{ "bcoid": "GLY_000035", "title": "Human Protein Citations (UniProtKB)", "description": "The Human Protein Citations dataset contains publication information for human [taxid:9606] UniProtKB ...", "filename": "human_protein_citations_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30613-1...", "Hematologica..." ], [ "P30613-1...", "Hematologica..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P30613-1", "Hematologically important mutations: red cell pyruvate kinase (2nd update).", "Blood Cells Mol. Dis.", "1998", "Bianchi P., Zanella A., Baronciani L.", "protein_xref_pubmed", "10087985", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Hematologically important mutations: red cell pyruvate kinase (third update).", "Blood Cells Mol. Dis.", "2000", "Bianchi P., Zanella A.", "protein_xref_pubmed", "10772876", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Molecular characterization of the PK-LR gene in sixteen pyruvate kinase-deficient patients.", "Br. J. Haematol.", "2001", "Zanella A, Bianchi P, Fermo E, Iurlo A, Zappa M, Vercellati C, Boschetti C, Baronciani L, Cotton F", "protein_xref_pubmed", "11328279", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Structure and function of human erythrocyte pyruvate kinase. Molecular basis of nonspherocytic hemolytic anemia.", "J. Biol. Chem.", "2002", "Valentini G, Chiarelli LR, Fortin R, Dolzan M, Galizzi A, Abraham DJ, Wang C, Bianchi P, Zanella A, Mattevi A", "protein_xref_pubmed", "11960989", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Structural analysis of human pyruvate kinase L-gene and identification of the promoter activity in erythroid cells.", "Biochem. Biophys. Res. Commun.", "1992", "Fujii H., Kanno H., Miwa S.", "protein_xref_pubmed", "1445295", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Identical point mutations of the R-type pyruvate kinase (PK) cDNA found in unrelated PK variants associated with hereditary hemolytic anemia.", "Blood", "1992", "Kanno H, Fujii H, Hirono A, Omine M, Miwa S", "protein_xref_pubmed", "1536957", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "cDNA cloning of human R-type pyruvate kinase and identification of a single amino acid substitution (Thr384-->Met) affecting enzymatic stability in a pyruvate kinase variant (PK Tokyo) associated with hereditary hemolytic anemia.", "Proc. Natl. Acad. Sci. U.S.A.", "1991", "Kanno H, Fujii H, Hirono A, Miwa S", "protein_xref_pubmed", "1896471", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Fifteen novel mutations in PKLR associated with pyruvate kinase (PK) deficiency: structural implications of amino acid substitutions in PK.", "Hum. Mutat.", "2009", "van Wijk R, Huizinga EG, van Wesel AC, van Oirschot BA, Hadders MA, van Solinge WW", "protein_xref_pubmed", "19085939", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Point mutations in the L-type pyruvate kinase gene of two children with hemolytic anemia caused by pyruvate kinase deficiency.", "Blood", "1991", "Neubauer B, Lakomek M, Winkler H, Parke M, Hofferbert S, Schroter W", "protein_xref_pubmed", "2018831", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications.", "Discov. Med.", "2011", "Lyon GJ, Jiang T, Van Wijk R, Wang W, Bodily PM, Xing J, Tian L, Robison RJ, Clement M, Lin Y, Zhang P, Liu Y, Moore B, Glessner JT, Elia J, Reimherr F, van Solinge WW, Yandell M, Hakonarson H, Wang J, Johnson WE, Wei Z, Wang K", "protein_xref_pubmed", "21794208", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Human liver type pyruvate kinase: complete amino acid sequence and the expression in mammalian cells.", "Proc. Natl. Acad. Sci. U.S.A.", "1988", "Tani K, Fujii H, Nagata S, Miwa