{
    "bcoid": "GLY_000700",
    "title": "Protein Resource Ontology [Fruitfly]",
    "description": "This dataset provides the Protein Resource Ontology (PRO) identifiers associated with the proteoforms ...",
    "filename": "fruitfly_protein_pro_annotation.csv",
    "filetype": "csv",
    "categories": {
        "species": "Drosophila melanogaster",
        "molecule": "Proteoform",
        "tags": "PRO ontology",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q9VLB2-1...",
                "MOD:00693..."
            ],
            [
                "Q9VLB2-1...",
                "OBI:0100026..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "pro_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "pro_id"
                },
                {
                    "type": "string",
                    "label": "pro_protein_name"
                },
                {
                    "type": "string",
                    "label": "pro_protein_definition"
                },
                {
                    "type": "string",
                    "label": "pro_comment"
                },
                {
                    "type": "string",
                    "label": "pro_synonym"
                },
                {
                    "type": "string",
                    "label": "pro_relationship"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "Q9VLB2-1",
                "MOD:00693",
                "glycosylated residue",
                "",
                "",
                "GlycoRes EXACT PSI-MOD-label []",
                "",
                "protein_xref_pro_proteoform",
                "MOD:00693"
            ],
            [
                "Q9VLB2-1",
                "OBI:0100026",
                "organism",
                "",
                "",
                "",
                "",
                "protein_xref_pro_proteoform",
                "OBI:0100026"
            ],
            [
                "Q9VLB2-1",
                "PR:000000001",
                "protein",
                "",
                "",
                "",
                "",
                "protein_xref_pro_proteoform",
                "PR:000000001"
            ],
            [
                "Q9VLB2-1",
                "PR:000037069",
                "glycoprotein",
                "A protein that contains at least one glycosylated residue. [PRO:DAN]",
                "Category=modification.",
                "Prot/GlycoRes+ EXACT PRO-short-label [PRO:DAN]",
                "",
                "protein_xref_pro_proteoform",
                "PR:000037069"
            ],
            [
                "Q9VLB2-1",
                "GNO:00000001",
                "glycan",
                "",
                "",
                "",
                "",
                "protein_xref_pro_proteoform",
                "GNO:00000001"
            ]
        ]
    },
    "readme": "Name\n   - Protein Resource Ontology [Fruitfly]\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2022-09-14T12:16:23.572102\n\nModified on\n   - 2022-09-26T09:08:12.615962\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n   - Darren Natale [dan5@georgetown.edu], Matthew Campbell  [m.campbell2@griffith.edu.au]\n\nChecksum\n   - \n\nUsability Domain\n   - This dataset provides the Protein Resource Ontology (PRO) identifiers associated with the proteoforms generated based on the protein, site, glycan information for fruitfly [taxid:7227] proteins. \n\nDescription Domain\n   Keywords\n   - Proteoforms\n   - PRO\n   - UniCarbKB\n\n   Pipeline Steps\n   - Step-0: The source file was downloaded from the contributors (Darren Natale)  and a python script was used to convert the source file into a csv format.\n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: GlyGen_table_to_PRO.obo\n      URI: /data/shared/glyds/downloads/pro/pro_08_28_2020/GlyGen_table_to_PRO.obo\n   Output Subdomain\n      Name: fruitfly_protein_pro_annotation.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_pro_annotation.csv\n      Name: fruitfly_protein_pro_annotation.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_pro_annotation.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"pro_id\"\n     Description: \"ID associated to a proteoform from PRO database\"\n      Unique Values: \"5\"\n      Name: \"pro_protein_name\"\n     Description: \"Protein name from PRO database\"\n      Unique Values: \"5\"\n      Name: \"pro_protein_definition\"\n     Description: \"Protein/Proteoform defination from PRO database\"\n      Unique Values: \"2\"\n      Name: \"pro_comment\"\n     Description: \"Comment from PRO\"\n      Unique Values: \"2\"\n      Name: \"pro_synonym\"\n     Description: \"Synonym from PRO\"\n      Unique Values: \"3\"\n      Name: \"pro_relationship\"\n     Description: \"Relation defination from PRO database\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"5\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_protein_pro_annotation.csv"
}