{
    "bcoid": "GLY_000697",
    "title": "Rat Proteoform O-GlcNAc Glycosylation Citations (MCW)",
    "description": "The Rat O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in ...",
    "filename": "rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filetype": "csv",
    "categories": {
        "species": "Homo sapiens",
        "molecule": "Proteoform",
        "tags": "Protein Citations O-GlcNAc (MCW)",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
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                "A0A096MJ01-1...",
                "An O-GlcNAcy..."
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                "A0A0G2JW41-1...",
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                "OGT-mediated O-GlcNAcylation promotes NF-kappaB activation and inflammation in acute pancreatitis.",
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                "Zhang D, Cai Y, Chen M, Gao L, Shen Y, Huang Z",
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                "Dela Justina V, Goncalves JS, de Freitas RA, Fonseca AD, Volpato GT, Tostes RC, Carneiro FS, Lima VV, Giachini FR",
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                "Comparative Proteomics Reveals Dysregulated Mitochondrial O-GlcNAcylation in Diabetic Hearts.",
                "Journal of proteome research",
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                "Arteriosclerosis, thrombosis, and vascular biology",
                "2018 Jun",
                "Yao D, Xu L, Xu O, Li R, Chen M, Shen H, Zhu H, Zhang F, Yao D, Chen YF, Oparil S, Zhang Z, Gong K",
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                "29622561",
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                "The Journal of biological chemistry",
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                "International journal of molecular sciences",
                "2021 Aug 26",
                "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B",
                "protein_xref_pubmed",
                "34502162",
                "protein_xref_oglcnac_db",
                "D4AA63",
                "G49108TO"
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform O-GlcNAc Glycosylation Citations (MCW)\n\nVersion\n   - v-2.0.3\n\nCreated on\n  - 2022-09-06T16:51:28.071892\n\nModified on\n   - 2023-03-14T17:13:49.489Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n   - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu],  Rex R. Berendt [rberendt@mcw.edu],  Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in the dataset Rat O-GlcNAc Glycosylation Sites (MCW) contributed by Stephanie Olivier's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      Name: rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"580\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"117\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"67\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"116\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"116\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"117\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"580\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/rat_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv"
}