S", "protein_xref_pubmed", "3126495", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Human liver type pyruvate kinase: cDNA cloning and chromosomal assignment.", "Biochem. Biophys. Res. Commun.", "1987", "Tanaka T., Yoshida M.C., Tani K., Fujii H., Miwa S., Noguchi T., Toyoshima K., Tsutsumi H., Sukegawa J.", "protein_xref_pubmed", "3566732", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Molecular study of pyruvate kinase deficient patients with hereditary nonspherocytic hemolytic anemia.", "J. Clin. Invest.", "1995", "Baronciani L, Beutler E", "protein_xref_pubmed", "7706479", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Molecular abnormality of erythrocyte pyruvate kinase deficiency in the Amish.", "Blood", "1994", "Kanno H, Ballas SK, Miwa S, Fujii H, Bowman HS", "protein_xref_pubmed", "8161798", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Mutations in the pyruvate kinase L gene in patients with hereditary hemolytic anemia.", "Blood", "1994", "Lenzner C, Nurnberg P, Thiele BJ, Reis A, Brabec V, Sakalova A, Jacobasch G", "protein_xref_pubmed", "8180378", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Molecular basis of impaired pyruvate kinase isozyme conversion in erythroid cells: a single amino acid substitution near the active site and decreased mRNA content of the R-type PK.", "Biochem. Biophys. Res. Commun.", "1993", "Kanno H, Fujii H, Tsujino G, Miwa S", "protein_xref_pubmed", "8476433", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Low substrate affinity of pyruvate kinase variant (PK Sapporo) caused by a single amino acid substitution (426 Arg-->Gln) associated with hereditary hemolytic anemia.", "Blood", "1993", "Kanno H, Fujii H, Miwa S", "protein_xref_pubmed", "8481523", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Analysis of pyruvate kinase-deficiency mutations that produce nonspherocytic hemolytic anemia.", "Proc. Natl. Acad. Sci. U.S.A.", "1993", "Baronciani L, Beutler E", "protein_xref_pubmed", "8483951", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Mutations in pyruvate kinase.", "Hum. Mutat.", "1996", "Beutler E., Baronciani L.", "protein_xref_pubmed", "8664896", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Hematologically important mutations: red cell pyruvate kinase.", "Blood Cells Mol. Dis.", "1996", "Bianchi P., Zanella A., Baronciani L.", "protein_xref_pubmed", "8807089", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Hematologically important mutations: red cell pyruvate kinase (1st update).", "Blood Cells Mol. Dis.", "1996", "Bianchi P., Zanella A., Baronciani L.", "protein_xref_pubmed", "9075576", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "G-to-T transition at cDNA nt 110 (K37Q) in the PKLR (pyruvate kinase) gene is the molecular basis of a case of hereditary increase of red blood cell ATP.", "Hum. Mutat.", "1997", "Beutler E, Westwood B, van Zwieten R, Roos D", "protein_xref_pubmed", "9090535", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Novel mutations and structural implications in R-type pyruvate kinase-deficient patients from Southern Italy.", "Hum. Mutat.", "1998", "Pastore L, Della Morte R, Frisso G, Alfinito F, Vitale D, Calise RM, Ferraro F, Zagari A, Rotoli B, Salvatore F", "protein_xref_pubmed", "9482576", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "Molecular characterization of the PK-LR gene in pyruvate kinase deficient Spanish patients.", "Br. J. Haematol.", "1998", "Zarza R, Alvarez R, Pujades A, Nomdedeu B, Carrera A, Estella J, Remacha A, Sanchez JM, Morey M, Cortes T, Perez Lungmus G, Bureo E, Vives Corrons JL", "protein_xref_pubmed", "9827908", "protein_xref_uniprotkb", "P30613" ], [ "P30613-1", "A new sickle cell disease phenotype associating Hb S trait, severe pyruvate