{ "bcoid": "GLY_000682", "title": "Fruitfly Phosphorylation Sites (UniProtKB)", "description": "The Fruitfly Phosphorylation Sites (UniProtKB) dataset contains fruitfly [taxid:7227] UniProtKB canonical ...", "filename": "fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Drosophila melanogaster", "molecule": "Proteoform", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9VUY9-1...", "116..." ], [ "Q9VUY9-1...", "116..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q9VUY9-1", "116", "Ser", "", "", "protein_xref_uniprotkb", "Q9VUY9", "protein_xref_uniprotkb", "Q9VUY9", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VUY9-1", "116", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VUY9", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24214-1", "35", "Ser", "", "", "protein_xref_uniprotkb", "Q24214", "protein_xref_uniprotkb", "Q24214", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24214-1", "35", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q24214", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q7YZH1-1", "3110", "Ser", "", "", "protein_xref_uniprotkb", "Q7YZH1", "protein_xref_uniprotkb", "Q7YZH1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q7YZH1-1", "3110", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q7YZH1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P20193-1", "975", "Ser", "", "", "protein_xref_uniprotkb", "P20193", "protein_xref_uniprotkb", "P20193", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P20193-1", "975", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P20193", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IN94-1", "2176", "Thr", "", "", "protein_xref_uniprotkb", "Q8IN94", "protein_xref_uniprotkb", "Q8IN94", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q8IN94-1", "2176", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8IN94", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q9VCA8-1", "3596", "Ser", "", "", "protein_xref_uniprotkb", "Q9VCA8", "protein_xref_uniprotkb", "Q9VCA8", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VCA8-1", "3596", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VCA8", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P28167-1", "2361", "Ser", "", "", "protein_xref_uniprotkb", "P28167", "protein_xref_uniprotkb", "P28167", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P28167-1", "2361", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P28167", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q0KHY3-3", "1251", "Thr", "", "", "protein_xref_uniprotkb", "Q0KHY3", "protein_xref_uniprotkb", "Q0KHY3", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q0KHY3-3", "1251", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q0KHY3", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q9VWE6-1", "1975", "Ser", "", "", "protein_xref_uniprotkb", "Q9VWE6", "protein_xref_uniprotkb", "Q9VWE6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VWE6-1", "1975", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VWE6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P13709-1", "1980", "Ser", "", "", "protein_xref_uniprotkb", "P13709", "protein_xref_uniprotkb", "P13709", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P13709-1", "1980", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P13709", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8INM3-1", "1055", "Ser", "", "", "protein_xref_uniprotkb", "Q8INM3", "protein_xref_uniprotkb", "Q8INM3", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8INM3-1", "1055", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8INM3", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8INM3-1", "1055", "Ser", "", "", "protein_xref_pubmed", "17372656", "protein_xref_uniprotkb", "Q8INM3", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VDW6-5", "3207", "Ser", "", "", "protein_xref_uniprotkb", "Q9VDW6", "protein_xref_uniprotkb", "Q9VDW6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VDW6-5", "3207", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VDW6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24292-1", "3469", "Ser", "", "", "protein_xref_uniprotkb", "Q24292", "protein_xref_uniprotkb", "Q24292", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24292-1", "3469", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q24292", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q7JUX9-1", "57", "Ser", "", "", "protein_xref_uniprotkb", "Q7JUX9", "protein_xref_uniprotkb", "Q7JUX9", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q7JUX9-1", "57", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q7JUX9", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P22058-1", "299", "Ser", "", "", "protein_xref_uniprotkb", "P22058", "protein_xref_uniprotkb", "P22058", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P22058-1", "299", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P22058", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IRJ8-2", "229", "Ser", "", "", "protein_xref_uniprotkb", "Q8IRJ8", "protein_xref_uniprotkb", "Q8IRJ8", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IRJ8-2", "229", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8IRJ8", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IRB5-1", "432", "Ser", "", "", "protein_xref_uniprotkb", "Q8IRB5", "protein_xref_uniprotkb", "Q8IRB5", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8IRB5-1", "432", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8IRB5", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q59E36-2", "18", "Ser", "", "", "protein_xref_uniprotkb", "Q59E36", "protein_xref_uniprotkb", "Q59E36", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q59E36-2", "18", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q59E36", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8T498-1", "1164", "Ser", "", "", "protein_xref_uniprotkb", "Q8T498", "protein_xref_uniprotkb", "Q8T498", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q8T498-1", "1164", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q8T498", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9GQN5-1", "268", "Ser", "", "", "protein_xref_uniprotkb", "Q9GQN5", "protein_xref_uniprotkb", "Q9GQN5", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9GQN5-1", "268", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9GQN5", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P05990-1", "1883", "Ser", "", "", "protein_xref_uniprotkb", "P05990", "protein_xref_uniprotkb", "P05990", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P05990-1", "1883", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P05990", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VM60-1", "150", "Ser", "", "", "protein_xref_uniprotkb", "Q9VM60", "protein_xref_uniprotkb", "Q9VM60", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VM60-1", "150", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VM60", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VDZ3-