues" ], [ "Q9EP73-1", "protein_xref_bgee", "ENSMUSG00000016496", "Expressed in mesenteric lymph node and 101 other tissues" ], [ "Q9EP71-1", "protein_xref_bgee", "ENSMUSG00000022246", "Expressed in renal corpuscle and 248 other tissues" ], [ "Q9EP75-1", "protein_xref_bgee", "ENSMUSG00000024292", "Expressed in small intestine Peyer's patch and 47 other tissues" ], [ "Q8VF62-1", "protein_xref_bgee", "ENSMUSG00000066749", "Expressed in secondary oocyte and 5 other tissues" ], [ "Q8CHS4-1", "protein_xref_bgee", "ENSMUSG00000064247", "Expressed in lumbar subsegment of spinal cord and 130 other tissues" ], [ "D3YWQ0-1", "protein_xref_bgee", "ENSMUSG00000038665", "Expressed in lumbar dorsal root ganglion and 55 other tissues" ], [ "P30282-1", "protein_xref_bgee", "ENSMUSG00000034165", "Expressed in granulocyte and 267 other tissues" ], [ "P97411-1", "protein_xref_bgee", "ENSMUSG00000062995", "Expressed in spermatid and 233 other tissues" ], [ "Q3UHI0-1", "protein_xref_bgee", "ENSMUSG00000058690", "Expressed in rostral migratory stream and 246 other tissues" ], [ "S4R213-1", "protein_xref_bgee", "ENSMUSG00000070683", "Expressed in retinal neural layer and 1 other tissue" ], [ "Q91VV4-1", "protein_xref_bgee", "ENSMUSG00000027901", "Expressed in granulocyte and 127 other tissues" ], [ "P53702-1", "protein_xref_bgee", "ENSMUSG00000031352", "Expressed in heart right ventricle and 251 other tissues" ], [ "Q9Z2V6-1", "protein_xref_bgee", "ENSMUSG00000008855", "Expressed in retinal neural layer and 254 other tissues" ], [ "O08911-1", "protein_xref_bgee", "ENSMUSG00000022610", "Expressed in hindlimb stylopod muscle and 207 other tissues" ], [ "Q9CWR2-1", "protein_xref_bgee", "ENSMUSG00000055067", "Expressed in secondary oocyte and 163 other tissues" ], [ "Q80WC9-1", "protein_xref_bgee", "ENSMUSG00000055923", "Expressed in indifferent gonad and 221 other tissues" ], [ "O08912-1", "protein_xref_bgee", "ENSMUSG00000000420", "Expressed in endothelial cell of lymphatic vessel and 295 other tissues" ], [ "O08915-1", "protein_xref_bgee", "ENSMUSG00000024847", "Expressed in retinal neural layer and 77 other tissues" ], [ "O08914-1", "protein_xref_bgee", "ENSMUSG00000034171", "Expressed in dentate gyrus of hippocampal formation granule cell and 208 other tissues" ], [ "O08917-1", "protein_xref_bgee", "ENSMUSG00000059714", "Expressed in granulocyte and 280 other tissues" ], [ "O08918-1", "protein_xref_bgee", "ENSMUSG00000029385", "Expressed in medial ganglionic eminence and 258 other tissues" ], [ "Q80WC1-1", "protein_xref_bgee", "ENSMUSG00000038538", "Expressed in rostral migratory stream and 224 other tissues" ], [ "Q80WC7-1", "protein_xref_bgee", "ENSMUSG00000029722", "Expressed in thymus and 245 other tissues" ], [ "Q9JHY4-1", "protein_xref_bgee", "ENSMUSG00000018211", "Expressed in right kidney and 61 other tissues" ], [ "Q9D0M3-1", "protein_xref_bgee", "ENSMUSG00000022551", "Expressed in ileal epithelium and 266 other tissues" ], [ "Q9CQA0-1", "protein_xref_bgee", "ENSMUSG00000068101", "Expressed in morula and 116 other tissues" ], [ "Q91VH6-1", "protein_xref_bgee", "ENSMUSG00000058704", "Expressed in spermatocyte and 273 other tissues" ], [ "Q9WTP3-1", "protein_xref_bgee", "ENSMUSG00000024215", "Expressed in crypt of Lieberkuhn of small intestine and 78 other tissues" ], [ "Q9Z1B7-1", "protein_xref_bgee", "ENSMUSG00000004864", "Expressed in granulocyte and 180 other tissues" ], [ "B8JJZ7-1", "protein_xref_bgee", "ENSMUSG00000003929", "Expressed in undifferentiated genital tubercle and 207 other tissues" ], [ "A0A3Q4EGJ1-1", "protein_xref_bgee", "ENSMUSG00000078793", "Expressed in placenta" ], [ "D3YVV3-1", "protein_xref_bgee", "ENSMUSG00000057766", "Expressed in substantia nigra and 179 other tissues" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref Bgee\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2022-09-26T08:48:18.828977\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref Bgee contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets\n\nDescription Domain\n Keywords\n - gene expression\n - Bgee\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_xref_bgee.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_xref_bgee.csv\n Name: mouse_protein_xref_bgee.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/mouse_protein_xref_bgee.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20628\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"20705\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"12465\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/mouse_protein_xref_bgee.csv" }