kinase deficiency (PK Conakry), and an alpha-2 globin gene variant (Hb Conakry).", "Br. J. Haematol.", "1998", "Cohen-Solal M, Prehu C, Wajcman H, Poyart C, Bardakdjian-Michau J, Kister J, Prome D, Valentin C, Bachir D, Galacteros F", "protein_xref_pubmed", "9886305", "protein_xref_uniprotkb", "P30613" ], [ "O75962-1", "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.", "Cell", "2006", "Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M", "protein_xref_pubmed", "17081983", "protein_xref_uniprotkb", "E7EPJ7" ], [ "P23919-1", "Lysine acetylation targets protein complexes and co-regulates major cellular functions.", "Science", "2009", "Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M", "protein_xref_pubmed", "19608861", "protein_xref_uniprotkb", "P23919" ], [ "P23919-1", "Structures of human thymidylate kinase in complex with prodrugs: implications for the structure-based design of novel compounds.", "Biochemistry", "2003", "Konrad M., Meier C., Lavie A., Ostermann N., Monnerjahn C., Segura-Pena D., Veit T.", "protein_xref_pubmed", "12614151", "protein_xref_uniprotkb", "P23919" ], [ "P23919-1", "Human thymidylate kinase. Purification, characterization, and kinetic behavior of the thymidylate kinase derived from chronic myelocytic leukemia.", "J. Biol. Chem.", "1977", "Lee LS, Cheng Y", "protein_xref_pubmed", "18469", "protein_xref_uniprotkb", "P23919" ], [ "P23919-1", "Molecular cloning and expression of the human deoxythymidylate kinase gene in yeast.", "Nucleic Acids Res.", "1991", "Su JY, Sclafani RA", "protein_xref_pubmed", "2017365", "protein_xref_uniprotkb", "P23919" ], [ "P23919-1", "Human dTMP kinase: gene expression and enzymatic activity coinciding with cell cycle progression and cell growth.", "DNA Cell Biol.", "1994", "Huang SH, Tang A, Drisco B, Zhang SQ, Seeger R, Li C, Jong A", "protein_xref_pubmed", "8024690", "protein_xref_uniprotkb", "P23919" ], [ "P23919-1", "Deoxythymidylate kinase, DTYMK, is a novel gene for mitochondrial DNA depletion syndrome.", "Clin. Chim. Acta", "2019", "Lam CW, Yeung WL, Ling TK, Wong KC, Law CY", "protein_xref_pubmed", "31271740", "protein_xref_uniprotkb", "P23919" ], [ "P23919-1", "DTYMK is essential for genome integrity and neuronal survival.", "Acta Neuropathol.", "2022", "Vanoevelen JM, Bierau J, Grashorn JC, Lambrichs E, Kamsteeg EJ, Bok LA, Wevers RA, van der Knaap MS, Bugiani M, Frisk JH, Colnaghi R, O'Driscoll M, Hellebrekers DMEI, Rodenburg R, Ferreira CR, Brunner HG, van den Wijngaard A, Abdel-Salam GMH, Wang L, Stumpel CTRM", "protein_xref_pubmed", "34918187", "protein_xref_uniprotkb", "P23919" ], [ "Q8NHX4-1", "Molecular cloning for testis spermatogenesis cell apoptosis related gene TSARG1 and Mtsarg1 and expression analysis for Mtsarg1 gene.", "Yi Chuan Xue Bao", "2003", "Liu G., Li L.Y., Lu G.X., Xing X.W., Fu J.J., Liu S.F.", "protein_xref_pubmed", "12812072", "protein_xref_uniprotkb", "Q8NHX4" ], [ "Q8NHX9-1", "Two newly identified genetic determinants of pigmentation in Europeans.", "Nat. Genet.", "2008", "Sulem P, Gudbjartsson DF, Stacey SN, Helgason A, Rafnar T, Jakobsdottir M, Steinberg S, Gudjonsson SA, Palsson A, Thorleifsson G, Palsson S, Sigurgeirsson B, Thorisdottir K, Ragnarsson R, Benediktsdottir KR, Aben KK, Vermeulen SH, Goldstein AM, Tucker MA, Kiemeney LA, Olafsson JH, Gulcher J, Kong A, Thorsteinsdottir U, Stefansson K", "protein_xref_pubmed", "18488028", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "NAADP mobilizes calcium from acidic organelles through two-pore channels.", "Nature", "2009", "Calcraft PJ, Ruas M, Pan Z, Cheng X, Arredouani A, Hao X, Tang J, Rietdorf K, Teboul L, Chuang KT, Lin P, Xiao R, Wang C, Zhu Y, Lin Y, Wyatt CN, Parrington J, Ma