1", "481", "Tyr", "", "", "protein_xref_uniprotkb", "Q9VDZ3", "protein_xref_uniprotkb", "Q9VDZ3", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "Q9VDZ3-1", "481", "Tyr", "", "", "protein_xref_pubmed", "17372656", "protein_xref_uniprotkb", "Q9VDZ3", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "O46106-1", "365", "Ser", "", "", "protein_xref_uniprotkb", "O46106", "protein_xref_uniprotkb", "O46106", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "O46106-1", "365", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "O46106", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P43125-1", "401", "Ser", "", "", "protein_xref_uniprotkb", "P43125", "protein_xref_uniprotkb", "P43125", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P43125-1", "401", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P43125", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W5D0-1", "1073", "Ser", "", "", "protein_xref_uniprotkb", "Q9W5D0", "protein_xref_uniprotkb", "Q9W5D0", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W5D0-1", "1073", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9W5D0", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9V8R9-1", "659", "Ser", "", "", "protein_xref_uniprotkb", "Q9V8R9", "protein_xref_uniprotkb", "Q9V8R9", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9V8R9-1", "659", "Ser", "", "", "protein_xref_pubmed", "17372656", "protein_xref_uniprotkb", "Q9V8R9", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W3W8-1", "158", "Ser", "", "", "protein_xref_uniprotkb", "Q9W3W8", "protein_xref_uniprotkb", "Q9W3W8", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9W3W8-1", "158", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9W3W8", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VLD6-1", "152", "Ser", "", "", "protein_xref_uniprotkb", "Q9VLD6", "protein_xref_uniprotkb", "Q9VLD6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VLD6-1", "152", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VLD6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VHY5-1", "371", "Ser", "", "", "protein_xref_uniprotkb", "Q9VHY5", "protein_xref_uniprotkb", "Q9VHY5", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VHY5-1", "371", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VHY5", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24583-1", "87", "Ser", "", "", "protein_xref_uniprotkb", "Q24583", "protein_xref_uniprotkb", "Q24583", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24583-1", "87", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q24583", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VFK6-1", "346", "Ser", "", "", "protein_xref_uniprotkb", "Q9VFK6", "protein_xref_uniprotkb", "Q9VFK6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VFK6-1", "346", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VFK6", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VTU0-1", "98", "Ser", "", "", "protein_xref_uniprotkb", "Q9VTU0", "protein_xref_uniprotkb", "Q9VTU0", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VTU0-1", "98", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VTU0", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P40791-1", "98", "Ser", "", "", "protein_xref_uniprotkb", "P40791", "protein_xref_uniprotkb", "P40791", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P40791-1", "98", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "P40791", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VKK1-1", "576", "Ser", "", "", "protein_xref_uniprotkb", "Q9VKK1", "protein_xref_uniprotkb", "Q9VKK1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VKK1-1", "576", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VKK1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VKK1-1", "576", "Ser", "", "", "protein_xref_pubmed", "17372656", "protein_xref_uniprotkb", "Q9VKK1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VB98-1", "767", "Ser", "", "", "protein_xref_uniprotkb", "Q9VB98", "protein_xref_uniprotkb", "Q9VB98", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VB98-1", "767", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VB98", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9V877-1", "609", "Thr", "", "", "protein_xref_uniprotkb", "Q9V877", "protein_xref_uniprotkb", "Q9V877", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q9V877-1", "609", "Thr", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9V877", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q7K3L1-1", "792", "Ser", "", "", "protein_xref_uniprotkb", "Q7K3L1", "protein_xref_uniprotkb", "Q7K3L1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q7K3L1-1", "792", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q7K3L1", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24368-1", "67", "Ser", "", "", "protein_xref_uniprotkb", "Q24368", "protein_xref_uniprotkb", "Q24368", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q24368-1", "67", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q24368", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VCU9-1", "1880", "Ser", "", "", "protein_xref_uniprotkb", "Q9VCU9", "protein_xref_uniprotkb", "Q9VCU9", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9VCU9-1", "1880", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9VCU9", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9V719-1", "333", "Ser", "", "", "protein_xref_uniprotkb", "Q9V719", "protein_xref_uniprotkb", "Q9V719", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q9V719-1", "333", "Ser", "", "", "protein_xref_pubmed", "18327897", "protein_xref_uniprotkb", "Q9V719", "Phosphoserine", "Phosphoserine", "ECO_0000269" ] ] }, "readme": "Name\n - Fruitfly Phosphorylation Sites (UniProtKB)\n\nVersion\n - v-2.0.3\n\nCreated on\n - 2022-09-06T09:53:09.953304\n\nModified on\n - 2022-09-26T09:08:12.741565\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Phosphorylation Sites (UniProtKB) dataset contains fruitfly [taxid:7227] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: /data/shared/glyds/downloads/ebi/2022_05/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: fruitfly_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.0.3/reviewed/fruitfly_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"782\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"1279\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"4\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"1\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"825\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"782\"\n Name: \"phosphorylated_residue\"\n Description: \"The amino acid that is modified by phosphorylation\"\n Unique Values: \"4\"\n Name: \"phosphorylation_annotation\"\n Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n Unique Values: \"40\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"6\"", "downloadurl": "/ln2data/releases/data/v-2.0.3/reviewed/fruitfly_proteoform_phosphorylation_sites_uniprotkb.csv" }