{ "bcoid": "GLY_000683", "title": "Fruitfly Phosphorylation Sites (iPTMNet)", "description": "This dataset contains fruitfly [taxid:7227] phosphorylation sites from iPTMNet database. The protein ...", "filename": "fruitfly_proteoform_phosphorylation_sites_iptmnet.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Proteoform", "tags": "Phosphorylation Sites (iPTMnet)", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "A1A708-1...", "200..." ], [ "A1A708-1...", "200..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "A1A708-1", "200", "Ser", "", "", "protein_xref_pelm", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "200", "Ser", "", "", "protein_xref_iptmnet", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "200", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "202", "Ser", "", "", "protein_xref_pelm", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "202", "Ser", "", "", "protein_xref_iptmnet", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "202", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "212", "Ser", "", "", "protein_xref_pelm", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "212", "Ser", "", "", "protein_xref_iptmnet", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "212", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "214", "Ser", "", "", "protein_xref_pelm", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "214", "Ser", "", "", "protein_xref_iptmnet", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "214", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "251", "Ser", "", "", "protein_xref_pelm", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "251", "Ser", "", "", "protein_xref_iptmnet", "A1A708", "protein_xref_iptmnet", "A1A708" ], [ "A1A708-1", "251", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1A708" ], [ "A1ZAB5-1", "270", "Ser", "", "", "protein_xref_pelm", "A1ZAB5", "protein_xref_iptmnet", "A1ZAB5" ], [ "A1ZAB5-1", "270", "Ser", "", "", "protein_xref_iptmnet", "A1ZAB5", "protein_xref_iptmnet", "A1ZAB5" ], [ "A1ZAB5-1", "270", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAB5" ], [ "A1ZAJ2-1", "1416", "Ser", "", "", "protein_xref_pelm", "A1ZAJ2", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAJ2-1", "1416", "Ser", "", "", "protein_xref_iptmnet", "A1ZAJ2", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAJ2-1", "1416", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAJ2-1", "1406", "Thr", "", "", "protein_xref_pelm", "A1ZAJ2", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAJ2-1", "1406", "Thr", "", "", "protein_xref_iptmnet", "A1ZAJ2", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAJ2-1", "1406", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAJ2-1", "1419", "Thr", "", "", "protein_xref_pelm", "A1ZAJ2", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAJ2-1", "1419", "Thr", "", "", "protein_xref_iptmnet", "A1ZAJ2", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAJ2-1", "1419", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAJ2" ], [ "A1ZAU8-1", "1034", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1034", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1034", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1035", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1035", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1035", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1036", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1036", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1036", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1219", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1219", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1219", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1228", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1228", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1228", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1398", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1398", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1398", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1399", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1399", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1399", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1400", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1400", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "1400", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "422", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "422", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "422", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "431", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "431", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "431", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "441", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "441", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "441", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "460", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "460", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "460", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "463", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "463", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "463", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "466", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "466", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "466", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "494", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "494", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "494", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "496", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "496", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "496", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "513", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "513", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "513", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "530", "Ser", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "530", "Ser", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "530", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "322", "Thr", "", "", "protein_xref_pelm", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "322", "Thr", "", "", "protein_xref_iptmnet", "A1ZAU8", "protein_xref_iptmnet", "A1ZAU8" ], [ "A1ZAU8-1", "322", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_iptmnet", "A1ZAU8" ] ] }, "readme": "Name\n - Fruitfly Phosphorylation Sites (iPTMNet)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-09-06T09:56:04.354720\n\nModified on\n - 2022-09-26T09:08:12.740578\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - This dataset contains fruitfly [taxid:7227] phosphorylation sites from iPTMNet database. The protein and sites are mapped to UniProtKB canonical accessions and fasta sequence. If you use this dataset please provide proper attribution to iPTMnet-GlyGen.\n\nDescription Domain\n Keywords\n - iPTMnet\n - Phosphorylation sites\n\n Pipeline Steps\n - Step-0: The script extracts the phosphorylation information from the source dataset as per taxid and extracts as a csv dataset. The protein accession and sites are mapped to the UniProtKB canonical accession and fasta sequence.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_protein_masterlist.csv\n Name: ptm.txt\n URI: /data/shared/glyds/downloads/iptmnet/2022_02/ptm.txt\n Output Subdomain\n Name: fruitfly_proteoform_phosphorylation_sites_iptmnet.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_proteoform_phosphorylation_sites_iptmnet.csv\n Name: fruitfly_proteoform_phosphorylation_sites_iptmnet.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_proteoform_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"774\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"1283\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"3\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"5\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"5\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"6\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"964\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"774\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_proteoform_phosphorylation_sites_iptmnet.csv" }