J, Evans AM, Galione A, Zhu MX", "protein_xref_pubmed", "19387438", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Essential requirement for two-pore channel 1 in NAADP-mediated calcium signaling.", "J. Cell Biol.", "2009", "Brailoiu E, Churamani D, Cai X, Schrlau MG, Brailoiu GC, Gao X, Hooper R, Boulware MJ, Dun NJ, Marchant JS, Patel S", "protein_xref_pubmed", "19620632", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Leucine-rich repeat kinase 2 regulates autophagy through a calcium-dependent pathway involving NAADP.", "Hum. Mol. Genet.", "2012", "Gomez-Suaga P, Luzon-Toro B, Churamani D, Zhang L, Bloor-Young D, Patel S, Woodman PG, Churchill GC, Hilfiker S", "protein_xref_pubmed", "22012985", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Hax-1 identified as a two-pore channel (TPC)-binding protein.", "FEBS Lett.", "2013", "Lai F.A., Galione A., Lam A.K., Zissimopoulos S.", "protein_xref_pubmed", "24188827", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "TPC2 controls pigmentation by regulating melanosome pH and size.", "Proc. Natl. Acad. Sci. U.S.A.", "2016", "Di Pietro S.M., Ambrosio A.L., Aradi A.E., Boyle J.A., Christian K.A.", "protein_xref_pubmed", "27140606", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV.", "Nat. Commun.", "2020", "Ou X, Liu Y, Lei X, Li P, Mi D, Ren L, Guo L, Guo R, Chen T, Hu J, Xiang Z, Mu Z, Chen X, Chen J, Hu K, Jin Q, Wang J, Qian Z", "protein_xref_pubmed", "32221306", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "mTOR regulates lysosomal ATP-sensitive two-pore Na(+) channels to adapt to metabolic state.", "Cell", "2013", "Zhou Y., Shi L., Clapham D.E., Ren D., Navarro B., Aranda K., Cang C., Seo Y.J., Nissim I., Battaglia-Hsu S.", "protein_xref_pubmed", "23394946", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "An NAADP-gated two-pore channel targeted to the plasma membrane uncouples triggering from amplifying Ca2+ signals.", "J. Biol. Chem.", "2010", "Brailoiu E, Rahman T, Churamani D, Prole DL, Brailoiu GC, Hooper R, Taylor CW, Patel S", "protein_xref_pubmed", "20880839", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "TPC proteins are phosphoinositide- activated sodium-selective ion channels in endosomes and lysosomes.", "Cell", "2012", "Wang X, Zhang X, Dong XP, Samie M, Li X, Cheng X, Goschka A, Shen D, Zhou Y, Harlow J, Zhu MX, Clapham DE, Ren D, Xu H", "protein_xref_pubmed", "23063126", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Convergent regulation of the lysosomal two-pore channel-2 by Mg(2+), NAADP, PI(3,5)P(2) and multiple protein kinases.", "EMBO J.", "2014", "Jha A, Ahuja M, Patel S, Brailoiu E, Muallem S", "protein_xref_pubmed", "24502975", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "The voltage-gated sodium channel TPC1 confers endolysosomal excitability.", "Nat. Chem. Biol.", "2014", "Cang C, Bekele B, Ren D", "protein_xref_pubmed", "24776928", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Ebola virus. Two-pore channels control Ebola virus host cell entry and are drug targets for disease treatment.", "Science", "2015", "Sakurai Y, Kolokoltsov AA, Chen CC, Tidwell MW, Bauta WE, Klugbauer N, Grimm C, Wahl-Schott C, Biel M, Davey RA", "protein_xref_pubmed", "25722412", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Targeting Two-Pore Channels: Current Progress and Future Challenges.", "Trends Pharmacol. Sci.", "2020", "Zhang Y., Jin X., Parrington J., Alharbi A., Alhoshani A., Hanbashi A.", "protein_xref_pubmed", "32679067", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Author Correction: Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV.", "Nat. Commun.", "2021", "Chen J., Chen X., Li P., Liu Y., Wang J., Chen T., Hu J., Hu