{ "bcoid": "GLY_000702", "title": "Fruitfly NCBI Protein Linkouts", "description": "The Fruitfly NCBI Protein Linkouts contains fruitfly [taxid:7227] NCBI RefSeq accessions with their corresponding ...", "filename": "fruitfly_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Protein", "tags": "NCBI Gene Linkouts", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "NP_001259230", "https://glygen.org/protein/M9PJ12", "", "", "", "" ], [ "10227", "Protein", "NP_001259235", "https://glygen.org/protein/P34082", "", "", "", "" ], [ "10227", "Protein", "NP_477014", "https://glygen.org/protein/P40796", "", "", "", "" ], [ "10227", "Protein", "NP_477064", "https://glygen.org/protein/P40797", "", "", "", "" ], [ "10227", "Protein", "NP_524604", "https://glygen.org/protein/P40794", "", "", "", "" ], [ "10227", "Protein", "NP_001033860", "https://glygen.org/protein/P40795", "", "", "", "" ], [ "10227", "Protein", "NP_001261247", "https://glygen.org/protein/P40792", "", "", "", "" ], [ "10227", "Protein", "NP_001245762", "https://glygen.org/protein/P40793", "", "", "", "" ], [ "10227", "Protein", "NP_477018", "https://glygen.org/protein/P40791", "", "", "", "" ], [ "10227", "Protein", "NP_476598", "https://glygen.org/protein/P40798", "", "", "", "" ], [ "10227", "Protein", "NP_536738", "https://glygen.org/protein/P40421", "", "", "", "" ], [ "10227", "Protein", "NP_001284928", "https://glygen.org/protein/P40423", "", "", "", "" ], [ "10227", "Protein", "NP_001259592", "https://glygen.org/protein/P40427", "", "", "", "" ], [ "10227", "Protein", "NP_001247365", "https://glygen.org/protein/A8JRH2", "", "", "", "" ], [ "10227", "Protein", "NP_001096962", "https://glygen.org/protein/A2VEV2", "", "", "", "" ], [ "10227", "Protein", "NP_001097733", "https://glygen.org/protein/A2VEV0", "", "", "", "" ], [ "10227", "Protein", "NP_523842", "https://glygen.org/protein/P08841", "", "", "", "" ], [ "10227", "Protein", "NP_650714", "https://glygen.org/protein/Q9VE87", "", "", "", "" ], [ "10227", "Protein", "NP_001163646", "https://glygen.org/protein/Q9VE86", "", "", "", "" ], [ "10227", "Protein", "NP_650716", "https://glygen.org/protein/Q9VE85", "", "", "", "" ], [ "10227", "Protein", "NP_523764", "https://glygen.org/protein/P05389", "", "", "", "" ], [ "10227", "Protein", "NP_001285877", "https://glygen.org/protein/Q9VK71", "", "", "", "" ], [ "10227", "Protein", "NP_001286435", "https://glygen.org/protein/Q9V776", "", "", "", "" ], [ "10227", "Protein", "NP_648000", "https://glygen.org/protein/Q9VRR2", "", "", "", "" ], [ "10227", "Protein", "NP_001261456", "https://glygen.org/protein/Q9VRR3", "", "", "", "" ], [ "10227", "Protein", "NP_647998", "https://glygen.org/protein/Q9VRR0", "", "", "", "" ], [ "10227", "Protein", "NP_001097522", "https://glygen.org/protein/M9PEG2", "", "", "", "" ], [ "10227", "Protein", "NP_001014566", "https://glygen.org/protein/M9PBR6", "", "", "", "" ], [ "10227", "Protein", "NP_001034035", "https://glygen.org/protein/Q8SX44", "", "", "", "" ], [ "10227", "Protein", "NP_648006", "https://glygen.org/protein/M9PEA4", "", "", "", "" ], [ "10227", "Protein", "NP_523917", "https://glygen.org/protein/P04388", "", "", "", "" ], [ "10227", "Protein", "NP_001033958", "https://glygen.org/protein/A1ZB47", "", "", "", "" ], [ "10227", "Protein", "NP_788400", "https://glygen.org/protein/A1ZB42", "", "", "", "" ], [ "10227", "Protein", "NP_611309", "https://glygen.org/protein/A1ZB48", "", "", "", "" ], [ "10227", "Protein", "NP_725765", "https://glygen.org/protein/A1ZB49", "", "", "", "" ], [ "10227", "Protein", "NP_572759", "https://glygen.org/protein/Q9VYT1", "", "", "", "" ], [ "10227", "Protein", "NP_609247", "https://glygen.org/protein/Q9VLI9", "", "", "", "" ], [ "10227", "Protein", "NP_609251", "https://glygen.org/protein/Q9VLI1", "", "", "", "" ], [ "10227", "Protein", "NP_001285763", "https://glygen.org/protein/Q9VLI0", "", "", "", "" ], [ "10227", "Protein", "NP_609249", "https://glygen.org/protein/Q9VLI3", "", "", "", "" ], [ "10227", "Protein", "NP_001285762", "https://glygen.org/protein/Q9VLI2", "", "", "", "" ], [ "10227", "Protein", "NP_524789", "https://glygen.org/protein/Q9VLI4", "", "", "", "" ], [ "10227", "Protein", "NP_001188733", "https://glygen.org/protein/Q9VLI4", "", "", "", "" ], [ "10227", "Protein", "NP_001260268", "https://glygen.org/protein/Q9VLI6", "", "", "", "" ], [ "10227", "Protein", "NP_001262835", "https://glygen.org/protein/Q95RA8", "", "", "", "" ], [ "10227", "Protein", "NP_001262287", "https://glygen.org/protein/Q27869", "", "", "", "" ], [ "10227", "Protein", "NP_001262297", "https://glygen.org/protein/E1JJ52", "", "", "", "" ], [ "10227", "Protein", "NP_001262779", "https://glygen.org/protein/A0A0B4KHI4", "", "", "", "" ], [ "10227", "Protein", "NP_001262546", "https://glygen.org/protein/A0A0B4KG03", "", "", "", "" ], [ "10227", "Protein", "NP_001262784", "https://glygen.org/protein/A0A0B4KHI4", "", "", "", "" ], [ "10227", "Protein", "NP_001137931", "https://glygen.org/protein/Q02870", "", "", "", "" ], [ "10227", "Protein", "NP_610711", "https://glygen.org/protein/E1JH39", "", "", "", "" ], [ "10227", "Protein", "NP_001286547", "https://glygen.org/protein/Q7JUM3", "", "", "", "" ], [ "10227", "Protein", "NP_724298", "https://glygen.org/protein/Q8SXV2", "", "", "", "" ], [ "10227", "Protein", "NP_001260042", "https://glygen.org/protein/M9PB30", "", "", "", "" ], [ "10227", "Protein", "NP_001260037", "https://glygen.org/protein/M9PB30", "", "", "", "" ], [ "10227", "Protein", "NP_001260032", "https://glygen.org/protein/M9PB30", "", "", "", "" ], [ "10227", "Protein", "NP_001260067", "https://glygen.org/protein/M9PEM2", "", "", "", "" ], [ "10227", "Protein", "NP_001260361", "https://glygen.org/protein/Q8SXV4", "", "", "", "" ], [ "10227", "Protein", "NP_001245486", "https://glygen.org/protein/Q95R34", "", "", "", "" ], [ "10227", "Protein", "NP_001285368", "https://glygen.org/protein/Q8SXV9", "", "", "", "" ], [ "10227", "Protein", "NP_729613", "https://glygen.org/protein/Q95R35", "", "", "", "" ], [ "10227", "Protein", "NP_609017", "https://glygen.org/protein/Q9VME8", "", "", "", "" ], [ "10227", "Protein", "NP_609016", "https://glygen.org/protein/Q9VME9", "", "", "", "" ], [ "10227", "Protein", "NP_001285669", "https://glygen.org/protein/Q9VME0", "", "", "", "" ], [ "10227", "Protein", "NP_609024", "https://glygen.org/protein/Q9VME1", "", "", "", "" ], [ "10227", "Protein", "NP_609023", "https://glygen.org/protein/Q9VME2", "", "", "", "" ], [ "10227", "Protein", "NP_609022", "https://glygen.org/protein/Q9VME3", "", "", "", "" ], [ "10227", "Protein", "NP_001262021", "https://glygen.org/protein/Q9VVS1", "", "", "", "" ], [ "10227", "Protein", "NP_001285668", "https://glygen.org/protein/Q9VME5", "", "", "", "" ], [ "10227", "Protein", "NP_649056", "https://glygen.org/protein/Q9VVS3", "", "", "", "" ], [ "10227", "Protein", "NP_649055", "https://glygen.org/protein/Q9VVS2", "", "", "", "" ], [ "10227", "Protein", "NP_647730", "https://glygen.org/protein/Q9VZZ6", "", "", "", "" ], [ "10227", "Protein", "NP_001286545", "https://glygen.org/protein/A1ZAX1", "", "", "", "" ], [ "10227", "Protein", "NP_001260883", "https://glygen.org/protein/A0A0B4KFC0", "", "", "", "" ], [ "10227", "Protein", "NP_001261085", "https://glygen.org/protein/A0A0B4KFC4", "", "", "", "" ], [ "10227", "Protein", "NP_001260795", "https://glygen.org/protein/Q86S05", "", "", "", "" ], [ "10227", "Protein", "NP_536731", "https://glygen.org/protein/P17336", "", "", "", "" ], [ "10227", "Protein", "NP_001261090", "https://glygen.org/protein/A0A0B4KFC9", "", "", "", "" ], [ "10227", "Protein", "NP_001036676", "https://glygen.org/protein/A8JQT5", "", "", "", "" ], [ "10227", "Protein", "NP_001286976", "https://glygen.org/protein/P56079", "", "", "", "" ], [ "10227", "Protein", "NP_608970", "https://glygen.org/protein/Q9I7P2", "", "", "", "" ], [ "10227", "Protein", "NP_001189016", "https://glygen.org/protein/Q9W0I6", "", "", "", "" ], [ "10227", "Protein", "NP_652063", "https://glygen.org/protein/Q7KN74", "", "", "", "" ] ] }, "readme": "Name\n - Fruitfly NCBI Protein Linkouts\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-09-14T12:25:39.026264\n\nModified on\n - 2022-09-26T09:08:12.707824\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly NCBI Protein Linkouts contains fruitfly [taxid:7227] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_proteinnames_refseq.csv\n Name: fruitfly_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_xref_refseq.csv\n Output Subdomain\n Name: fruitfly_protein_ncbi_linkouts.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_ncbi_linkouts.csv\n Name: fruitfly_protein_ncbi_linkouts.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"20660\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"13757\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_ncbi_linkouts.csv" }