K., Guo L., Jin Q., Lei X., Guo R., Qian Z., Ren L., Ou X., Xiang Z., Mi D., Mu Z.", "protein_xref_pubmed", "33795662", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q8NHX9-1", "Lsm12 is an NAADP receptor and a two-pore channel regulatory protein required for calcium mobilization from acidic organelles.", "Nat. Commun.", "2021", "Zhang J, Guan X, Shah K, Yan J", "protein_xref_pubmed", "34362892", "protein_xref_uniprotkb", "Q8NHX9" ], [ "Q9C0H2-1", "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.", "Cell", "2006", "Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M", "protein_xref_pubmed", "17081983", "protein_xref_uniprotkb", "Q9C0H2" ], [ "Q9C0H2-1", "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.", "J. Proteome Res.", "2008", "Cantin GT, Yi W, Lu B, Park SK, Xu T, Lee JD, Yates JR 3rd", "protein_xref_pubmed", "18220336", "protein_xref_uniprotkb", "Q9C0H2" ], [ "Q9C0H2-1", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "J. Proteome Res.", "2009", "Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb", "Q9C0H2" ], [ "Q9C0H2-1", "A novel human Cl(-) channel family related to Drosophila flightless locus.", "J. Biol. Chem.", "2004", "Suzuki M, Mizuno A", "protein_xref_pubmed", "15010458", "protein_xref_uniprotkb", "Q9C0H2" ], [ "Q9C0H5-1", "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.", "Mol. Cell", "2008", "Daub H, Olsen JV, Bairlein M, Gnad F, Oppermann FS, Korner R, Greff Z, Keri G, Stemmann O, Mann M", "protein_xref_pubmed", "18691976", "protein_xref_uniprotkb", "Q9C0H5" ], [ "Q9C0H6-1", "Identification and characterization of KLHL4, a novel human homologue of the Drosophila Kelch gene that maps within the X-linked cleft palate and ankyloglossia (CPX) critical region.", "Genomics", "2001", "Moore G.E., Ross M.T., Stanier P., Arnason A., Bjornsson A., Braybrook C., Howell G., Warry G.", "protein_xref_pubmed", "11401425", "protein_xref_uniprotkb", "Q9C0H6" ], [ "Q9C0H9-5", "p140Cap protein suppresses tumour cell properties, regulating Csk and Src kinase activity.", "EMBO J.", "2007", "Di Stefano P, Damiano L, Cabodi S, Aramu S, Tordella L, Praduroux A, Piva R, Cavallo F, Forni G, Silengo L, Tarone G, Turco E, Defilippi P", "protein_xref_pubmed", "17525734", "protein_xref_uniprotkb", "Q9C0H9" ], [ "Q9C0H9-5", "p130Cas-associated protein (p140Cap) as a new tyrosine-phosphorylated protein involved in cell spreading.", "Mol. Biol. Cell", "2004", "Di Stefano P, Cabodi S, Boeri Erba E, Margaria V, Bergatto E, Giuffrida MG, Silengo L, Tarone G, Turco E, Defilippi P", "protein_xref_pubmed", "14657239", "protein_xref_uniprotkb", "Q9C0H9" ], [ "Q9C0H9-5", "SNIP/p140Cap mRNA expression is an unfavourable prognostic factor in breast cancer and is not expressed in normal breast tissue.", "Br. J. Cancer", "2008", "Kennedy S, Clynes M, Doolan P, Mehta JP, Rani S, Crown J, O'Driscoll L", "protein_xref_pubmed", "18475297", "protein_xref_uniprotkb", "Q9C0H9" ], [ "Q9C0H9-5", "Characterization of a multidomain adaptor protein, p140Cap, as part of a pre-synaptic complex.", "J. Neurochem.", "2008", "Ito H., Morishita R., Usuda N., Nagata K., Sudo K., Asano T., Iwamoto I., Defilippi P., Di Stefano P., Atsuzawa K., Semba R., Takei S.", "protein_xref_pubmed", "18662323", "protein_xref_uniprotkb", "Q9C0H9" ], [ "Q9C0H9-5", "Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity.", "Neuron", "2009", "Jaworski J, Kapitein LC, Gouveia SM, Dortland BR, Wulf PS, Grigoriev I, Camera P, Spangler SA, Di Stefano P, Demmers J, Krugers H, Defilippi P, Akhmanova A, Hoogenraad CC", "protein_xref_pubmed", "19146815", "protein_xref_uniprotkb", "Q9C0H9" ], [ "Q96J66-1", "Two new genes from the human ATP-binding cassette transporter superfamily, ABCC11 and ABCC12, tandemly duplicated on chromosome 16q12.", "Gene", "2001", "Tammur J, Prades C, Arnould I, Rzhetsky A, Hutchinson A, Adachi M, Schuetz JD, Swoboda KJ, Ptacek LJ, Rosier M, Dean M, Allikmets R", "protein_xref_pubmed", "11483364", "protein_xref_uniprotkb", "Q96J66" ], [ "Q96J66-1", "MRP8, a new member of ABC transporter superfamily, identified by EST database mining and gene prediction program, is highly expressed in breast cancer.", "Mol. Med.", "2001", "Bera TK, Lee S, Salvatore G, Lee B, Pastan I", "protein_xref_pubmed", "11591886", "protein_xref_uniprotkb", "Q96J66" ], [ "Q96J66-1", "Multiple splicing variants of two new human ATP-binding cassette transporters, ABCC11 and ABCC12.", "Biochem. Biophys. Res. Commun.", "2001", "Yabuuchi H, Shimizu H, Takayanagi S, Ishikawa T", "protein_xref_pubmed", "11688999", "protein_xref_uniprotkb", "Q96J66" ], [ "Q96J66-1", "MRP8, ATP-binding cassette C11 (ABCC11), is a cyclic nucleotide efflux pump and a resistance factor for fluoropyrimidines 2',3'-dideoxycytidine and 9'-(2'-phosphonylmethoxyethyl)adenine.", "J. Biol. Chem.", "2003", "Kruh G.D., Belinsky M.G., Guo Y., Chen Z.S., Hopper-Borge E., Kotova E., Lee K.", "protein_xref_pubmed", "12764137", "protein_xref_uniprotkb", "Q96J66" ], [ "Q96J66-1", "Transport of bile acids, sulfated steroids, estradiol 17-beta-D-glucuronide, and leukotriene C4 by human multidrug resistance protein 8 (ABCC11).", "Mol. Pharmacol.", "2005", "Kruh G.D., Belinsky M.G., Guo Y., Chen Z.S., Kotova E.", "protein_xref_pubmed", "15537867", "protein_xref_uniprotkb", "Q96J66" ], [ "Q96J66-1", "Human multidrug resistance protein 8 (MRP8/ABCC11), an apical efflux pump for steroid sulfates, is an axonal protein of the CNS and peripheral nervous system.", "Neuroscience", "2006", "Nies A.T., Koenig J., Keppler D., Rius M., Bortfeld M., Herold-Mende C.", "protein_xref_pubmed", "16359813", "protein_xref_uniprotkb", "Q96J66" ], [ "Q96J66-1", "A SNP in the ABCC11 gene is the determinant of human earwax type.", "Nat. 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Biol.", "2011", "Bjerke GA, Hyman-Walsh C, Wotton D", "protein_xref_pubmed", "21746878", "protein_xref_uniprotkb", "P40424" ] ] }, "readme": "Name\n - Human Protein Citations (UniProtKB)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2019-01-23T17:21:05.902655\n\nModified on\n - 2022-09-26T08:48:18.842206\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Citations dataset contains publication information for human [taxid:9606] UniProtKB accessions that includes PMID, journal name, date and author and title. Publications of large scale studies, and high frequency publications pertaining to genome sequencing, cDNA, chromosomes have been filtered out as per https://data.glygen.org/ln2data/releases/data/v-1.12.3/compiled/human_protein_blacklisted_pmids_uniprotkb.csv. The dataset is derived from 2019-09 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/compiled/human_protein_blacklisted_pmids_uniprotkb.csv\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_citations_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_citations_uniprotkb.csv\n Name: human_protein_citations_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_citations_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"17592\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"83087\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1775\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"64\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"82456\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"83118\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"24854\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_citations_uniprotkb.csv" }